[med-svn] r14782 - in trunk/packages/rostlab/rate4site/trunk/debian: . patches

[Laszlo Kajan]

Author: lkajan
Date: 2013-10-01 19:20:09 +0000 (Tue, 01 Oct 2013)
New Revision: 14782

Added:
   trunk/packages/rostlab/rate4site/trunk/debian/patches/
   trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am
   trunk/packages/rostlab/rate4site/trunk/debian/patches/series
   trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors
   trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install
Modified:
   trunk/packages/rostlab/rate4site/trunk/debian/
   trunk/packages/rostlab/rate4site/trunk/debian/control
   trunk/packages/rostlab/rate4site/trunk/debian/rules
Log:
many fixes to Debianization


Property changes on: trunk/packages/rostlab/rate4site/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
   + 1


Modified: trunk/packages/rostlab/rate4site/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/control	2013-10-01 18:31:51 UTC (rev 14781)
+++ trunk/packages/rostlab/rate4site/trunk/debian/control	2013-10-01 19:20:09 UTC (rev 14782)
@@ -2,21 +2,35 @@
 Section: science
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Guy Yachdav <gyachdav at rostlab.org>, Laszlo Kajan <lkajan at rostlab.org>
-Build-Depends: debhelper (>= 9.0.0), autotools-dev
+Uploaders: Guy Yachdav <gyachdav at rostlab.org>
+Build-Depends: debhelper (>= 9.0.0), automake, autotools-dev
 Standards-Version: 3.9.4
 Homepage: http://www.tau.ac.il/~itaymay/cp/rate4site.html
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/rostlab/rate4site
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/rate4site
 
-
 Package: rate4site
-Architecture: all
+Architecture: any
 Pre-Depends: debconf (>= 0.5)
-Description: detection of conserved amino-acid sites 
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: detector of conserved amino-acid sites 
  Rate4Site calculates the relative evolutionary rate at each site using a 
  probabilistic-based evolutionary model. 
  This allows taking into account the stochastic process underlying sequence
  evolution within protein families
  and the phylogenetic tree of the proteins in the family. 
  The conservation score at a site corresponds to the site's evolutionary rate. 
+
+Package: rate4site-dbg
+Architecture: any
+Section: debug
+Depends: rate4site (= ${binary:Version}), ${misc:Depends}
+Description: debugging symbols for rate4site-dbg
+ Rate4Site calculates the relative evolutionary rate at each site using a 
+ probabilistic-based evolutionary model. 
+ This allows taking into account the stochastic process underlying sequence
+ evolution within protein families
+ and the phylogenetic tree of the proteins in the family. 
+ The conservation score at a site corresponds to the site's evolutionary rate. 
+ .
+ This package provides the detached debug symbols for rate4site.

Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am	                        (rev 0)
+++ trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am	2013-10-01 19:20:09 UTC (rev 14782)
@@ -0,0 +1,10 @@
+--- a/src/rate4site/Makefile.am
++++ b/src/rate4site/Makefile.am
+@@ -1,5 +1,5 @@
+-rate4sitedir=usr/share/rate4site
+-rate4site_doublerepdir=usr/share/rate4site
++rate4sitedir=$(pkgdatadir)
++rate4site_doublerepdir=$(pkgdatadir)
+ 
+ PROGS=rate4site rate4site_doublerep
+ 

Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/series
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/rostlab/rate4site/trunk/debian/patches/series	2013-10-01 19:20:09 UTC (rev 14782)
@@ -0,0 +1,2 @@
+spelling_errors
+Makefile.am

Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors	                        (rev 0)
+++ trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors	2013-10-01 19:20:09 UTC (rev 14782)
@@ -0,0 +1,11 @@
+--- a/src/phylogeny/numRec.cpp
++++ b/src/phylogeny/numRec.cpp
+@@ -134,7 +134,7 @@
+ 		} // end of for (ip = ...
+ 	} // end of for (i = 0; i< MaxNumberOfSweeps ; ++i) {
+ 	vector<string> err;
+-	err.push_back("problems in function MyJacobi. more than MaxNumberOfSweeps were necesary.");
++	err.push_back("problems in function MyJacobi. more than MaxNumberOfSweeps were necessary.");
+ 	errorMsg::reportError(err);
+ 	
+ 	return -1;

Added: trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install	                        (rev 0)
+++ trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install	2013-10-01 19:20:09 UTC (rev 14782)
@@ -0,0 +1 @@
+usr/bin/rate4site

Modified: trunk/packages/rostlab/rate4site/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/rate4site/trunk/debian/rules	2013-10-01 18:31:51 UTC (rev 14781)
+++ trunk/packages/rostlab/rate4site/trunk/debian/rules	2013-10-01 19:20:09 UTC (rev 14782)
@@ -1,9 +1,18 @@
 #!/usr/bin/make -f
 #export DH_VERBOSE=1
 
-%:
-	dh $@
+export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
+export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
+export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS)
+export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
 
+.PHONY: override_dh_strip
+override_dh_strip:
+	dh_strip --dbg-package=rate4site-dbg
+
 get-orig-source:
 	mkdir -p ../tarballs
 	uscan --verbose --force-download --destdir=../tarballs
+
+%:
+	dh $@ --parallel --with autotools_dev