[med-svn] [r-cran-vegan] branch master updated (797ae1b -> 6d6b02e)
Charles Plessy
plessy at alioth.debian.org
Tue Oct 15 10:43:26 UTC 2013
This is an automated email from the git hooks/post-receive script.
plessy pushed a change to branch master
in repository r-cran-vegan.
from 797ae1b Removed myself from Uploaders.
new b8ffbea Imported Upstream version 2.0-9
new 112f210 Merge tag 'upstream/2.0-9'
new 6d6b02e New upstream release, no new copyright nor license notice.
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.Rinstignore | 5 -
DESCRIPTION | 23 +-
MD5 | 187 +++++-----
NAMESPACE | 5 +-
R/adipart.default.R | 2 +-
R/anova.ccabyaxis.R | 3 +-
R/as.mlm.cca.R | 4 -
R/as.mlm.rda.R | 4 -
R/betadisper.R | 15 +-
R/betadiver.R | 9 +-
R/capscale.R | 2 -
R/density.anosim.R | 1 -
R/densityplot.oecosimu.R | 1 -
R/eigenvals.R | 14 +-
R/hiersimu.default.R | 2 +-
R/indpower.R | 2 +-
R/intersetcor.R | 3 -
R/multipart.default.R | 2 +-
R/oecosimu.R | 4 +-
R/ordiArrowTextXY.R | 27 ++
R/ordicloud.R | 1 -
R/ordilabel.R | 4 -
R/ordipointlabel.R | 8 +-
R/ordiresids.R | 1 -
R/ordisplom.R | 1 -
R/ordisurf.R | 122 +++++--
R/orditkplot.R | 3 -
R/ordixyplot.R | 1 -
R/plot.cca.R | 3 +-
R/plot.envfit.R | 94 ++---
R/plot.ordipointlabel.R | 11 +
R/plot.ordisurf.R | 6 +-
R/plot.poolaccum.R | 1 -
R/plot.radfit.frame.R | 1 -
R/plot.renyi.R | 1 -
R/plot.renyiaccum.R | 1 -
R/prepanel.ordi3d.R | 2 +-
R/print.betadisper.R | 11 +-
R/print.oecosimu.R | 4 +-
R/print.vectorfit.R | 5 +-
R/radlattice.R | 1 -
R/raupcrick.R | 2 +-
R/stressplot.R | 22 +-
R/text.cca.R | 2 +-
R/vegandocs.R | 9 +-
R/vegdist.R | 2 +-
build/vignette.rds | Bin 0 -> 289 bytes
debian/changelog | 6 +-
debian/copyright | 2 +-
inst/ChangeLog | 53 ++-
inst/NEWS.Rd | 54 ++-
inst/doc/FAQ-vegan.pdf | Bin 146861 -> 148690 bytes
inst/doc/NEWS.html | 64 +++-
inst/doc/decision-vegan.R | 152 ++++++++
inst/doc/decision-vegan.Rnw | 167 ++++-----
inst/doc/decision-vegan.pdf | Bin 281477 -> 319750 bytes
inst/doc/diversity-vegan.R | 254 ++++++++++++++
inst/doc/diversity-vegan.Rnw | 311 ++++++++---------
inst/doc/diversity-vegan.pdf | Bin 308847 -> 358270 bytes
inst/doc/intro-vegan.R | 195 +++++++++++
inst/doc/intro-vegan.Rnw | 76 ++--
inst/doc/intro-vegan.pdf | Bin 169289 -> 237324 bytes
inst/doc/vegan.bib | 99 ------
inst/doc/veganjss.sty | 24 --
man/SSarrhenius.Rd | 4 +-
man/adipart.Rd | 4 +-
man/adonis.Rd | 3 +-
man/anova.cca.Rd | 5 +-
man/betadisper.Rd | 35 +-
man/cca.Rd | 4 +-
man/clamtest.Rd | 2 +-
man/density.adonis.Rd | 7 +-
man/eventstar.Rd | 2 +-
man/make.cepnames.Rd | 2 +-
man/mantel.correlog.Rd | 3 +-
man/model.matrix.cca.Rd | 4 +-
man/monoMDS.Rd | 2 +-
man/mrpp.Rd | 4 +-
man/multipart.Rd | 2 +-
man/nobs.adonis.Rd | 2 +-
man/oecosimu.Rd | 9 +-
man/ordipointlabel.Rd | 31 +-
man/ordistep.Rd | 2 +-
man/ordisurf.Rd | 199 ++++++++---
man/pcnm.Rd | 6 +-
man/prc.Rd | 2 +-
man/predict.cca.Rd | 2 +-
man/radfit.Rd | 2 +-
man/specaccum.Rd | 4 +-
man/varpart.Rd | 92 ++---
man/vegan-internal.Rd | 7 +
man/vegan-package.Rd | 3 +-
man/vegdist.Rd | 2 +-
vignettes/.install_extras | 2 +
{inst/doc => vignettes}/FAQ-vegan.pdf | Bin 146861 -> 148690 bytes
{inst/doc => vignettes}/FAQ-vegan.texi | 31 +-
{inst/doc => vignettes}/Makefile | 4 +-
{inst/doc => vignettes}/NEWS.html | 64 +++-
{inst/doc => vignettes}/decision-vegan.Rnw | 167 ++++-----
{inst/doc => vignettes}/decision-vegan.tex | 246 +++++++------
{inst/doc => vignettes}/diversity-vegan.Rnw | 311 ++++++++---------
{inst/doc => vignettes}/diversity-vegan.tex | 500 ++++++++++++++-------------
{inst/doc => vignettes}/intro-vegan.Rnw | 76 ++--
{inst/doc => vignettes}/intro-vegan.tex | 183 +++++-----
vignettes/vegan.bib | 356 +++++++++++++++++++
vignettes/vegan.sty | 47 +++
106 files changed, 2952 insertions(+), 1572 deletions(-)
delete mode 100644 .Rinstignore
create mode 100644 R/ordiArrowTextXY.R
create mode 100644 R/plot.ordipointlabel.R
create mode 100644 build/vignette.rds
create mode 100644 inst/doc/decision-vegan.R
create mode 100644 inst/doc/diversity-vegan.R
create mode 100644 inst/doc/intro-vegan.R
delete mode 100644 inst/doc/vegan.bib
delete mode 100644 inst/doc/veganjss.sty
create mode 100644 vignettes/.install_extras
copy {inst/doc => vignettes}/FAQ-vegan.pdf (54%)
rename {inst/doc => vignettes}/FAQ-vegan.texi (96%)
rename {inst/doc => vignettes}/Makefile (86%)
copy {inst/doc => vignettes}/NEWS.html (93%)
copy {inst/doc => vignettes}/decision-vegan.Rnw (88%)
rename {inst/doc => vignettes}/decision-vegan.tex (83%)
copy {inst/doc => vignettes}/diversity-vegan.Rnw (76%)
rename {inst/doc => vignettes}/diversity-vegan.tex (69%)
copy {inst/doc => vignettes}/intro-vegan.Rnw (93%)
rename {inst/doc => vignettes}/intro-vegan.tex (86%)
create mode 100644 vignettes/vegan.bib
create mode 100644 vignettes/vegan.sty
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