[med-svn] [r-cran-vegan] branch upstream updated (8136fa9 -> b8ffbea)
Charles Plessy
plessy at alioth.debian.org
Tue Oct 15 10:43:48 UTC 2013
This is an automated email from the git hooks/post-receive script.
plessy pushed a change to branch upstream
in repository r-cran-vegan.
from 8136fa9 Imported Upstream version 2.0-7
adds b8ffbea Imported Upstream version 2.0-9
No new revisions were added by this update.
Summary of changes:
.Rinstignore | 5 -
DESCRIPTION | 23 +-
MD5 | 187 +++++-----
NAMESPACE | 5 +-
R/adipart.default.R | 2 +-
R/anova.ccabyaxis.R | 3 +-
R/as.mlm.cca.R | 4 -
R/as.mlm.rda.R | 4 -
R/betadisper.R | 15 +-
R/betadiver.R | 9 +-
R/capscale.R | 2 -
R/density.anosim.R | 1 -
R/densityplot.oecosimu.R | 1 -
R/eigenvals.R | 14 +-
R/hiersimu.default.R | 2 +-
R/indpower.R | 2 +-
R/intersetcor.R | 3 -
R/multipart.default.R | 2 +-
R/oecosimu.R | 4 +-
R/ordiArrowTextXY.R | 27 ++
R/ordicloud.R | 1 -
R/ordilabel.R | 4 -
R/ordipointlabel.R | 8 +-
R/ordiresids.R | 1 -
R/ordisplom.R | 1 -
R/ordisurf.R | 122 +++++--
R/orditkplot.R | 3 -
R/ordixyplot.R | 1 -
R/plot.cca.R | 3 +-
R/plot.envfit.R | 94 ++---
R/plot.ordipointlabel.R | 11 +
R/plot.ordisurf.R | 6 +-
R/plot.poolaccum.R | 1 -
R/plot.radfit.frame.R | 1 -
R/plot.renyi.R | 1 -
R/plot.renyiaccum.R | 1 -
R/prepanel.ordi3d.R | 2 +-
R/print.betadisper.R | 11 +-
R/print.oecosimu.R | 4 +-
R/print.vectorfit.R | 5 +-
R/radlattice.R | 1 -
R/raupcrick.R | 2 +-
R/stressplot.R | 22 +-
R/text.cca.R | 2 +-
R/vegandocs.R | 9 +-
R/vegdist.R | 2 +-
build/vignette.rds | Bin 0 -> 289 bytes
inst/ChangeLog | 53 ++-
inst/NEWS.Rd | 54 ++-
inst/doc/FAQ-vegan.pdf | Bin 146861 -> 148690 bytes
inst/doc/NEWS.html | 64 +++-
inst/doc/decision-vegan.R | 152 ++++++++
inst/doc/decision-vegan.Rnw | 167 ++++-----
inst/doc/decision-vegan.pdf | Bin 281477 -> 319750 bytes
inst/doc/diversity-vegan.R | 254 ++++++++++++++
inst/doc/diversity-vegan.Rnw | 311 ++++++++---------
inst/doc/diversity-vegan.pdf | Bin 308847 -> 358270 bytes
inst/doc/intro-vegan.R | 195 +++++++++++
inst/doc/intro-vegan.Rnw | 76 ++--
inst/doc/intro-vegan.pdf | Bin 169289 -> 237324 bytes
inst/doc/vegan.bib | 99 ------
inst/doc/veganjss.sty | 24 --
man/SSarrhenius.Rd | 4 +-
man/adipart.Rd | 4 +-
man/adonis.Rd | 3 +-
man/anova.cca.Rd | 5 +-
man/betadisper.Rd | 35 +-
man/cca.Rd | 4 +-
man/clamtest.Rd | 2 +-
man/density.adonis.Rd | 7 +-
man/eventstar.Rd | 2 +-
man/make.cepnames.Rd | 2 +-
man/mantel.correlog.Rd | 3 +-
man/model.matrix.cca.Rd | 4 +-
man/monoMDS.Rd | 2 +-
man/mrpp.Rd | 4 +-
man/multipart.Rd | 2 +-
man/nobs.adonis.Rd | 2 +-
man/oecosimu.Rd | 9 +-
man/ordipointlabel.Rd | 31 +-
man/ordistep.Rd | 2 +-
man/ordisurf.Rd | 199 ++++++++---
man/pcnm.Rd | 6 +-
man/prc.Rd | 2 +-
man/predict.cca.Rd | 2 +-
man/radfit.Rd | 2 +-
man/specaccum.Rd | 4 +-
man/varpart.Rd | 92 ++---
man/vegan-internal.Rd | 7 +
man/vegan-package.Rd | 3 +-
man/vegdist.Rd | 2 +-
vignettes/.install_extras | 2 +
{inst/doc => vignettes}/FAQ-vegan.pdf | Bin 146861 -> 148690 bytes
{inst/doc => vignettes}/FAQ-vegan.texi | 31 +-
{inst/doc => vignettes}/Makefile | 4 +-
{inst/doc => vignettes}/NEWS.html | 64 +++-
{inst/doc => vignettes}/decision-vegan.Rnw | 167 ++++-----
{inst/doc => vignettes}/decision-vegan.tex | 246 +++++++------
{inst/doc => vignettes}/diversity-vegan.Rnw | 311 ++++++++---------
{inst/doc => vignettes}/diversity-vegan.tex | 500 ++++++++++++++-------------
{inst/doc => vignettes}/intro-vegan.Rnw | 76 ++--
{inst/doc => vignettes}/intro-vegan.tex | 183 +++++-----
vignettes/vegan.bib | 356 +++++++++++++++++++
vignettes/vegan.sty | 47 +++
104 files changed, 2947 insertions(+), 1569 deletions(-)
delete mode 100644 .Rinstignore
create mode 100644 R/ordiArrowTextXY.R
create mode 100644 R/plot.ordipointlabel.R
create mode 100644 build/vignette.rds
create mode 100644 inst/doc/decision-vegan.R
create mode 100644 inst/doc/diversity-vegan.R
create mode 100644 inst/doc/intro-vegan.R
delete mode 100644 inst/doc/vegan.bib
delete mode 100644 inst/doc/veganjss.sty
create mode 100644 vignettes/.install_extras
copy {inst/doc => vignettes}/FAQ-vegan.pdf (54%)
rename {inst/doc => vignettes}/FAQ-vegan.texi (96%)
rename {inst/doc => vignettes}/Makefile (86%)
copy {inst/doc => vignettes}/NEWS.html (93%)
copy {inst/doc => vignettes}/decision-vegan.Rnw (88%)
rename {inst/doc => vignettes}/decision-vegan.tex (83%)
copy {inst/doc => vignettes}/diversity-vegan.Rnw (76%)
rename {inst/doc => vignettes}/diversity-vegan.tex (69%)
copy {inst/doc => vignettes}/intro-vegan.Rnw (93%)
rename {inst/doc => vignettes}/intro-vegan.tex (86%)
create mode 100644 vignettes/vegan.bib
create mode 100644 vignettes/vegan.sty
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