[med-svn] [sra-sdk] branch upstream updated (a3ee9b3 -> a84ff91)
Charles Plessy
plessy at alioth.debian.org
Mon Oct 21 09:16:56 UTC 2013
This is an automated email from the git hooks/post-receive script.
plessy pushed a change to branch upstream
in repository sra-sdk.
from a3ee9b3 Imported Upstream version 2.3.2-4+dfsg
new a84ff91 Imported Upstream version 2.3.3-4~dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile | 39 +-
build/BUILD.linux | 2 +-
build/COMP.mac | 2 +-
build/LNKG.linux | 2 +-
build/Makefile.env | 30 +-
build/Makefile.shell | 22 +-
libs/Makefile => build/Makefile.targets | 99 +-
build/ld.linux.cmn.sh | 5 +-
build/ld.linux.dlib.sh | 14 +-
build/ld.linux.exe.sh | 12 +
build/ld.linux.slib.sh | 6 +-
build/ld.mac.cmn.sh | 5 +-
build/ld.mac.dlib.sh | 73 +-
build/ld.mac.exe.sh | 12 +
build/ld.mac.slib.sh | 6 +-
build/ld.sh | 122 +-
build/ld.unix.slib.sh | 6 +-
build/ld.win.cmn.sh | 62 +-
build/ld.win.dlib.sh | 2 +-
build/ld.win.exe.sh | 2 +-
build/sra-dflt-schema.sh | 41 +-
build/win-cc.sh | 35 +-
configuration-assistant.perl | 2 +-
interfaces/align/bam.h | 14 +-
interfaces/align/iterator.h | 8 +-
interfaces/align/reference.h | 2 +-
interfaces/align/refseq-mgr.h | 2 +-
interfaces/align/writer-alignment.h | 36 +-
interfaces/align/writer-reference.h | 14 +-
interfaces/align/writer-refseq.h | 7 +-
interfaces/align/writer-sequence.h | 3 +-
interfaces/cc/vc++/compiler.h | 2 +-
interfaces/kdb/kdb-priv.h | 13 +-
interfaces/kfg/config.h | 11 +-
interfaces/kfg/kart.h | 87 +
interfaces/{kns/impl.h => kfg/keystore-priv.h} | 80 +-
interfaces/kfg/keystore.h | 155 +
interfaces/kfg/repository.h | 31 +-
interfaces/kfs/arrayfile.h | 18 +
interfaces/kfs/directory.h | 16 +-
interfaces/kfs/impl.h | 5 +
interfaces/kfs/kfs-priv.h | 15 +-
interfaces/kfs/sra.h | 1 +
interfaces/klib/data-buffer.h | 20 +
interfaces/klib/defs.h | 29 +
interfaces/klib/log.h | 24 +-
interfaces/klib/namelist.h | 12 +-
interfaces/klib/printf.h | 19 +-
interfaces/klib/ptrie.h | 2 +-
interfaces/klib/text.h | 2 +-
interfaces/klib/writer.h | 4 +-
interfaces/kns/KCurlRequest.h | 2 +-
interfaces/kns/{manager.h => adapt.h} | 64 +-
.../kns/ascp.h | 102 +-
interfaces/kns/endpoint.h | 117 +
interfaces/kns/http.h | 278 +
interfaces/kns/socket.h | 98 +
interfaces/ktst/unit_test_suite.hpp | 8 +-
interfaces/loader/alignment-writer.h | 18 +-
interfaces/loader/common-writer.h | 16 +-
interfaces/loader/reference-writer.h | 2 +-
interfaces/ncbi/wgs-contig.vschema | 2 +-
interfaces/sra/sradb-priv.h | 88 +-
interfaces/vdb/dependencies.h | 22 +-
interfaces/vdb/vdb-priv.h | 15 +
interfaces/vdb/vdb.vschema | 4 +-
interfaces/vdb/xform.h | 4 +-
interfaces/vfs/extern.h | 5 +
interfaces/vfs/manager-priv.h | 22 +-
interfaces/vfs/manager.h | 60 +-
interfaces/vfs/path-priv.h | 211 +-
interfaces/vfs/path.h | 337 +-
interfaces/vfs/resolver.h | 75 +-
libs/Makefile | 71 +-
libs/align/Makefile | 58 +-
libs/align/bam.c | 332 +-
libs/align/pl_iterator.c | 15 +
libs/align/ref_iterator.c | 8 +-
libs/align/reference.c | 40 +-
libs/align/writer-alignment.c | 105 +-
libs/align/writer-cmn.c | 21 +-
libs/align/writer-priv.h | 7 +-
libs/align/writer-reference.c | 42 +-
libs/align/writer-refseq.c | 11 +-
libs/align/writer-sequence.c | 27 +-
libs/{ktst => ascp}/Makefile | 38 +-
.../align/alignsrc.h => libs/ascp/ascp-priv.h | 59 +-
libs/ascp/ascp.c | 692 +
libs/ascp/linux/ascp-path.c | 61 +
libs/ascp/mac/ascp-path.c | 65 +
libs/ascp/unix/connect.c | 555 +
libs/ascp/win/ascp-path.c | 26 +
libs/ascp/win/connect.c | 520 +
libs/axf/Makefile | 27 +-
libs/axf/align-ref-pos.c | 4 +-
libs/axf/cigar.c | 4 +-
libs/axf/ref-tbl-sub-select.c | 309 +-
README => libs/ext/Makefile | 33 +-
libs/{kapp => ext/bzip2}/Makefile | 134 +-
libs/{ktst => ext/curl}/Makefile | 69 +-
{tools/refseq-load => libs/ext/zlib}/Makefile | 153 +-
libs/kapp/Makefile | 34 +-
libs/kapp/tokenizer.c | 2 +-
libs/kdb/Makefile | 54 +-
libs/kdb/btree.c | 2 +-
libs/kdb/column.c | 11 +-
libs/kdb/database-cmn.c | 7 +-
libs/kdb/database.c | 4 +-
libs/kdb/dbmgr-cmn.c | 41 +-
libs/kdb/dbmgr-priv.h | 3 +-
libs/kdb/dbmgr.c | 29 +-
libs/kdb/index.c | 2 +-
libs/kdb/kdb.c | 6 +-
.../manager-priv.h => libs/kdb/libkdb.vers.h | 3 +-
.../manager-priv.h => libs/kdb/libwkdb.vers.h | 3 +-
libs/kdb/meta.c | 17 +-
libs/kdb/table.c | 8 +-
libs/kdb/wcolumn.c | 11 +-
libs/kdb/wdatabase.c | 4 +-
libs/kdb/wdbmgr.c | 2 +-
libs/kdb/wkdb.c | 6 +-
libs/kdb/wmeta.c | 15 +-
libs/kdb/wtable.c | 5 +-
libs/kfg/Makefile | 63 +-
libs/kfg/config-lex.c | 4 +-
libs/kfg/config.c | 131 +-
libs/kfg/kart.c | 608 +
libs/kfg/keystore.c | 836 +
libs/kfg/report.c | 433 -
libs/kfg/repository.c | 109 +-
libs/kfs/Makefile | 46 +-
libs/kfs/arrayfile.c | 41 +
libs/kfs/directory.c | 2 +-
libs/kfs/file.c | 2 +-
libs/kfs/lockfile.c | 2 +-
libs/kfs/mmap.c | 2 +-
libs/kfs/pmem.c | 5 +
libs/kfs/ramfile.c | 17 +-
libs/kfs/sra.c | 3 +-
libs/kfs/toc.c | 14 +-
libs/kfs/tocdir.c | 18 +-
libs/kfs/unix/sysdll.c | 12 +-
libs/kfs/win/sysdir.c | 178 +-
libs/kfs/win/sysdll.c | 25 +-
libs/klib/Makefile | 24 +-
libs/klib/data-buffer.c | 23 +-
libs/klib/judy/Makefile | 19 +-
libs/klib/printf.c | 98 +-
libs/klib/status-rc.c | 4 +-
libs/klib/status.c | 2 +-
libs/klib/text.c | 8 +-
libs/klib/unix/syswriter.c | 1 +
libs/klib/vector_namelist.c | 34 +-
libs/klib/writer.c | 2 +-
libs/kns/KCurlRequest.c | 2 +-
libs/kns/Makefile | 46 +-
libs/kns/endpoint.c | 109 +
libs/kns/entrez-fetcher.c | 2 +-
interfaces/kfs/buffile.h => libs/kns/http-priv.h | 101 +-
libs/kns/http-test.c | 368 +
libs/kns/http.c | 3002 +
libs/kns/kns_manager.c | 64 +-
libs/kns/kns_mgr_priv.h | 8 +
libs/kns/stream-priv.h | 4 +
libs/kns/stream.c | 2 +-
libs/kns/unix/sysendpoint.c | 169 +
.../cc/icc/compiler.h => libs/kns/unix/sysmgr.c | 18 +-
libs/kns/unix/syssock.c | 552 +
libs/kns/unix/sysstream.c | 251 +
libs/kns/win/sysendpoint.c | 185 +
tools/util/win/syspass.c => libs/kns/win/sysmgr.c | 42 +-
libs/kns/win/syssock.c | 663 +
libs/kns/win/sysstream.c | 232 +
libs/kproc/Makefile | 61 +-
libs/kproc/procmgr.c | 2 +-
libs/kproc/task.c | 2 +-
libs/krypto/Makefile | 45 +-
libs/krypto/aes-ncbi.aes-ni.pic.o.list |38295 ----------
libs/krypto/aes-ncbi.vec.pic.o.list |74023 -------------------
libs/krypto/aes-ncbi.vecreg.pic.o.list |75192 --------------------
libs/krypto/aes_core.c | 2 +-
libs/krypto/cipher-vec.aes-ni.pic.o.list |10909 ---
libs/krypto/cipher-vec.vec.pic.o.list |10959 ---
libs/krypto/cipher-vec.vecreg.pic.o.list |10919 ---
libs/krypto/cipher.c | 12 +-
libs/krypto/compile-test.aes-ni.pic.o.list | 592 -
libs/krypto/compile-test.vec.pic.o.list | 590 -
libs/krypto/compile-test.vecreg.pic.o.list | 592 -
libs/krypto/encfilev2.c | 2 +-
libs/krypto/no-null-ncbi.aes-ni.pic.o.list | 2539 -
libs/krypto/no-null-ncbi.vec.pic.o.list | 2540 -
libs/krypto/no-null-ncbi.vecreg.pic.o.list | 2540 -
libs/krypto/null-ncbi.vec.pic.o.list | 4406 --
libs/krypto/null-ncbi.vecreg.pic.o.list | 4406 --
libs/krypto/wgaencrypt.c | 2 +-
libs/ktst/Makefile | 13 +-
libs/ktst/testenv.cpp | 2 +
libs/ktst/unix/runprocesstestcase.cpp | 27 +-
libs/ktst/win/runprocesstestcase.cpp | 11 +
libs/kxml/Makefile | 57 +-
libs/loader/Makefile | 16 +-
libs/loader/alignment-writer.c | 56 +-
libs/loader/common-reader.c | 2 +-
libs/loader/common-writer.c | 236 +-
libs/loader/reference-writer.c | 11 +-
libs/{search => ncbi-vdb}/Makefile | 130 +-
libs/ncbi-vdb/libncbi-vdb.vers | 1 +
libs/ncbi-vdb/libncbi-wvdb.vers | 1 +
libs/search/Makefile | 31 +-
libs/search/agrep-myersunltd.c | 6 +-
libs/search/fgrep-dumb.c | 2 +-
libs/sra/Makefile | 102 +-
.../manager-priv.h => libs/sra/libsradb.vers.h | 3 +-
libs/sra/reader-cmn.c | 24 +-
libs/sra/reader-fastq.c | 2 +-
libs/sra/sra-schema.c | 4083 ++
libs/sra/sracache.c | 175 +-
libs/sra/sramgr-cmn.c | 249 +-
libs/sra/sraschema.c | 1 -
libs/sra/sratbl-cmn.c | 114 +-
libs/sraxf/Makefile | 27 +-
libs/sraxf/v0-decompress-local.h | 2 +-
libs/vdb/Makefile | 54 +-
libs/vdb/blob.c | 71 +-
libs/vdb/column-cmn.c | 14 +
libs/vdb/column-priv.h | 2 +
libs/vdb/cursor-cmn.c | 35 +-
libs/vdb/database-cmn.c | 4 +-
libs/vdb/database-depend.c | 159 +-
libs/vdb/dbmgr-cmn.c | 4 +-
libs/vdb/dbmgr.c | 10 +-
libs/vdb/delta_average.c | 4 +-
.../manager-priv.h => libs/vdb/libvdb.vers.h | 3 +-
.../manager-priv.h => libs/vdb/libwvdb.vers.h | 3 +-
libs/vdb/linker-cmn.c | 11 +-
libs/vdb/linker-int.c | 392 +-
libs/vdb/linker-priv.h | 3 +
libs/vdb/phys-cmn.c | 35 +-
libs/vdb/phys-priv.h | 5 +
libs/vdb/prod-cmn.c | 62 +-
libs/vdb/prod-priv.h | 5 +
libs/vdb/schema.c | 4 +-
libs/vdb/table-cmn.c | 4 +-
libs/vdb/wcolumn.c | 2 +-
libs/vdb/wlinker.c | 41 +-
libs/vdb/xform-priv.h | 43 +-
libs/vfs/Makefile | 72 +-
libs/{sra/sra-debug.h => vfs/keyring-priv.h} | 14 +-
libs/vfs/keyring.c | 133 +
libs/vfs/keyring.h | 110 +
libs/vfs/manager.c | 1723 +-
libs/vfs/path-priv.h | 146 +-
libs/vfs/path.c | 4664 +-
libs/vfs/resolver.c | 1974 +-
libs/vfs/unix/syskeyring.c | 174 +
libs/vfs/unix/syspath.c | 168 +-
.../{sra/sraschema-stub.c => vfs/win/syskeyring.c} | 47 +-
libs/vfs/win/syspath.c | 474 +-
libs/vxf/Makefile | 67 +-
libs/vxf/integral.c | 6 +-
libs/vxf/{integral.c => integral_0.c} | 16 +-
libs/vxf/rand_4na_2na.c | 3 +-
libs/vxf/unzip.c | 10 +-
libs/wgsxf/Makefile | 34 +-
libs/wgsxf/build_scaffold.c | 101 +-
tools/Makefile | 59 +-
tools/align-info/Makefile | 15 +-
tools/align-info/align-info.c | 1 -
tools/align-info/align-info.vers | 2 +-
tools/bam-loader/Makefile | 43 +-
tools/bam-loader/bam-load.vers | 2 +-
tools/bam-loader/loader-imp.c | 9 +-
tools/bam-loader/reference-writer.c | 6 +-
tools/{vdb-dump => cache-mgr}/Makefile | 43 +-
tools/cache-mgr/cache-mgr.c | 1332 +
tools/cache-mgr/cache-mgr.vers | 1 +
tools/cg-load/Makefile | 19 +-
tools/cg-load/cg-load.c | 2 +-
tools/cg-load/cg-load.vers | 2 +-
tools/fastq-loader/Makefile | 90 +-
tools/fastq-loader/fastq-grammar.c | 299 +-
tools/fastq-loader/fastq-lex.c | 1 +
tools/fastq-loader/fastq-loader.c | 6 +-
tools/fastq-loader/fastq-parse.h | 9 +-
tools/fastq-loader/fastq-reader.c | 9 +-
tools/fastq-loader/fastq-reader.h | 2 +-
tools/fastq-loader/latf-load.vers | 2 +-
tools/fastq-loader/loader-imp.c | 14 +-
tools/kar/Makefile | 12 +-
tools/kar/kar.c | 16 +-
tools/kar/kar.vers | 2 +-
tools/kar/sra-kar.vers | 2 +-
tools/nenctool/nenctest.c | 4 +-
tools/nenctool/nenctest.vers | 2 +-
tools/nenctool/nenctool.c | 4 +-
tools/nenctool/nenctool.vers | 2 +-
tools/nencvalid/nencvalid.c | 88 +-
tools/nencvalid/nencvalid.vers | 2 +-
tools/prefetch/Makefile | 15 +-
tools/prefetch/prefetch.c | 1274 +-
tools/prefetch/prefetch.vers | 2 +-
tools/refseq-load/context.c | 339 -
tools/refseq-load/context.h | 99 -
tools/refseq-load/definitions.h | 55 -
tools/refseq-load/refseq-load.c | 819 -
tools/refseq-load/refseq-load.vers | 1 -
tools/sra-dump/Makefile | 52 +-
tools/sra-dump/abi-dump.vers | 2 +-
tools/sra-dump/core.c | 262 +-
tools/sra-dump/factory.c | 131 +-
tools/sra-dump/factory.h | 6 +
tools/sra-dump/fastq-dump.vers | 2 +-
tools/sra-dump/fastq.c | 453 +-
tools/sra-dump/illumina-dump.vers | 2 +-
tools/sra-dump/sff-dump.vers | 2 +-
tools/sra-dump/sra-dump.vers | 2 +-
tools/sra-load/Makefile | 21 +-
tools/sra-load/abi-load.vers | 2 +-
tools/sra-load/fastq-load.vers | 2 +-
tools/sra-load/helicos-load.vers | 2 +-
tools/sra-load/illumina-load.vers | 2 +-
tools/sra-load/sff-load.vers | 2 +-
tools/sra-load/srf-load.vers | 2 +-
tools/sra-pileup/Makefile | 30 +-
tools/sra-pileup/cg_tools.c | 486 +-
tools/sra-pileup/cg_tools.h | 68 +-
tools/sra-pileup/cmdline_cmn.c | 30 +-
tools/sra-pileup/cmdline_cmn.h | 3 +-
tools/sra-pileup/matecache.c | 2 +-
tools/sra-pileup/read_fkt.c | 816 +-
tools/sra-pileup/read_fkt.h | 49 +-
tools/sra-pileup/reref.c | 33 +-
tools/sra-pileup/sam-aligned.c | 1204 +-
tools/sra-pileup/sam-dump-opts.c | 25 +-
tools/sra-pileup/sam-dump-opts.h | 5 +
tools/sra-pileup/sam-dump.c | 131 +-
tools/sra-pileup/sam-dump.vers | 2 +-
tools/sra-pileup/sam-dump3.c | 32 +-
tools/sra-pileup/sam-unaligned.c | 289 +-
tools/sra-pileup/sra-pileup.c | 1639 +-
tools/sra-pileup/sra-pileup.vers | 2 +-
tools/sra-sort/Makefile | 15 +-
tools/sra-sort/ctx.h | 4 +
tools/sra-sort/sra-sort.vers | 2 +-
tools/sra-stat/Makefile | 15 +-
tools/sra-stat/sra-stat.vers | 2 +-
tools/srapath/srapath.c | 42 +-
tools/srapath/srapath.vers | 2 +-
tools/util/Makefile | 57 +-
tools/util/kdbmeta.c | 5 +-
tools/util/kdbmeta.vers | 2 +-
tools/util/rcexplain.vers | 2 +-
tools/util/test-sra.c | 838 +-
tools/util/test-sra.vers | 2 +-
tools/util/vdb-lock.vers | 2 +-
tools/util/vdb-passwd.c | 2 +-
tools/util/vdb-passwd.vers | 2 +-
tools/util/vdb-unlock.vers | 2 +-
tools/vdb-config/Makefile | 14 +-
tools/vdb-config/vdb-config.c | 138 +-
tools/vdb-config/vdb-config.vers | 2 +-
tools/vdb-copy/Makefile | 16 +-
tools/vdb-copy/vdb-copy.vers | 2 +-
tools/vdb-decrypt/vdb-decrypt.c | 5 +-
tools/vdb-decrypt/vdb-decrypt.vers | 2 +-
tools/vdb-decrypt/vdb-encrypt.c | 6 +-
tools/vdb-decrypt/vdb-encrypt.vers | 2 +-
tools/vdb-dump/Makefile | 15 +-
tools/vdb-dump/vdb-dump-coldefs.h | 4 +
tools/vdb-dump/vdb-dump-context.c | 2 +
tools/vdb-dump/vdb-dump-context.h | 6 +
tools/vdb-dump/vdb-dump-filter.h | 4 +
tools/vdb-dump/vdb-dump-formats.h | 4 +
tools/vdb-dump/vdb-dump-helper.h | 4 +
tools/vdb-dump/vdb-dump-num-gen.h | 4 +
tools/vdb-dump/vdb-dump-row-context.h | 5 +
tools/vdb-dump/vdb-dump-str.h | 4 +
tools/vdb-dump/vdb-dump-tools.c | 1 +
tools/vdb-dump/vdb-dump-tools.h | 4 +
tools/vdb-dump/vdb-dump.c | 36 +
tools/vdb-dump/vdb-dump.vers | 2 +-
tools/vdb-validate/Makefile | 15 +-
tools/vdb-validate/vdb-validate.c | 473 +-
tools/vdb-validate/vdb-validate.vers | 2 +-
384 files changed, 32233 insertions(+), 250078 deletions(-)
copy libs/Makefile => build/Makefile.targets (66%)
create mode 100644 interfaces/kfg/kart.h
copy interfaces/{kns/impl.h => kfg/keystore-priv.h} (60%)
create mode 100644 interfaces/kfg/keystore.h
copy interfaces/kns/{manager.h => adapt.h} (60%)
rename tools/refseq-load/refseq-load-includes.h => interfaces/kns/ascp.h (53%)
create mode 100644 interfaces/kns/endpoint.h
create mode 100644 interfaces/kns/http.h
create mode 100644 interfaces/kns/socket.h
copy libs/{ktst => ascp}/Makefile (80%)
copy interfaces/align/alignsrc.h => libs/ascp/ascp-priv.h (59%)
create mode 100644 libs/ascp/ascp.c
create mode 100644 libs/ascp/linux/ascp-path.c
create mode 100644 libs/ascp/mac/ascp-path.c
create mode 100644 libs/ascp/unix/connect.c
create mode 100644 libs/ascp/win/ascp-path.c
create mode 100644 libs/ascp/win/connect.c
copy README => libs/ext/Makefile (68%)
copy libs/{kapp => ext/bzip2}/Makefile (58%)
copy libs/{ktst => ext/curl}/Makefile (71%)
rename {tools/refseq-load => libs/ext/zlib}/Makefile (58%)
copy interfaces/krypto/manager-priv.h => libs/kdb/libkdb.vers.h (97%)
copy interfaces/krypto/manager-priv.h => libs/kdb/libwkdb.vers.h (97%)
create mode 100644 libs/kfg/kart.c
create mode 100644 libs/kfg/keystore.c
delete mode 100644 libs/kfg/report.c
create mode 100644 libs/kns/endpoint.c
copy interfaces/kfs/buffile.h => libs/kns/http-priv.h (55%)
create mode 100644 libs/kns/http-test.c
create mode 100644 libs/kns/http.c
create mode 100644 libs/kns/unix/sysendpoint.c
copy interfaces/cc/icc/compiler.h => libs/kns/unix/sysmgr.c (89%)
create mode 100644 libs/kns/unix/syssock.c
create mode 100644 libs/kns/unix/sysstream.c
create mode 100644 libs/kns/win/sysendpoint.c
copy tools/util/win/syspass.c => libs/kns/win/sysmgr.c (67%)
create mode 100644 libs/kns/win/syssock.c
create mode 100644 libs/kns/win/sysstream.c
delete mode 100644 libs/krypto/aes-ncbi.aes-ni.pic.o.list
delete mode 100644 libs/krypto/aes-ncbi.vec.pic.o.list
delete mode 100644 libs/krypto/aes-ncbi.vecreg.pic.o.list
delete mode 100644 libs/krypto/cipher-vec.aes-ni.pic.o.list
delete mode 100644 libs/krypto/cipher-vec.vec.pic.o.list
delete mode 100644 libs/krypto/cipher-vec.vecreg.pic.o.list
delete mode 100644 libs/krypto/compile-test.aes-ni.pic.o.list
delete mode 100644 libs/krypto/compile-test.vec.pic.o.list
delete mode 100644 libs/krypto/compile-test.vecreg.pic.o.list
delete mode 100644 libs/krypto/no-null-ncbi.aes-ni.pic.o.list
delete mode 100644 libs/krypto/no-null-ncbi.vec.pic.o.list
delete mode 100644 libs/krypto/no-null-ncbi.vecreg.pic.o.list
delete mode 100644 libs/krypto/null-ncbi.vec.pic.o.list
delete mode 100644 libs/krypto/null-ncbi.vecreg.pic.o.list
copy libs/{search => ncbi-vdb}/Makefile (60%)
create mode 100644 libs/ncbi-vdb/libncbi-vdb.vers
create mode 100644 libs/ncbi-vdb/libncbi-wvdb.vers
copy interfaces/krypto/manager-priv.h => libs/sra/libsradb.vers.h (97%)
create mode 100644 libs/sra/sra-schema.c
copy interfaces/krypto/manager-priv.h => libs/vdb/libvdb.vers.h (97%)
copy interfaces/krypto/manager-priv.h => libs/vdb/libwvdb.vers.h (97%)
copy libs/{sra/sra-debug.h => vfs/keyring-priv.h} (87%)
create mode 100644 libs/vfs/keyring.c
create mode 100644 libs/vfs/keyring.h
create mode 100644 libs/vfs/unix/syskeyring.c
copy libs/{sra/sraschema-stub.c => vfs/win/syskeyring.c} (64%)
copy libs/vxf/{integral.c => integral_0.c} (91%)
copy tools/{vdb-dump => cache-mgr}/Makefile (84%)
create mode 100644 tools/cache-mgr/cache-mgr.c
create mode 100644 tools/cache-mgr/cache-mgr.vers
delete mode 100644 tools/refseq-load/context.c
delete mode 100644 tools/refseq-load/context.h
delete mode 100644 tools/refseq-load/definitions.h
delete mode 100644 tools/refseq-load/refseq-load.c
delete mode 100644 tools/refseq-load/refseq-load.vers
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/sra-sdk.git
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