[med-svn] r14910 - in trunk/packages/R: . r-cran-dosefinding r-cran-dosefinding/trunk r-cran-dosefinding/trunk/debian r-cran-dosefinding/trunk/debian/source

Tue Oct 22 07:29:40 UTC 2013

Author: tille
Date: 2013-10-22 07:29:39 +0000 (Tue, 22 Oct 2013)
New Revision: 14910

Added:
   trunk/packages/R/r-cran-dosefinding/
   trunk/packages/R/r-cran-dosefinding/trunk/
   trunk/packages/R/r-cran-dosefinding/trunk/debian/
   trunk/packages/R/r-cran-dosefinding/trunk/debian/README.test
   trunk/packages/R/r-cran-dosefinding/trunk/debian/changelog
   trunk/packages/R/r-cran-dosefinding/trunk/debian/compat
   trunk/packages/R/r-cran-dosefinding/trunk/debian/control
   trunk/packages/R/r-cran-dosefinding/trunk/debian/copyright
   trunk/packages/R/r-cran-dosefinding/trunk/debian/docs
   trunk/packages/R/r-cran-dosefinding/trunk/debian/rules
   trunk/packages/R/r-cran-dosefinding/trunk/debian/source/
   trunk/packages/R/r-cran-dosefinding/trunk/debian/source/format
   trunk/packages/R/r-cran-dosefinding/trunk/debian/upstream
   trunk/packages/R/r-cran-dosefinding/trunk/debian/watch
Log:
Inject R DoseFinding


Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/README.test
===================================================================

--- trunk/packages/R/r-cran-dosefinding/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/README.test	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by loading it into R with the command
+‘library(DoseFinding)’ in order to confirm its integrity.

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/changelog	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,6 @@
+r-cran-dosefinding (0.9-9-1) UNRELEASED; urgency=low
+
+  * Initial release (closes: #???)
+    TODO: Clarify nature of *.rda files with authors
+
+ -- Andreas Tille <tille at debian.org>  Tue, 22 Oct 2013 09:03:24 +0200

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/compat	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1 @@
+9

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/control	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,28 @@
+Source: r-cran-dosefinding
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-lattice,
+               r-cran-mvtnorm
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-dosefinding/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-dosefinding/trunk/
+Homepage: http://cran.r-project.org/web/packages/DoseFinding
+
+Package: r-cran-dosefinding
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${R:Depends},
+         r-cran-lattice,
+         r-cran-mvtnorm
+Description: Planning and Analyzing Dose Finding experiments
+ The DoseFinding GNU R package provides functions for the design and
+ analysis of dose-finding experiments (with focus on pharmaceutical Phase
+ II clinical trials). It provides functions for: multiple contrast tests,
+ fitting non-linear dose-response models (using Bayesian and non-Bayesian
+ estimation), calculating optimal designs and an implementation of the
+ MCPMod methodology.

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/copyright	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,30 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: DoseFinding
+Upstream-Contact:  Bjoern Bornkamp <bbnkmp at gmail.com>
+Source: http://cran.r-project.org/src/contrib/
+
+Files: *
+Copyright: 2010-2013 Bjoern Bornkamp <bbnkmp at gmail.com>, Jose Pinheiro, Frank Bretz
+License: GPL3+
+
+Files: debian/*
+Copyright: 2013 Andreas Tille <tille at debian.org>
+License: GPL3+
+
+License: GPL3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU Public
+ License can be found in `/usr/share/common-licenses/GPL-3'.
+

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/docs	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1 @@
+debian/README.test

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/rules	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-dosefinding/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/source/format	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/upstream
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/upstream	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,11 @@
+Reference:
+  Author: Jose C. Pinheiro and Björn Bornkamp and Frank Bretz
+  Title: Design and Analysis of Dose-Finding Studies Combining Multiple Comparisons and Modeling Procedures
+  Journal: Journal of Biopharmaceutical Statistics
+  Year: 2006
+  Volume: 16
+  Number: 5
+  Pages: 639-656
+  DOI: 10.1080/10543400600860428
+  PMID: 17037263
+  URL: http://www.tandfonline.com/doi/abs/10.1080/10543400600860428

Added: trunk/packages/R/r-cran-dosefinding/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-dosefinding/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-dosefinding/trunk/debian/watch	2013-10-22 07:29:39 UTC (rev 14910)
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/DoseFinding_([-\d.]*)\.tar\.gz


