[med-svn] [sra-sdk] branch meta updated (cd6289c -> e166b95)
Andreas Tille
tille at debian.org
Wed Oct 23 11:14:14 UTC 2013
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch meta
in repository sra-sdk.
from cd6289c Upload to unstable
new e166b95 Add build log for 2.3.3-4~dfsg-1_amd64
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
.gitignore | 1 -
Makefile | 110 -
README | 44 -
README-WINDOWS.txt | 144 -
README-build.txt | 259 -
README-config.txt | 58 -
build/BUILD.linux | 1 -
build/BUILD.mac | 1 -
build/BUILD.win | 1 -
build/COMP.linux | 1 -
build/COMP.mac | 1 -
build/COMP.win | 1 -
build/LNKG.linux | 1 -
build/LNKG.mac | 1 -
build/LNKG.win | 1 -
build/Makefile.clang | 80 -
build/Makefile.env | 343 -
build/Makefile.gcc | 81 -
build/Makefile.icc | 77 -
build/Makefile.linux | 82 -
build/Makefile.mac | 77 -
build/Makefile.rules | 104 -
build/Makefile.shell | 150 -
build/Makefile.targets | 114 -
build/Makefile.vc++ | 80 -
build/Makefile.win | 66 -
build/abspath.sh | 31 -
build/cc.sh | 129 -
build/increment-release.sh | 44 -
build/ld.linux.cmn.sh | 158 -
build/ld.linux.dlib.sh | 308 -
build/ld.linux.exe.sh | 322 -
build/ld.linux.gcc.sh | 47 -
build/ld.linux.icc.sh | 47 -
build/ld.linux.ln.sh | 98 -
build/ld.linux.slib.sh | 146 -
build/ld.mac.cmn.sh | 159 -
build/ld.mac.dlib.sh | 361 -
build/ld.mac.exe.sh | 340 -
build/ld.mac.gcc.sh | 53 -
build/ld.mac.ln.sh | 103 -
build/ld.mac.slib.sh | 130 -
build/ld.sh | 558 -
build/ld.unix.cmn.sh | 149 -
build/ld.unix.slib.sh | 124 -
build/ld.win.cmn.sh | 217 -
build/ld.win.dlib.sh | 327 -
build/ld.win.exe.sh | 321 -
build/ld.win.slib.sh | 135 -
build/ld.win.stub.sh | 60 -
build/ld.win.vc++.sh | 65 -
build/mac.arch.sh | 87 -
build/make-vers-inc.sh | 46 -
build/sra-dflt-schema.sh | 163 -
build/win-cc.sh | 269 -
configuration-assistant.perl | 1211 -
debian/changelog | 61 -
debian/compat | 1 -
debian/control | 73 -
debian/copyright | 211 -
debian/docs | 2 -
debian/gbp.conf | 9 -
debian/patches/10_portability.patch | 76 -
debian/patches/build-with-system-libbz2-libz.patch | 36 -
debian/patches/do_not_build_external_libs.patch | 14 -
debian/patches/hardening-format-security.patch | 43 -
debian/patches/hardening.patch | 39 -
debian/patches/series | 5 -
debian/rules | 31 -
debian/source/format | 1 -
debian/sra-toolkit-libs-dev.install | 1 -
debian/sra-toolkit-libs0.install | 1 -
debian/sra-toolkit-libs0.lintian-overrides | 3 -
debian/sra-toolkit-libs0.symbols | 6085 ----
debian/sra-toolkit.install | 3 -
debian/upstream | 12 -
debian/watch | 3 -
doc/help/html/abi-dump-help.html | 45 -
doc/help/html/abi-load-help.html | 41 -
doc/help/html/bam-load-help.html | 29 -
doc/help/html/copycat-help.html | 64 -
doc/help/html/crc32sum-help.html | 18 -
doc/help/html/fastq-dump-help.html | 88 -
doc/help/html/fastq-load-help.html | 41 -
doc/help/html/illumina-dump-help.html | 48 -
doc/help/html/illumina-load-help.html | 41 -
doc/help/html/kar-help.html | 66 -
doc/help/html/kdbmeta-help.html | 50 -
doc/help/html/kqsh-help.html | 19 -
doc/help/html/md5cp-help.html | 21 -
doc/help/html/rcexplain-help.html | 27 -
doc/help/html/sff-dump-help.html | 38 -
doc/help/html/sra-dump-help.html | 38 -
doc/help/html/sra-stat-help.html | 34 -
doc/help/html/srapath-help.html | 47 -
doc/help/html/srf-load-help.html | 41 -
doc/help/html/txt2kdb-help.html | 48 -
doc/help/html/vdb-dump-help.html | 45 -
doc/help/txt/abi-dump-help.txt | 19 -
doc/help/txt/abi-load-help.txt | 41 -
doc/help/txt/bam-loader-help.txt | 18 -
doc/help/txt/copycat-help.txt | 53 -
doc/help/txt/crc32sum-help.txt | 6 -
doc/help/txt/fastq-dump-help.txt | 57 -
doc/help/txt/fastq-load-help.txt | 41 -
doc/help/txt/illumina-dump-help.txt | 29 -
doc/help/txt/illumina-load-help.txt | 41 -
doc/help/txt/kar-help.txt | 48 -
doc/help/txt/kdbmeta-help.txt | 30 -
doc/help/txt/kqsh-help.txt | 7 -
doc/help/txt/md5cp-help.txt | 8 -
doc/help/txt/rcexplain-help.txt | 5 -
doc/help/txt/sff-dump-help.txt | 19 -
doc/help/txt/sra-dump-help.txt | 18 -
doc/help/txt/sra-stat-help.txt | 19 -
doc/help/txt/srapath-help.txt | 35 -
doc/help/txt/srf-load-help.txt | 41 -
doc/help/txt/txt2kdb-help.txt | 36 -
doc/help/txt/vdb-dump-help.txt | 34 -
interfaces/align/align-access.h | 322 -
interfaces/align/align.vschema | 1487 -
interfaces/align/alignsrc.h | 71 -
interfaces/align/bam.h | 807 -
interfaces/align/dna-reverse-cmpl.h | 43 -
interfaces/align/extern.h | 41 -
interfaces/align/iterator.h | 610 -
interfaces/align/manager.h | 69 -
interfaces/align/qstat.vschema | 87 -
interfaces/align/quality-quantizer.h | 49 -
interfaces/align/reader-refseq.h | 69 -
interfaces/align/reference.h | 150 -
interfaces/align/refseq-mgr.h | 86 -
interfaces/align/refseq.vschema | 100 -
interfaces/align/seq.vschema | 300 -
interfaces/align/writer-alignment.h | 177 -
interfaces/align/writer-cmn.h | 46 -
interfaces/align/writer-reference.h | 150 -
interfaces/align/writer-refseq.h | 89 -
interfaces/align/writer-sequence.h | 149 -
interfaces/cc/gcc/compiler.h | 39 -
interfaces/cc/gcc/i386/arch-impl.h | 384 -
interfaces/cc/gcc/i386/atomic.h | 162 -
interfaces/cc/gcc/i386/atomic32.h | 369 -
interfaces/cc/gcc/i386/bitstr.h | 39 -
interfaces/cc/gcc/i386/byteswap.h | 89 -
interfaces/cc/gcc/i386/strtol.h | 67 -
interfaces/cc/gcc/noarch/bitstr.h | 413 -
interfaces/cc/gcc/v128.h | 1088 -
interfaces/cc/gcc/va_copy.h | 49 -
interfaces/cc/gcc/x86_64/arch-impl.h | 330 -
interfaces/cc/gcc/x86_64/atomic.h | 176 -
interfaces/cc/gcc/x86_64/atomic32.h | 358 -
interfaces/cc/gcc/x86_64/atomic64.h | 358 -
interfaces/cc/gcc/x86_64/bitstr.h | 39 -
interfaces/cc/gcc/x86_64/byteswap.h | 89 -
interfaces/cc/gcc/x86_64/strtol.h | 69 -
interfaces/cc/icc/compiler.h | 39 -
interfaces/cc/vc++/compiler.h | 72 -
interfaces/cc/vc++/i386/arch-impl.h | 42 -
interfaces/cc/vc++/i386/bitstr.h | 39 -
interfaces/cc/vc++/noarch/arch-impl.h | 286 -
interfaces/cc/vc++/noarch/bitstr.h | 412 -
interfaces/cc/vc++/stdbool.h | 46 -
interfaces/cc/vc++/stdint.h | 119 -
interfaces/cc/vc++/va_copy.h | 43 -
interfaces/cc/vc++/x86_64/arch-impl.h | 42 -
interfaces/cc/vc++/x86_64/bitstr.h | 39 -
interfaces/ext/bzlib.h | 282 -
interfaces/ext/libxml/DOCBparser.h | 96 -
interfaces/ext/libxml/HTMLparser.h | 303 -
interfaces/ext/libxml/HTMLtree.h | 147 -
interfaces/ext/libxml/SAX.h | 173 -
interfaces/ext/libxml/SAX2.h | 176 -
interfaces/ext/libxml/c14n.h | 115 -
interfaces/ext/libxml/catalog.h | 182 -
interfaces/ext/libxml/chvalid.h | 230 -
interfaces/ext/libxml/debugXML.h | 217 -
interfaces/ext/libxml/dict.h | 69 -
interfaces/ext/libxml/encoding.h | 226 -
interfaces/ext/libxml/entities.h | 150 -
interfaces/ext/libxml/globals.h | 491 -
interfaces/ext/libxml/hash.h | 233 -
interfaces/ext/libxml/list.h | 137 -
interfaces/ext/libxml/nanoftp.h | 143 -
interfaces/ext/libxml/nanohttp.h | 81 -
interfaces/ext/libxml/parser.h | 1226 -
interfaces/ext/libxml/parserInternals.h | 611 -
interfaces/ext/libxml/pattern.h | 100 -
interfaces/ext/libxml/relaxng.h | 213 -
interfaces/ext/libxml/schemasInternals.h | 958 -
interfaces/ext/libxml/schematron.h | 142 -
interfaces/ext/libxml/threads.h | 84 -
interfaces/ext/libxml/tree.h | 1252 -
interfaces/ext/libxml/uri.h | 94 -
interfaces/ext/libxml/valid.h | 458 -
interfaces/ext/libxml/xinclude.h | 125 -
interfaces/ext/libxml/xlink.h | 189 -
interfaces/ext/libxml/xmlIO.h | 360 -
interfaces/ext/libxml/xmlautomata.h | 146 -
interfaces/ext/libxml/xmlerror.h | 944 -
interfaces/ext/libxml/xmlexports.h | 157 -
interfaces/ext/libxml/xmlmemory.h | 224 -
interfaces/ext/libxml/xmlmodule.h | 57 -
interfaces/ext/libxml/xmlreader.h | 424 -
interfaces/ext/libxml/xmlregexp.h | 222 -
interfaces/ext/libxml/xmlsave.h | 87 -
interfaces/ext/libxml/xmlschemas.h | 218 -
interfaces/ext/libxml/xmlschemastypes.h | 151 -
interfaces/ext/libxml/xmlstring.h | 140 -
interfaces/ext/libxml/xmlunicode.h | 202 -
interfaces/ext/libxml/xmlversion.h | 458 -
interfaces/ext/libxml/xmlwriter.h | 485 -
interfaces/ext/libxml/xpath.h | 546 -
interfaces/ext/libxml/xpathInternals.h | 630 -
interfaces/ext/libxml/xpointer.h | 114 -
interfaces/ext/magic.h | 89 -
interfaces/ext/regex.h | 557 -
interfaces/ext/zconf.h | 304 -
interfaces/ext/zlib.h | 1613 -
interfaces/insdc/insdc.h | 277 -
interfaces/insdc/insdc.vschema | 202 -
interfaces/insdc/seq.vschema | 210 -
interfaces/insdc/sra.h | 110 -
interfaces/insdc/sra.vschema | 484 -
interfaces/kapp/args.h | 339 -
interfaces/kapp/extern.h | 47 -
interfaces/kapp/loader-file.h | 122 -
interfaces/kapp/loader-meta.h | 51 -
interfaces/kapp/log-xml.h | 76 -
interfaces/kapp/main.h | 167 -
interfaces/kapp/progressbar.h | 82 -
interfaces/kapp/queue-file.h | 149 -
interfaces/kdb/btree.h | 371 -
interfaces/kdb/column.h | 302 -
interfaces/kdb/consistency-check.h | 142 -
interfaces/kdb/database.h | 270 -
interfaces/kdb/extern.h | 41 -
interfaces/kdb/index.h | 309 -
interfaces/kdb/kdb-priv.h | 156 -
interfaces/kdb/manager.h | 182 -
interfaces/kdb/meta.h | 411 -
interfaces/kdb/meta.hpp | 487 -
interfaces/kdb/namelist.h | 81 -
interfaces/kdb/table.h | 274 -
interfaces/kfg/config.h | 407 -
interfaces/kfg/extern.h | 41 -
interfaces/kfg/kart.h | 87 -
interfaces/kfg/keystore-priv.h | 92 -
interfaces/kfg/keystore.h | 155 -
interfaces/kfg/kfg-priv.h | 59 -
interfaces/kfg/repository.h | 290 -
interfaces/kfs/arc.h | 142 -
interfaces/kfs/arrayfile.h | 180 -
interfaces/kfs/buffile.h | 94 -
interfaces/kfs/bzip.h | 77 -
interfaces/kfs/cacheteefile.h | 147 -
interfaces/kfs/countfile.h | 73 -
interfaces/kfs/crc.h | 292 -
interfaces/kfs/defs.h | 115 -
interfaces/kfs/directory.h | 522 -
interfaces/kfs/directory.hpp | 582 -
interfaces/kfs/dyload.h | 223 -
interfaces/kfs/extern.h | 41 -
interfaces/kfs/ffext.h | 48 -
interfaces/kfs/ffmagic.h | 49 -
interfaces/kfs/file.h | 180 -
interfaces/kfs/file.hpp | 147 -
interfaces/kfs/fileformat.h | 140 -
interfaces/kfs/gzip.h | 77 -
interfaces/kfs/impl.h | 330 -
interfaces/kfs/kfs-priv.h | 94 -
interfaces/kfs/lockfile.h | 116 -
interfaces/kfs/md5.h | 289 -
interfaces/kfs/mmap.h | 134 -
interfaces/kfs/nullfile.h | 62 -
interfaces/kfs/pagefile.h | 191 -
interfaces/kfs/pmem.h | 157 -
interfaces/kfs/quickmount.h | 61 -
interfaces/kfs/ramfile.h | 75 -
interfaces/kfs/readheadfile.h | 86 -
interfaces/kfs/sra.h | 191 -
interfaces/kfs/subfile.h | 64 -
interfaces/kfs/tar.h | 94 -
interfaces/kfs/teefile.h | 66 -
interfaces/kfs/toc.h | 148 -
interfaces/klib/callconv.h | 53 -
interfaces/klib/checksum.h | 152 -
interfaces/klib/container.h | 455 -
interfaces/klib/data-buffer.h | 206 -
interfaces/klib/debug.h | 535 -
interfaces/klib/defs.h | 183 -
interfaces/klib/extern.h | 74 -
interfaces/klib/impl.h | 96 -
interfaces/klib/klib-priv.h | 106 -
interfaces/klib/ksort-macro.h | 257 -
interfaces/klib/log.h | 380 -
interfaces/klib/logfmt.h | 62 -
interfaces/klib/namelist.h | 165 -
interfaces/klib/namelist.hpp | 130 -
interfaces/klib/out.h | 86 -
interfaces/klib/pack.h | 138 -
interfaces/klib/pbstree.h | 287 -
interfaces/klib/printf.h | 406 -
interfaces/klib/ptrie.h | 296 -
interfaces/klib/rc.h | 483 -
interfaces/klib/refcount.h | 257 -
interfaces/klib/report.h | 98 -
interfaces/klib/sort.h | 123 -
interfaces/klib/status.h | 133 -
interfaces/klib/symbol.h | 146 -
interfaces/klib/symtab.h | 225 -
interfaces/klib/text.h | 498 -
interfaces/klib/time.h | 90 -
interfaces/klib/token.h | 254 -
interfaces/klib/trie.h | 293 -
interfaces/klib/vector.h | 428 -
interfaces/klib/vlen-encode.h | 161 -
interfaces/klib/writer.h | 170 -
interfaces/kns/KCurlRequest.h | 65 -
interfaces/kns/adapt.h | 89 -
interfaces/kns/ascp.h | 87 -
interfaces/kns/curl-file.h | 49 -
interfaces/kns/endpoint.h | 117 -
interfaces/kns/entrez-fetcher.h | 88 -
interfaces/kns/extern.h | 41 -
interfaces/kns/http.h | 278 -
interfaces/kns/impl.h | 104 -
interfaces/kns/manager.h | 85 -
interfaces/kns/socket.h | 98 -
interfaces/kns/stream.h | 126 -
interfaces/kns/url-fetcher.h | 66 -
interfaces/kproc/barrier.h | 75 -
interfaces/kproc/barrier.hpp | 79 -
interfaces/kproc/cond.h | 104 -
interfaces/kproc/cond.hpp | 107 -
interfaces/kproc/extern.h | 41 -
interfaces/kproc/impl.h | 104 -
interfaces/kproc/lock.h | 124 -
interfaces/kproc/lock.hpp | 163 -
interfaces/kproc/procmgr.h | 115 -
interfaces/kproc/q-extern.h | 41 -
interfaces/kproc/queue.h | 116 -
interfaces/kproc/sem.h | 138 -
interfaces/kproc/sem.hpp | 134 -
interfaces/kproc/task.h | 83 -
interfaces/kproc/thread.h | 91 -
interfaces/kproc/thread.hpp | 98 -
interfaces/kproc/timeout.h | 64 -
interfaces/krypto/cipher-impl.h | 1 -
interfaces/krypto/cipher-priv.h | 1 -
interfaces/krypto/cipher-test.h | 49 -
interfaces/krypto/cipher.h | 208 -
interfaces/krypto/ciphermgr-priv.h | 38 -
interfaces/krypto/ciphermgr.h | 98 -
interfaces/krypto/encfile-priv.h | 250 -
interfaces/krypto/encfile.h | 134 -
interfaces/krypto/extern.h | 66 -
interfaces/krypto/key.h | 103 -
interfaces/krypto/manager-priv.h | 26 -
interfaces/krypto/manager.h | 33 -
interfaces/krypto/reencfile.h | 91 -
interfaces/krypto/rng-impl.h | 86 -
interfaces/krypto/rng.h | 68 -
interfaces/krypto/testciphermgr.h | 58 -
interfaces/krypto/wgaencrypt.h | 128 -
interfaces/ktst/test_tools.hpp | 22 -
interfaces/ktst/unit_test.hpp | 249 -
interfaces/ktst/unit_test_suite.hpp | 481 -
interfaces/kxml/xml.h | 382 -
interfaces/loader/alignment-writer.h | 109 -
interfaces/loader/common-reader-priv.h | 300 -
interfaces/loader/common-reader.h | 486 -
interfaces/loader/common-writer.h | 192 -
interfaces/loader/mmarray.h | 50 -
interfaces/loader/reference-writer.h | 78 -
interfaces/loader/sequence-writer.h | 91 -
interfaces/ncbi/clip.vschema | 143 -
interfaces/ncbi/extern.h | 41 -
interfaces/ncbi/ncbi.vschema | 195 -
interfaces/ncbi/seq.vschema | 889 -
interfaces/ncbi/spotname.vschema | 377 -
interfaces/ncbi/sra.vschema | 743 -
interfaces/ncbi/stats.vschema | 119 -
interfaces/ncbi/wgs-contig.h | 176 -
interfaces/ncbi/wgs-contig.vschema | 660 -
interfaces/os/linux/os-native.h | 43 -
interfaces/os/mac/byteswap.h | 39 -
interfaces/os/mac/endian.h | 39 -
interfaces/os/mac/os-native.h | 114 -
interfaces/os/unix/sysalloc.h | 40 -
interfaces/os/unix/unix-native.h | 58 -
interfaces/os/win/atomic.h | 143 -
interfaces/os/win/atomic32.h | 193 -
interfaces/os/win/atomic64.h | 193 -
interfaces/os/win/byteswap.h | 44 -
interfaces/os/win/endian.h | 42 -
interfaces/os/win/os-native.h | 207 -
interfaces/os/win/strtol.h | 149 -
interfaces/os/win/sysalloc.h | 69 -
interfaces/search/extern.h | 41 -
interfaces/search/grep.h | 263 -
interfaces/search/nucstrstr.h | 153 -
interfaces/sra/454.vschema | 289 -
interfaces/sra/abi.h | 167 -
interfaces/sra/abi.vschema | 241 -
interfaces/sra/extern.h | 41 -
interfaces/sra/fastq.h | 191 -
interfaces/sra/helicos.vschema | 85 -
interfaces/sra/illumina.h | 170 -
interfaces/sra/illumina.vschema | 403 -
interfaces/sra/impl.h | 121 -
interfaces/sra/ion-torrent.vschema | 117 -
interfaces/sra/pacbio.h | 66 -
interfaces/sra/path-extern.h | 41 -
interfaces/sra/pevents.vschema | 91 -
interfaces/sra/rd-extern.h | 41 -
interfaces/sra/sch-extern.h | 41 -
interfaces/sra/sff-file.h | 110 -
interfaces/sra/sff.h | 147 -
interfaces/sra/sradb-priv.h | 407 -
interfaces/sra/sradb.h | 545 -
interfaces/sra/sradb.hpp | 441 -
interfaces/sra/srapath.h | 181 -
interfaces/sra/srapath.hpp | 176 -
interfaces/sra/sraschema.h | 72 -
interfaces/sra/types.h | 350 -
interfaces/sra/wsradb.h | 242 -
interfaces/sra/wsradb.hpp | 591 -
interfaces/vdb/blob.h | 147 -
interfaces/vdb/built-in.vschema | 397 -
interfaces/vdb/cursor.h | 441 -
interfaces/vdb/cursor.hpp | 388 -
interfaces/vdb/database.h | 334 -
interfaces/vdb/dependencies.h | 231 -
interfaces/vdb/extern.h | 47 -
interfaces/vdb/manager.h | 188 -
interfaces/vdb/manager.hpp | 371 -
interfaces/vdb/report.h | 92 -
interfaces/vdb/schema.h | 460 -
interfaces/vdb/table.h | 401 -
interfaces/vdb/table.hpp | 328 -
interfaces/vdb/types.h | 39 -
interfaces/vdb/types.hpp | 230 -
interfaces/vdb/vdb-priv.h | 314 -
interfaces/vdb/vdb.vschema | 820 -
interfaces/vdb/xform.h | 824 -
interfaces/vfs/extern.h | 47 -
interfaces/vfs/manager-priv.h | 131 -
interfaces/vfs/manager.h | 316 -
interfaces/vfs/path-priv.h | 266 -
interfaces/vfs/path.h | 242 -
interfaces/vfs/resolver.h | 267 -
libs/Makefile | 74 -
libs/align/Makefile | 173 -
libs/align/al_iterator.c | 562 -
libs/align/align-access.c | 788 -
libs/align/align_mgr.c | 108 -
libs/align/bam-priv.h | 48 -
libs/align/bam.c | 4237 ---
libs/align/debug.h | 77 -
libs/align/dna-reverse-cmpl.c | 80 -
libs/align/libalign-access.vers | 1 -
libs/align/libalign-reader.vers | 1 -
libs/align/libncbi-bam.vers | 1 -
libs/align/pl_iterator.c | 686 -
libs/align/quality-quantizer.c | 105 -
libs/align/reader-cmn.c | 317 -
libs/align/reader-cmn.h | 81 -
libs/align/reader-refseq.c | 255 -
libs/align/ref_iterator.c | 866 -
libs/align/reference-cmn.c | 43 -
libs/align/reference-cmn.h | 38 -
libs/align/reference.c | 1943 --
libs/align/refseq-mgr-priv.h | 35 -
libs/align/refseq-mgr.c | 809 -
libs/align/writer-alignment.c | 430 -
libs/align/writer-cmn.c | 568 -
libs/align/writer-priv.h | 151 -
libs/align/writer-ref.c | 481 -
libs/align/writer-ref.h | 106 -
libs/align/writer-reference.c | 2592 --
libs/align/writer-refseq.c | 178 -
libs/align/writer-sequence.c | 636 -
libs/ascp/Makefile | 80 -
libs/ascp/ascp-priv.h | 74 -
libs/ascp/ascp.c | 692 -
libs/ascp/linux/ascp-path.c | 61 -
libs/ascp/mac/ascp-path.c | 65 -
libs/ascp/unix/connect.c | 555 -
libs/ascp/win/ascp-path.c | 26 -
libs/ascp/win/connect.c | 520 -
libs/axf/Makefile | 133 -
libs/axf/align-local_ref_id.c | 130 -
libs/axf/align-local_ref_start.c | 131 -
libs/axf/align-ref-name.c | 158 -
libs/axf/align-ref-pos.c | 246 -
libs/axf/align-ref-seq-id.c | 157 -
libs/axf/align-restore-read.c | 139 -
libs/axf/cigar.c | 1914 --
libs/axf/generate-mismatch-qual.c | 148 -
libs/axf/get-sam-flags.c | 206 -
libs/axf/get_mate_align_ids.c | 271 -
libs/axf/libaxf.vers | 1 -
libs/axf/libwaxf.vers | 1 -
libs/axf/make-cmp-read_desc.c | 156 -
libs/axf/mismatch-restore-qual.c | 129 -
libs/axf/not-my-row.c | 72 -
libs/axf/project_read_from_sequence.c | 228 -
libs/axf/raw-restore-qual.c | 91 -
libs/axf/raw-restore-read.c | 114 -
libs/axf/ref-preserve_qual.c | 363 -
libs/axf/ref-restore-read.c | 162 -
libs/axf/ref-tbl-sub-select.c | 429 -
libs/axf/ref-tbl.c | 85 -
libs/axf/ref-tbl.h | 32 -
libs/axf/refseq-stats.c | 148 -
libs/axf/seq-construct-read.c | 125 -
libs/axf/seq-restore-read.c | 216 -
libs/axf/template-len.c | 127 -
libs/ext/Makefile | 55 -
libs/ext/bzip2/Makefile | 143 -
libs/ext/curl/Makefile | 103 -
libs/ext/zlib/Makefile | 150 -
libs/kapp/Makefile | 115 -
libs/kapp/args.c | 2004 --
libs/kapp/args_debug.h | 47 -
libs/kapp/libkapp.vers | 1 -
libs/kapp/libload.vers | 1 -
libs/kapp/loader-file.c | 643 -
libs/kapp/loader-meta.c | 98 -
libs/kapp/log-xml.c | 416 -
libs/kapp/main-priv.h | 71 -
libs/kapp/main.c | 431 -
libs/kapp/progressbar.c | 199 -
libs/kapp/queue-file.c | 925 -
libs/kapp/tokenizer.c | 525 -
libs/kapp/unix/sysmain.c | 232 -
libs/kapp/win/sysmain.c | 271 -
libs/kdb/Makefile | 153 -
libs/kdb/btree.c | 3055 --
libs/kdb/cc-priv.h | 51 -
libs/kdb/coldata-priv.h | 126 -
libs/kdb/coldata.c | 188 -
libs/kdb/colfmt-priv.h | 339 -
libs/kdb/colidx-priv.h | 117 -
libs/kdb/colidx.c | 184 -
libs/kdb/colidx0-priv.h | 88 -
libs/kdb/colidx0.c | 368 -
libs/kdb/colidx1-priv.h | 110 -
libs/kdb/colidx1.c | 423 -
libs/kdb/colidx2-priv.h | 99 -
libs/kdb/colidx2.c | 279 -
libs/kdb/column-cc.c | 224 -
libs/kdb/column-priv.h | 94 -
libs/kdb/column.c | 876 -
libs/kdb/database-cc.c | 338 -
libs/kdb/database-cmn.c | 495 -
libs/kdb/database-priv.h | 112 -
libs/kdb/database.c | 706 -
libs/kdb/dbcc-cmn.c | 141 -
libs/kdb/dbmgr-cmn.c | 447 -
libs/kdb/dbmgr-priv.h | 126 -
libs/kdb/dbmgr.c | 420 -
libs/kdb/idstats-priv.h | 74 -
libs/kdb/idstats.c | 269 -
libs/kdb/idxblk-priv.h | 136 -
libs/kdb/idxblk.c | 695 -
libs/kdb/index-cmn.h | 286 -
libs/kdb/index-priv.h | 134 -
libs/kdb/index.c | 1006 -
libs/kdb/kdb-priv.h | 122 -
libs/kdb/kdb.c | 938 -
libs/kdb/kdbfmt-priv.h | 76 -
libs/kdb/libkdb.vers | 1 -
libs/kdb/libkdb.vers.h | 27 -
libs/kdb/libwkdb.vers | 1 -
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libs/kdb/meta.c | 2141 --
libs/kdb/ptrieval-v1.c | 265 -
libs/kdb/ptrieval-v2.c | 396 -
libs/kdb/table-cc.c | 378 -
libs/kdb/table-priv.h | 81 -
libs/kdb/table.c | 706 -
libs/kdb/trieidx-priv.h | 74 -
libs/kdb/trieidx-v1.c | 222 -
libs/kdb/trieidx-v2.c | 1021 -
libs/kdb/trieval-v1.c | 49 -
libs/kdb/trieval-v2.c | 49 -
libs/kdb/u64idx-v3.c | 162 -
libs/kdb/wcoldata-priv.h | 172 -
libs/kdb/wcoldata.c | 342 -
libs/kdb/wcolidx-priv.h | 161 -
libs/kdb/wcolidx.c | 634 -
libs/kdb/wcolidx0-priv.h | 148 -
libs/kdb/wcolidx0.c | 747 -
libs/kdb/wcolidx1-priv.h | 147 -
libs/kdb/wcolidx1.c | 857 -
libs/kdb/wcolidx2-priv.h | 114 -
libs/kdb/wcolidx2.c | 241 -
libs/kdb/wcolumn-priv.h | 120 -
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libs/kdb/wdatabase-priv.h | 95 -
libs/kdb/wdatabase.c | 1503 -
libs/kdb/wdbmgr.c | 349 -
libs/kdb/werror-priv.h | 59 -
libs/kdb/widxblk-priv.h | 195 -
libs/kdb/widxblk.c | 546 -
libs/kdb/windex-priv.h | 230 -
libs/kdb/windex.c | 1889 --
libs/kdb/wkdb-priv.h | 160 -
libs/kdb/wkdb.c | 1417 -
libs/kdb/wmeta.c | 3526 ---
libs/kdb/wtable-priv.h | 106 -
libs/kdb/wtable.c | 1590 -
libs/kdb/wtrieidx-v1.c | 1100 -
libs/kdb/wtrieidx-v2.c | 2560 --
libs/kdb/wu64idx-v3.c | 416 -
libs/kfg/Makefile | 103 -
libs/kfg/config-grammar.c | 1725 --
libs/kfg/config-lex.c | 2511 --
libs/kfg/config-tokens.h | 75 -
libs/kfg/config.c | 3425 ---
libs/kfg/default.kfg | 45 -
libs/kfg/kart.c | 608 -
libs/kfg/keystore.c | 836 -
libs/kfg/kfg-parse.h | 81 -
libs/kfg/libkfg.vers | 1 -
libs/kfg/report-kfg.c | 505 -
libs/kfg/repository.c | 1186 -
libs/kfs/Makefile | 156 -
libs/kfs/arc.c | 4019 ---
libs/kfs/arrayfile.c | 423 -
libs/kfs/buffile-read.c | 265 -
libs/kfs/buffile-write.c | 368 -
libs/kfs/buffile.c | 573 -
libs/kfs/bzip.c | 838 -
libs/kfs/cacheteefile.c | 1689 --
libs/kfs/countfile.c | 652 -
libs/kfs/crc32.c | 1771 --
libs/kfs/dir_test.c | 54 -
libs/kfs/directory.c | 1538 -
libs/kfs/ffext.c | 805 -
libs/kfs/ffkey.c | 833 -
libs/kfs/ffmagic.c | 942 -
libs/kfs/file.c | 460 -
libs/kfs/fileformat-priv.h | 124 -
libs/kfs/fileformat.c | 290 -
libs/kfs/gzip.c | 583 -
libs/kfs/impl.h | 120 -
libs/kfs/karc-priv.h | 43 -
libs/kfs/kfs-priv.h | 47 -
libs/kfs/libkdl.vers | 1 -
libs/kfs/libkff.vers | 1 -
libs/kfs/libkfs.vers | 1 -
libs/kfs/lockfile.c | 350 -
libs/kfs/md5.c | 1901 --
libs/kfs/mmap-priv.h | 107 -
libs/kfs/mmap.c | 754 -
libs/kfs/nullfile.c | 273 -
libs/kfs/pagefile.c | 1283 -
libs/kfs/pmem.c | 1047 -
libs/kfs/quickmount.c | 967 -
libs/kfs/ramfile.c | 424 -
libs/kfs/readheadfile.c | 294 -
libs/kfs/report.c | 169 -
libs/kfs/sra.c | 486 -
libs/kfs/subfile.c | 337 -
libs/kfs/tar.c | 2639 --
libs/kfs/teefile.c | 532 -
libs/kfs/toc-priv.h | 841 -
libs/kfs/toc.c | 1738 --
libs/kfs/tocdir.c | 411 -
libs/kfs/tocentry.c | 1748 --
libs/kfs/tocfile.c | 636 -
libs/kfs/unix/sysdir-priv.h | 68 -
libs/kfs/unix/sysdir.c | 2408 --
libs/kfs/unix/sysdll.c | 1422 -
libs/kfs/unix/sysfile-priv.h | 75 -
libs/kfs/unix/sysfile.c | 1057 -
libs/kfs/unix/syslockfile.c | 215 -
libs/kfs/unix/sysmmap-priv.h | 68 -
libs/kfs/unix/sysmmap.c | 143 -
libs/kfs/win/lnk_tools.c | 518 -
libs/kfs/win/sysdir-priv.h | 92 -
libs/kfs/win/sysdir.c | 2954 --
libs/kfs/win/sysdll.c | 1410 -
libs/kfs/win/sysfile-priv.h | 68 -
libs/kfs/win/sysfile.c | 1018 -
libs/kfs/win/syslockfile.c | 67 -
libs/kfs/win/sysmmap-priv.h | 71 -
libs/kfs/win/sysmmap.c | 138 -
libs/klib/Judy.h | 629 -
libs/klib/Makefile | 140 -
libs/klib/SHA-32bit.c | 307 -
libs/klib/SHA-64bit.c | 270 -
libs/klib/bsearch.c | 77 -
libs/klib/bstpersist.c | 252 -
libs/klib/container.c | 1646 -
libs/klib/cp1252.c | 65 -
libs/klib/crc32.c | 89 -
libs/klib/data-buffer.c | 501 -
libs/klib/debug.c | 311 -
libs/klib/iso8859-1.c | 42 -
libs/klib/iso8859.c | 205 -
libs/klib/judy-vector.c | 892 -
libs/klib/judy/Judy1.h | 549 -
libs/klib/judy/JudyByCount.c | 952 -
libs/klib/judy/JudyByCountWithDefs.c | 4 -
libs/klib/judy/JudyCascade.c | 1940 --
libs/klib/judy/JudyCount.c | 1193 -
libs/klib/judy/JudyCreateBranch.c | 312 -
libs/klib/judy/JudyDecascade.c | 1204 -
libs/klib/judy/JudyDel.c | 2144 --
libs/klib/judy/JudyFirst.c | 211 -
libs/klib/judy/JudyFreeArray.c | 361 -
libs/klib/judy/JudyGet.c | 1092 -
libs/klib/judy/JudyHS.c | 770 -
libs/klib/judy/JudyHS.h | 35 -
libs/klib/judy/JudyIns.c | 1871 --
libs/klib/judy/JudyInsArray.c | 1176 -
libs/klib/judy/JudyInsertBranch.c | 133 -
libs/klib/judy/JudyL.h | 503 -
libs/klib/judy/JudyMalloc.c | 86 -
libs/klib/judy/JudyMallocIF.c | 780 -
libs/klib/judy/JudyMemActive.c | 257 -
libs/klib/judy/JudyMemUsed.c | 59 -
libs/klib/judy/JudyNext.c | 2 -
libs/klib/judy/JudyNextEmpty.c | 2 -
libs/klib/judy/JudyPrev.c | 2 -
libs/klib/judy/JudyPrevEmpty.c | 2 -
libs/klib/judy/JudyPrevNext.c | 1888 --
libs/klib/judy/JudyPrevNextEmpty.c | 1388 -
libs/klib/judy/JudyPrintJP.c | 399 -
libs/klib/judy/JudyPrivate.h | 1610 -
libs/klib/judy/JudyPrivate1L.h | 483 -
libs/klib/judy/JudyPrivateBranch.h | 777 -
libs/klib/judy/JudySL.c | 1125 -
libs/klib/judy/JudyTablesGen.c | 294 -
libs/klib/judy/Makefile | 190 -
libs/klib/judy/j__udyGet.c | 2 -
libs/klib/ksort.c | 97 -
libs/klib/libkascii.vers | 1 -
libs/klib/libklib.vers | 1 -
libs/klib/libktlog.vers | 1 -
libs/klib/libkutf8.vers | 1 -
libs/klib/log-priv.h | 96 -
libs/klib/log.c | 984 -
libs/klib/maybeswap.h | 47 -
libs/klib/md5.c | 421 -
libs/klib/namelist.c | 149 -
libs/klib/out.c | 126 -
libs/klib/pack.c | 517 -
libs/klib/pbstree-impl.c | 813 -
libs/klib/pbstree-native.c | 30 -
libs/klib/pbstree-priv.h | 664 -
libs/klib/pbstree-swapped.c | 30 -
libs/klib/pbstree.c | 395 -
libs/klib/printf.c | 3540 ---
libs/klib/ptpersist.c | 1099 -
libs/klib/ptrie.c | 1956 --
libs/klib/qsort.c | 311 -
libs/klib/rc-idx-tbl.c | 39 -
libs/klib/rc-tbl.c | 36 -
libs/klib/refcount.c | 508 -
libs/klib/report.c | 816 -
libs/klib/status-rc-strings.c | 39 -
libs/klib/status-rc.c | 156 -
libs/klib/status.c | 436 -
libs/klib/symtab.c | 736 -
libs/klib/text.c | 841 -
libs/klib/token.c | 1290 -
libs/klib/trie-priv.h | 237 -
libs/klib/trie.c | 1486 -
libs/klib/trieval.c | 168 -
libs/klib/unix/syserrcode.c | 46 -
libs/klib/unix/syslog.c | 209 -
libs/klib/unix/systime.c | 108 -
libs/klib/unix/syswriter.c | 159 -
libs/klib/unpack.c | 833 -
libs/klib/utf8.c | 836 -
libs/klib/vector.c | 626 -
libs/klib/vector_namelist.c | 331 -
libs/klib/vlen-encode.c | 773 -
libs/klib/win/sysalloc.c | 68 -
libs/klib/win/syserrcode.c | 85 -
libs/klib/win/syslog.c | 120 -
libs/klib/win/systime.c | 279 -
libs/klib/win/syswriter.c | 179 -
libs/klib/writer-priv.h | 169 -
libs/klib/writer.c | 634 -
libs/kns/KCurlFile.c | 716 -
libs/kns/KCurlRequest.c | 438 -
libs/kns/Makefile | 127 -
libs/kns/curlhdr/curl.h | 1600 -
libs/kns/curlhdr/curlver.h | 56 -
libs/kns/curlhdr/easy.h | 81 -
libs/kns/curlhdr/multi.h | 344 -
libs/kns/curlhdr/types.h | 1 -
libs/kns/endpoint.c | 109 -
libs/kns/entrez-fetcher.c | 221 -
libs/kns/http-priv.h | 97 -
libs/kns/http-test.c | 368 -
libs/kns/http.c | 3002 --
libs/kns/kns_manager.c | 311 -
libs/kns/kns_mgr_priv.h | 67 -
libs/kns/libkns.vers | 1 -
libs/kns/libkurl.vers | 1 -
libs/kns/stream-from-files.c | 168 -
libs/kns/stream-from-streams.c | 150 -
libs/kns/stream-priv.h | 36 -
libs/kns/stream.c | 336 -
libs/kns/unix/sysendpoint.c | 169 -
libs/kns/unix/sysmgr.c | 35 -
libs/kns/unix/syssock.c | 552 -
libs/kns/unix/sysstream.c | 251 -
libs/kns/url-fetcher-curl.c | 255 -
libs/kns/url-fetcher-impl.h | 109 -
libs/kns/url-fetcher.c | 129 -
libs/kns/win/sysendpoint.c | 185 -
libs/kns/win/sysmgr.c | 57 -
libs/kns/win/syssock.c | 663 -
libs/kns/win/sysstream.c | 232 -
libs/kproc/Makefile | 153 -
libs/kproc/bsd/syslock-priv.h | 62 -
libs/kproc/bsd/syslock.c | 641 -
libs/kproc/libkproc.vers | 1 -
libs/kproc/libkq.vers | 1 -
libs/kproc/libksproc.vers | 1 -
libs/kproc/linux/sysbarrier.c | 170 -
libs/kproc/linux/syslock-priv.h | 62 -
libs/kproc/linux/syslock.c | 502 -
libs/kproc/procmgr.c | 412 -
libs/kproc/queue.c | 398 -
libs/kproc/sem.c | 435 -
libs/kproc/stbarrier.c | 128 -
libs/kproc/stcond.c | 152 -
libs/kproc/stlock.c | 311 -
libs/kproc/stsem.c | 233 -
libs/kproc/stthread.c | 149 -
libs/kproc/sttimeout.c | 65 -
libs/kproc/task.c | 156 -
libs/kproc/unix/syscond-priv.h | 78 -
libs/kproc/unix/syscond.c | 320 -
libs/kproc/unix/systhread.c | 272 -
libs/kproc/unix/systimeout.c | 86 -
libs/kproc/win/syscond-priv.h | 79 -
libs/kproc/win/syscond.c | 500 -
libs/kproc/win/syslock-priv.h | 56 -
libs/kproc/win/syslock.c | 613 -
libs/krypto/Makefile | 307 -
libs/krypto/aes-byte.c | 236 -
libs/krypto/aes-ncbi-priv.h | 227 -
libs/krypto/aes-ncbi.c | 2644 --
libs/krypto/aes-priv.h | 94 -
libs/krypto/aes.c | 1 -
libs/krypto/aes_core.c | 1181 -
libs/krypto/blockcipher-impl.h | 187 -
libs/krypto/blockcipher-priv.h | 90 -
libs/krypto/blockcipher.c | 3 -
libs/krypto/cipher-byte.c | 522 -
libs/krypto/cipher-impl.h | 174 -
libs/krypto/cipher-no-vec.c | 41 -
libs/krypto/cipher-priv.h | 79 -
libs/krypto/cipher-vec.c | 808 -
libs/krypto/cipher.c | 538 -
libs/krypto/ciphermgr.c | 295 -
libs/krypto/compile-test.c | 50 -
libs/krypto/csprng.c | 163 -
libs/krypto/encfile-priv.h | 163 -
libs/krypto/encfile.c | 2122 --
libs/krypto/encfilev2.c | 2589 --
libs/krypto/key.c | 126 -
libs/krypto/libkrypto.vers | 1 -
libs/krypto/libkryptotest.vers | 1 -
libs/krypto/manager.c | 11 -
libs/krypto/ncbi-priv.h | 122 -
libs/krypto/no-null-ncbi.c | 59 -
libs/krypto/null-ncbi-priv.h | 56 -
libs/krypto/null-ncbi.c | 251 -
libs/krypto/reencfile.c | 1255 -
libs/krypto/rng-impl.h | 91 -
libs/krypto/rng.c | 120 -
libs/krypto/testcipher.c | 76 -
libs/krypto/wgaencrypt.c | 1254 -
libs/ktst/Makefile | 81 -
libs/ktst/testcase.cpp | 95 -
libs/ktst/testenv.cpp | 505 -
libs/ktst/testrunner.cpp | 77 -
libs/ktst/unix/runprocesstestcase.cpp | 125 -
libs/ktst/win/runprocesstestcase.cpp | 152 -
libs/kxml/Makefile | 124 -
libs/kxml/libkxfs.vers | 1 -
libs/kxml/libkxml.vers | 1 -
libs/kxml/xml.c | 1705 --
libs/kxml/xtoc-parsexml.c | 576 -
libs/kxml/xtoc-priv.h | 124 -
libs/kxml/xtoc.c | 3466 ---
libs/loader/Makefile | 87 -
libs/loader/alignment-writer.c | 262 -
libs/loader/common-reader.c | 614 -
libs/loader/common-writer.c | 2051 --
libs/loader/mmarray.c | 131 -
libs/loader/reference-writer.c | 462 -
libs/loader/sequence-writer.c | 361 -
libs/ncbi-vdb/Makefile | 154 -
libs/ncbi-vdb/libncbi-vdb.vers | 1 -
libs/ncbi-vdb/libncbi-wvdb.vers | 1 -
libs/search/Makefile | 97 -
libs/search/agrep-dp.c | 873 -
libs/search/agrep-myers.c | 452 -
libs/search/agrep-myersunltd.c | 1039 -
libs/search/agrep-wumanber.c | 415 -
libs/search/debug.h | 43 -
libs/search/fgrep-aho.c | 348 -
libs/search/fgrep-boyermoore.c | 458 -
libs/search/fgrep-dumb.c | 326 -
libs/search/libksrch.vers | 1 -
libs/search/libnucstrstr.vers | 1 -
libs/search/nucstrstr-icc-i386-dbg.pic.s |31488 --------------------
libs/search/nucstrstr-icc-i386-prof.pic.s | 7600 -----
libs/search/nucstrstr-icc-i386-rel.pic.s | 6711 -----
libs/search/nucstrstr-icc-x86_64-dbg.pic.s |25447 ----------------
libs/search/nucstrstr-icc-x86_64-prof.pic.s |13651 ---------
libs/search/nucstrstr-icc-x86_64-rel.pic.s | 9908 ------
libs/search/nucstrstr.c | 5313 ----
libs/search/search-priv.h | 137 -
libs/search/search.c | 285 -
libs/sra/Makefile | 234 -
libs/sra/built-in.vschema | 580 -
libs/sra/libsra-schema.vers | 1 -
libs/sra/libsradb.vers | 1 -
libs/sra/libsradb.vers.h | 27 -
libs/sra/libsrareader.vers | 1 -
libs/sra/libsraschema.vers | 1 -
libs/sra/libwsra-schema.vers | 1 -
libs/sra/libwsradb.vers | 1 -
libs/sra/libwsraschema.vers | 1 -
libs/sra/reader-abi.c | 469 -
libs/sra/reader-cmn.c | 379 -
libs/sra/reader-cmn.h | 161 -
libs/sra/reader-fastq.c | 614 -
libs/sra/reader-illumina.c | 565 -
libs/sra/reader-sff.c | 380 -
libs/sra/sra-debug.h | 42 -
libs/sra/sra-dflt-schema.c | 550 -
libs/sra/sra-priv.h | 183 -
libs/sra/sra-schema.c | 4083 ---
libs/sra/sracache.c | 559 -
libs/sra/sracol.c | 235 -
libs/sra/sramgr-cmn.c | 572 -
libs/sra/sramgr.c | 186 -
libs/sra/sraschema-priv.h | 36 -
libs/sra/sraschema-stub.c | 51 -
libs/sra/sraschema.c | 74 -
libs/sra/sratbl-cmn.c | 1397 -
libs/sra/sratbl.c | 118 -
libs/sra/types.c | 298 -
libs/sra/wsramgr.c | 165 -
libs/sra/wsraschema-stub.c | 51 -
libs/sra/wsratbl.c | 649 -
libs/sraxf/Makefile | 143 -
libs/sraxf/bio-start.c | 95 -
libs/sraxf/color-from-dna.c | 151 -
libs/sraxf/denormalize.c | 231 -
libs/sraxf/dna-from-color.c | 150 -
libs/sraxf/dynamic-454-read-descriptor.c | 303 -
libs/sraxf/extract-coordinates.c | 353 -
libs/sraxf/extract-name_coord.c | 242 -
libs/sraxf/extract-name_fmt.c | 240 -
libs/sraxf/extract-spot_name.c | 105 -
libs/sraxf/fix_read_seg_impl.h | 169 -
libs/sraxf/format-spot-name.c | 332 -
libs/sraxf/fpcodec.c | 267 -
libs/sraxf/index_lookup.c | 269 -
libs/sraxf/libsraxf.vers | 1 -
libs/sraxf/libwsraxf.vers | 1 -
libs/sraxf/make-position.c | 133 -
libs/sraxf/name-tokenizer.h | 121 -
libs/sraxf/normalize.c | 240 -
libs/sraxf/prefix-tree-to-name.c | 162 -
libs/sraxf/process-position.c | 198 -
libs/sraxf/qual4_codec.h | 43 -
libs/sraxf/qual4_decode.c | 257 -
libs/sraxf/qual4_encode.c | 232 -
libs/sraxf/read-desc.c | 143 -
libs/sraxf/read-seg-from-readn.c | 361 -
libs/sraxf/rewrite-spot-name.c | 222 -
libs/sraxf/rotate.c | 271 -
libs/sraxf/spot-desc.c | 102 -
libs/sraxf/stats.c | 501 -
libs/sraxf/stats_quality.c | 132 -
libs/sraxf/swap.c | 228 -
libs/sraxf/tokenize-spot_name-454.c | 122 -
libs/sraxf/tokenize-spot_name-abi.c | 145 -
libs/sraxf/tokenize-spot_name-helicos.c | 111 -
libs/sraxf/tokenize-spot_name-illumina.c | 150 -
libs/sraxf/tokenize-spot_name-ion-torrent.c | 135 -
libs/sraxf/untyped-priv.h | 83 -
libs/sraxf/untyped.c | 378 -
libs/sraxf/v0-decompress-init.c | 2841 --
libs/sraxf/v0-decompress-local.h | 368 -
libs/sraxf/v0-decompress.c | 1096 -
libs/sraxf/v0-decompress.h | 170 -
libs/sraxf/v0-funcs.c | 337 -
libs/sraxf/varloc.c | 105 -
libs/vdb/Makefile | 180 -
libs/vdb/blob-headers.c | 726 -
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libs/vdb/blob-priv.h | 200 -
libs/vdb/blob.c | 1573 -
libs/vdb/blob.h | 84 -
libs/vdb/cast.c | 583 -
libs/vdb/column-cmn.c | 307 -
libs/vdb/column-priv.h | 293 -
libs/vdb/column.c | 80 -
libs/vdb/compare.c | 242 -
libs/vdb/cursor-cmn.c | 2437 --
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libs/vdb/index_insert.c | 132 -
libs/vdb/index_lookup.c | 176 -
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libs/vdb/linker-priv.h | 271 -
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libs/vdb/merge.c | 215 -
libs/vdb/meta-append.c | 145 -
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libs/vdb/range-validate.c | 195 -
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libs/vdb/schema-dump.c | 683 -
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libs/vdb/table.c | 109 -
libs/vdb/transpose.c | 720 -
libs/vdb/wcolumn.c | 1069 -
libs/vdb/wcursor.c | 1194 -
libs/vdb/wdatabase.c | 661 -
libs/vdb/wdbmgr.c | 251 -
libs/vdb/wlinker.c | 96 -
libs/vdb/wphys.c | 909 -
libs/vdb/wprod.c | 439 -
libs/vdb/wtable.c | 987 -
libs/vdb/xform-priv.h | 83 -
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libs/vfs/unix/syskeyring.c | 174 -
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libs/vfs/win/syskeyring.c | 56 -
libs/vfs/win/syspath.c | 342 -
libs/vxf/Makefile | 162 -
libs/vxf/add-row-id.c | 80 -
libs/vxf/bit_or.c | 135 -
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libs/vxf/deriv.c | 111 -
libs/vxf/diff.c | 356 -
libs/vxf/echo.c | 187 -
libs/vxf/exists.c | 212 -
libs/vxf/extract_token.c | 105 -
libs/vxf/floor.c | 49 -
libs/vxf/fsplit-join.impl.h | 136 -
libs/vxf/funzip.c | 172 -
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libs/vxf/izip-common.h | 195 -
libs/vxf/izip-decode.impl.h | 162 -
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libs/vxf/izip.c | 865 -
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libs/vxf/math-funcs-impl.h | 361 -
libs/vxf/max.c | 175 -
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libs/vxf/rlencode.c | 262 -
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libs/vxf/strtonum.c | 354 -
libs/vxf/subtract-row-id.c | 83 -
libs/vxf/sum.c | 356 -
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libs/wgsxf/build_scaffold.c | 435 -
libs/wgsxf/libwgsxf.vers | 1 -
libs/wgsxf/libwwgsxf.vers | 1 -
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tools/Makefile | 83 -
tools/align-info/Makefile | 91 -
tools/align-info/align-info.c | 536 -
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tools/bam-loader/Globals.h | 90 -
tools/bam-loader/KFileHelper.c | 142 -
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tools/cg-load/writer-evidence-intervals.c | 255 -
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tools/cg-load/writer-seq.c | 135 -
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tools/fastq-loader/fastq-grammar.c | 2129 --
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tools/sra-dump/fasta_dump.c | 752 -
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tools/sra-pileup/Makefile | 130 -
tools/sra-pileup/cg_tools.c | 984 -
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tools/sra-pileup/cmdline_cmn.c | 1058 -
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tools/sra-pileup/inputfiles.c | 376 -
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tools/sra-pileup/matecache.c | 439 -
tools/sra-pileup/matecache.h | 119 -
tools/sra-pileup/out_redir.c | 120 -
tools/sra-pileup/out_redir.h | 64 -
tools/sra-pileup/read_fkt.c | 718 -
tools/sra-pileup/read_fkt.h | 82 -
tools/sra-pileup/reref.c | 501 -
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--
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