[med-svn] [fastx-toolkit] 01/01: Adding metadata for the actual 0.0.13.2-2 upload; Charles, I personally do not want to spent my time in pulling the <arch>.log files. From my perspective it is sufficient to fetch them once something might went wrong
Andreas Tille
tille at debian.org
Thu Oct 24 06:20:00 UTC 2013
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch meta
in repository fastx-toolkit.
commit 74f3c7e56c7e02811731c0202f6dfa9e08e72bb9
Author: Andreas Tille <tille at debian.org>
Date: Thu Oct 24 08:23:02 2013 +0200
Adding metadata for the actual 0.0.13.2-2 upload; Charles, I personally do not want to spent my time in pulling the <arch>.log files. From my perspective it is sufficient to fetch them once something might went wrong
---
amd64.changes | 56 -
amd64.log | 1456 ----------
armel.log | 1508 -----------
armhf.log | 1478 -----------
dsc | 45 -
fastx-toolkit_0.0.13.2-2.dsc | 34 +
fastx-toolkit_0.0.13.2-2_amd64.build | 1236 +++++++++
fastx-toolkit_0.0.13.2-2_amd64.changes | 45 +
fastx-toolkit_0.0.13.2-2_amd64.ftp-master.upload | 11 +
hurd-i386.log | 637 -----
i386.log | 1554 -----------
ia64.log | 1504 -----------
info | 13 -
kfreebsd-amd64.log | 1584 -----------
kfreebsd-i386.log | 1543 -----------
mips.log | 3066 ----------------------
mipsel.log | 1523 -----------
powerpc.log | 1493 -----------
s390.log | 2989 ---------------------
s390x.log | 1479 -----------
sparc.log | 1508 -----------
upload | 6 -
22 files changed, 1326 insertions(+), 23442 deletions(-)
diff --git a/amd64.changes b/amd64.changes
deleted file mode 100644
index 0c62977..0000000
--- a/amd64.changes
+++ /dev/null
@@ -1,56 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
-
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: source amd64
-Version: 0.0.13.2-1
-Distribution: unstable
-Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
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- 51fd9ddc1fc1ffea29d7cabc02e46dd8a1b860ec 545387 fastx-toolkit_0.0.13.2.orig.tar.bz2
- 28269c0138ca47fcbfcc307524f96a957b5a075d 16854 fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 7f418590063b9274b502f0e98c9bdc6641a0e902 130548 fastx-toolkit_0.0.13.2-1_amd64.deb
-Checksums-Sha256:
- e2d7eebc3094c654aaa845327b52424976018d4b787bce9117c0adaf5404969f 2148 fastx-toolkit_0.0.13.2-1.dsc
- df154f785c35d1f8b6f3568ea80c52f742ec03f75564adfe8e1bb0f8de8b1aed 545387 fastx-toolkit_0.0.13.2.orig.tar.bz2
- 56819e0573909407b67720c31af53f4bb4242728b40a895d4a7bf69900441735 16854 fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 93eba6fbf09c463485718f2662c666deaaa6fe54f9b32f7c3357ab573d6806b8 130548 fastx-toolkit_0.0.13.2-1_amd64.deb
-Files:
- 76e481aa0b83110e9db158f3c9d4bdf3 2148 science optional fastx-toolkit_0.0.13.2-1.dsc
- 1d1238cb3029cb1c5d1a3eea7d7d2ca8 545387 science optional fastx-toolkit_0.0.13.2.orig.tar.bz2
- 4b374b3244db3ca6f4886bfd6fd680f8 16854 science optional fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 7fc226e466b1d7360746cb9d179a53ac 130548 science optional fastx-toolkit_0.0.13.2-1_amd64.deb
-
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diff --git a/amd64.log b/amd64.log
deleted file mode 100644
index e143b73..0000000
--- a/amd64.log
+++ /dev/null
@@ -1,1456 +0,0 @@
-sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (amd64) 15 May 2012 21:07 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Distribution: unstable
-Architecture: amd64
-
-I: NOTICE: Log filtering will replace 'build/fastx-toolkit-FIOi2t/fastx-toolkit-0.0.13.2' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/fastx-toolkit-FIOi2t' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-37b3991d-0a43-46f1-b573-c1b678c18077' with '«CHROOT»'
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main Translation-en/DiffIndex
-Reading package lists...
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Local sources
-─────────────
-
-fastx-toolkit_0.0.13.2-1.dsc exists in .; copying to chroot
-
-Check arch
-──────────
-
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Er60d1/apt_archive/sbuild-build-depends-core-dummy.deb'.
-OK
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Installing build dependencies
-Reading package lists...
-Building dependency tree...
-Reading state information...
-sbuild-build-depends-core-dummy is already the newest version.
-The following packages were automatically installed and are no longer required:
- g++-4.6 libstdc++6-4.6-dev
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-dpkg-deb: building package `sbuild-build-depends-fastx-toolkit-dummy' in `/«BUILDDIR»/resolver-gompNs/apt_archive/sbuild-build-depends-fastx-toolkit-dummy.deb'.
-OK
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (apt-based resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Installing build dependencies
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- g++-4.6 libstdc++6-4.6-dev
-Use 'apt-get autoremove' to remove them.
-The following extra packages will be installed:
- autotools-dev debhelper file fontconfig-config gettext gettext-base
- groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3
- libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libpcre3 libperlio-gzip-perl libpipeline1 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-Suggested packages:
- dh-make gettext-doc groff ttf-dustin libgd-tools less www-browser
- libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev debhelper file fontconfig-config gettext gettext-base
- groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3
- libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libpcre3 libperlio-gzip-perl libpipeline1 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf sbuild-build-depends-fastx-toolkit-dummy ttf-dejavu-core
-0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded.
-Need to get 12.5 MB/15.0 MB of archives.
-After this operation, 37.7 MB of additional disk space will be used.
-Get:1 http://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
-Get:2 http://ftp.jp.debian.org/debian/ sid/main libpopt0 amd64 1.16-5 [56.2 kB]
-Get:3 http://ftp.jp.debian.org/debian/ sid/main libasprintf0c2 amd64 0.18.1.1-7 [26.5 kB]
-Get:4 http://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.11-1 [250 kB]
-Get:5 http://ftp.jp.debian.org/debian/ sid/main libpcre3 amd64 1:8.30-5 [242 kB]
-Get:6 http://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-9 [895 kB]
-Get:7 http://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.32.2-1 [2076 kB]
-Get:8 http://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.5-1 [151 kB]
-Get:9 http://ftp.jp.debian.org/debian/ sid/main libexpat1 amd64 2.1.0-1 [141 kB]
-Get:10 http://ftp.jp.debian.org/debian/ sid/main libfreetype6 amd64 2.4.9-1 [450 kB]
-Get:11 http://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:12 http://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.9.0-5 [299 kB]
-Get:13 http://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
-Get:14 http://ftp.jp.debian.org/debian/ sid/main libxau6 amd64 1:1.0.7-1 [18.8 kB]
-Get:15 http://ftp.jp.debian.org/debian/ sid/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB]
-Get:16 http://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8.1-1 [50.0 kB]
-Get:17 http://ftp.jp.debian.org/debian/ sid/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:18 http://ftp.jp.debian.org/debian/ sid/main libx11-6 amd64 2:1.4.99.901-2 [898 kB]
-Get:19 http://ftp.jp.debian.org/debian/ sid/main libxpm4 amd64 1:3.5.10-1 [49.4 kB]
-Get:20 http://ftp.jp.debian.org/debian/ sid/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1 [232 kB]
-Get:21 http://ftp.jp.debian.org/debian/ sid/main libgettextpo0 amd64 0.18.1.1-7 [142 kB]
-Get:22 http://ftp.jp.debian.org/debian/ sid/main groff-base amd64 1.21-7 [1151 kB]
-Get:23 http://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-2 [1057 kB]
-Get:24 http://ftp.jp.debian.org/debian/ sid/main file amd64 5.11-1 [53.2 kB]
-Get:25 http://ftp.jp.debian.org/debian/ sid/main gettext-base amd64 0.18.1.1-7 [152 kB]
-Get:26 http://ftp.jp.debian.org/debian/ sid/main autotools-dev all 20120210.1 [72.7 kB]
-Get:27 http://ftp.jp.debian.org/debian/ sid/main gettext amd64 0.18.1.1-7 [1966 kB]
-Get:28 http://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120513 [694 kB]
-Get:29 http://ftp.jp.debian.org/debian/ sid/main help2man amd64 1.40.9 [95.7 kB]
-Get:30 http://ftp.jp.debian.org/debian/ sid/main libperlio-gzip-perl amd64 0.18-1+b2 [19.0 kB]
-Get:31 http://ftp.jp.debian.org/debian/ sid/main libgd-gd2-perl amd64 1:2.46-3+b1 [200 kB]
-Get:32 http://ftp.jp.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:33 http://ftp.jp.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 12.5 MB in 4s (2582 kB/s)
-Selecting previously unselected package libpipeline1:amd64.
-(Reading database ... 11771 files and directories currently installed.)
-Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
-Selecting previously unselected package libpopt0:amd64.
-Unpacking libpopt0:amd64 (from .../libpopt0_1.16-5_amd64.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ...
-Selecting previously unselected package libasprintf0c2:amd64.
-Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-7_amd64.deb) ...
-Selecting previously unselected package libmagic1:amd64.
-Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ...
-Selecting previously unselected package libpcre3:amd64.
-Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ...
-Selecting previously unselected package libxml2:amd64.
-Unpacking libxml2:amd64 (from .../libxml2_2.7.8.dfsg-9_amd64.deb) ...
-Selecting previously unselected package libffi5:amd64.
-Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ...
-Selecting previously unselected package libglib2.0-0:amd64.
-Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.2-1_amd64.deb) ...
-Selecting previously unselected package libcroco3:amd64.
-Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ...
-Selecting previously unselected package libexpat1:amd64.
-Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ...
-Selecting previously unselected package libfreetype6:amd64.
-Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1_amd64.deb) ...
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-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
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-Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-5_amd64.deb) ...
-Selecting previously unselected package libjpeg8:amd64.
-Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1_amd64.deb) ...
-Selecting previously unselected package libxau6:amd64.
-Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ...
-Selecting previously unselected package libxdmcp6:amd64.
-Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ...
-Selecting previously unselected package libxcb1:amd64.
-Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-1_amd64.deb) ...
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-Selecting previously unselected package libx11-6:amd64.
-Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.4.99.901-2_amd64.deb) ...
-Selecting previously unselected package libxpm4:amd64.
-Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ...
-Selecting previously unselected package libgd2-xpm:amd64.
-Unpacking libgd2-xpm:amd64 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_amd64.deb) ...
-Selecting previously unselected package libunistring0:amd64.
-Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
-Selecting previously unselected package libgettextpo0:amd64.
-Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-7_amd64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ...
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-Selecting previously unselected package file.
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-Selecting previously unselected package autotools-dev.
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-Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
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-Unpacking gettext (from .../gettext_0.18.1.1-7_amd64.deb) ...
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-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
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-Unpacking help2man (from .../help2man_1.40.9_amd64.deb) ...
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-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_amd64.deb) ...
-Selecting previously unselected package libperlio-gzip-perl.
-Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1+b2_amd64.deb) ...
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-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
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-Unpacking sbuild-build-depends-fastx-toolkit-dummy (from .../sbuild-build-depends-fastx-toolkit-dummy.deb) ...
-Setting up libpipeline1:amd64 (1.2.1-1) ...
-Setting up libpopt0:amd64 (1.16-5) ...
-Setting up liblocale-gettext-perl (1.05-7+b1) ...
-Setting up libasprintf0c2:amd64 (0.18.1.1-7) ...
-Setting up libmagic1:amd64 (5.11-1) ...
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-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
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-
-Kernel: Linux 3.2.0-2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 g++-4.7_4.7.0-8 gcc-4.6_4.6.3-5 gcc-4.7_4.7.0-8 libc6-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.6-dev_4.6.3-5 libstdc++6-4.7-dev_4.7.0-8 linux-libc-dev_3.2.17-1
-Package versions: apt_0.9.3 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-5 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.2 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4 [...]
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
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-
-Unpack source
-─────────────
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-dpkg-source: warning: extracting unsigned source package (fastx-toolkit_0.0.13.2-1.dsc)
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
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-HOME=/sbuild-nonexistent
-LOGNAME=charles
-PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
-SCHROOT_CHROOT_NAME=sid-amd64-sbuild
-SCHROOT_COMMAND=env
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-SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-37b3991d-0a43-46f1-b573-c1b678c18077
-SCHROOT_UID=31051
-SCHROOT_USER=charles
-SHELL=/bin/sh
-TERM=xterm
-USER=charles
-USERNAME=charles
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-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
-dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture amd64
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- dpkg-source -b fastx-toolkit-0.0.13.2
-dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building fastx-toolkit using existing ./fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.2-1.debian.tar.gz
-dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.2-1.dsc
- debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
- ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
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-checking whether make sets $(MAKE)... yes
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-checking whether the C compiler works... yes
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-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... x86_64-pc-linux-gnu
-checking host system type... x86_64-pc-linux-gnu
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-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
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-checking whether we are using the GNU C++ compiler... (cached) yes
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-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
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-checking if gcc PIC flag -fPIC -DPIC works... yes
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-checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
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-checking whether to build static libraries... yes
-checking for ld used by g++... /usr/bin/ld -m elf_x86_64
-checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
-checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
-checking for g++ option to produce PIC... -fPIC -DPIC
-checking if g++ PIC flag -fPIC -DPIC works... yes
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-checking if g++ supports -c -o file.o... yes
-checking if g++ supports -c -o file.o... (cached) yes
-checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking for long long int... yes
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-checking for pkg-config... /usr/bin/pkg-config
-checking pkg-config is at least version 0.9.0... yes
-checking for GTEXTUTILS... yes
-configure: creating ./config.status
-config.status: creating Makefile
-config.status: creating doc/Makefile
-config.status: creating m4/Makefile
-config.status: creating src/Makefile
-config.status: creating src/libfastx/Makefile
-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
-config.status: creating src/fastx_trimmer/Makefile
-config.status: creating src/fastq_quality_filter/Makefile
-config.status: creating src/fastq_quality_trimmer/Makefile
-config.status: creating src/fastx_artifacts_filter/Makefile
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-config.status: creating src/seqalign_test/Makefile
-config.status: creating src/fasta_formatter/Makefile
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-config.status: creating galaxy/test-data/Makefile
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-config.status: creating build_scripts/Makefile
-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build
- make -j1
-make[1]: Entering directory `/«PKGBUILDDIR»'
-make all-recursive
-make[2]: Entering directory `/«PKGBUILDDIR»'
-Making all in m4
-make[3]: Entering directory `/«PKGBUILDDIR»/m4'
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-make[3]: Leaving directory `/«PKGBUILDDIR»/m4'
-Making all in src
-make[3]: Entering directory `/«PKGBUILDDIR»/src'
-Making all in libfastx
-make[4]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-Making all in fastx_quality_stats
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-Making all in fastq_quality_converter
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-Making all in fastq_to_fasta
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
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-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-Making all in fastq_quality_trimmer
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-Making all in fastx_artifacts_filter
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-Making all in fastx_reverse_complement
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-Making all in fastx_collapser
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
-Making all in fastx_uncollapser
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-Making all in seqalign_test
-make[4]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
-Making all in fasta_formatter
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
-Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
-make[4]: Entering directory `/«PKGBUILDDIR»/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src'
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-Making all in doc
-make[3]: Entering directory `/«PKGBUILDDIR»/doc'
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-Making all in galaxy
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy'
-Making all in tools
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
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-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
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-Making all in test-data
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
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-Making all in static
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
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-Making all in tool-data
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
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-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-Making all in scripts
-make[3]: Entering directory `/«PKGBUILDDIR»/scripts'
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-Making all in build_scripts
-make[3]: Entering directory `/«PKGBUILDDIR»/build_scripts'
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- dh_auto_test
- make -j1 check
-make[1]: Entering directory `/«PKGBUILDDIR»'
-Making check in m4
-make[2]: Entering directory `/«PKGBUILDDIR»/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/«PKGBUILDDIR»/m4'
-Making check in src
-make[2]: Entering directory `/«PKGBUILDDIR»/src'
-Making check in libfastx
-make[3]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
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-make[3]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
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-Making check in fastq_quality_converter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
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-Making check in fastq_to_fasta
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
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-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
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-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
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-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
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-Making check in fastx_reverse_complement
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-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-Making check in fastx_collapser
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-Making check in fastx_uncollapser
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-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-Making check in seqalign_test
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-Making check in fasta_formatter
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-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
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-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
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-Making check in fastq_masker
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
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-make[3]: Nothing to be done for `check-am'.
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-Making check in doc
-make[2]: Entering directory `/«PKGBUILDDIR»/doc'
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-Making check in galaxy
-make[2]: Entering directory `/«PKGBUILDDIR»/galaxy'
-Making check in tools
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
-Making check in fastx_toolkit
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-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
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-Making check in test-data
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-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-make[2]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-Making check in scripts
-make[2]: Entering directory `/«PKGBUILDDIR»/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/«PKGBUILDDIR»/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/«PKGBUILDDIR»/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
-make[2]: Entering directory `/«PKGBUILDDIR»'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/«PKGBUILDDIR»'
-make[1]: Leaving directory `/«PKGBUILDDIR»'
- fakeroot debian/rules binary
-dh binary
- dh_testroot
- dh_prep
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs
- install -d debian/fastx-toolkit
- dh_auto_install
- make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/«PKGBUILDDIR»'
-Making install in m4
-make[2]: Entering directory `/«PKGBUILDDIR»/m4'
-make[3]: Entering directory `/«PKGBUILDDIR»/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/«PKGBUILDDIR»/m4'
-make[2]: Leaving directory `/«PKGBUILDDIR»/m4'
-Making install in src
-make[2]: Entering directory `/«PKGBUILDDIR»/src'
-Making install in libfastx
-make[3]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
-make[4]: Entering directory `/«PKGBUILDDIR»/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src/fastq_masker'
-make[3]: Entering directory `/«PKGBUILDDIR»/src'
-make[4]: Entering directory `/«PKGBUILDDIR»/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/src'
-make[3]: Leaving directory `/«PKGBUILDDIR»/src'
-make[2]: Leaving directory `/«PKGBUILDDIR»/src'
-Making install in doc
-make[2]: Entering directory `/«PKGBUILDDIR»/doc'
-make[3]: Entering directory `/«PKGBUILDDIR»/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/doc'
-make[2]: Leaving directory `/«PKGBUILDDIR»/doc'
-Making install in galaxy
-make[2]: Entering directory `/«PKGBUILDDIR»/galaxy'
-Making install in tools
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static/fastx_icons'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-make[5]: Entering directory `/«PKGBUILDDIR»/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy/tool-data'
-make[3]: Entering directory `/«PKGBUILDDIR»/galaxy'
-make[4]: Entering directory `/«PKGBUILDDIR»/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-make[3]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-make[2]: Leaving directory `/«PKGBUILDDIR»/galaxy'
-Making install in scripts
-make[2]: Entering directory `/«PKGBUILDDIR»/scripts'
-make[3]: Entering directory `/«PKGBUILDDIR»/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/scripts'
-make[2]: Leaving directory `/«PKGBUILDDIR»/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/«PKGBUILDDIR»/build_scripts'
-make[3]: Entering directory `/«PKGBUILDDIR»/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
-make[2]: Leaving directory `/«PKGBUILDDIR»/build_scripts'
-make[2]: Entering directory `/«PKGBUILDDIR»'
-make[3]: Entering directory `/«PKGBUILDDIR»'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/«PKGBUILDDIR»'
-make[2]: Leaving directory `/«PKGBUILDDIR»'
-make[1]: Leaving directory `/«PKGBUILDDIR»'
- debian/rules override_dh_install
-make[1]: Entering directory `/«PKGBUILDDIR»'
-dh_install
-rm --recursive /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/«PKGBUILDDIR»'
- dh_installdocs
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/«PKGBUILDDIR»'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/«PKGBUILDDIR»'
- dh_installexamples
- debian/rules override_dh_installman
-make[1]: Entering directory `/«PKGBUILDDIR»'
-mkdir -p /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_formatter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_masker > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_clipper > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_collapser > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_renamer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_trimmer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/«PKGBUILDDIR»'
- dh_installcatalogs
- dh_installcron
- dh_installdebconf
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen
- dh_installifupdown
- dh_installinfo
- dh_installinit
- dh_installmenu
- dh_installmime
- dh_installmodules
- dh_installlogcheck
- dh_installlogrotate
- dh_installpam
- dh_installppp
- dh_installudev
- dh_installwm
- dh_installxfonts
- dh_installgsettings
- dh_bugfiles
- dh_ucf
- dh_lintian
- dh_gconf
- dh_icons
- dh_perl
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal
- dh_link
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.s [...]
- gzip -9nf usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.s [...]
- cd '/«PKGBUILDDIR»'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- dh_makeshlibs
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/ [...]
- dh_installdeb
- dh_gencontrol
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_amd64.deb'.
- dpkg-genchanges >../fastx-toolkit_0.0.13.2-1_amd64.changes
-dpkg-genchanges: including full source code in upload
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: full upload (original source is included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-2107
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_amd64.changes:
-───────────────────────────────────────
-
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: source amd64
-Version: 0.0.13.2-1
-Distribution: unstable
-Urgency: low
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 15df3de6324e6e9a1c90d61d2e48f328034419fa 1262 fastx-toolkit_0.0.13.2-1.dsc
- 51fd9ddc1fc1ffea29d7cabc02e46dd8a1b860ec 545387 fastx-toolkit_0.0.13.2.orig.tar.bz2
- 28269c0138ca47fcbfcc307524f96a957b5a075d 16854 fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 7f418590063b9274b502f0e98c9bdc6641a0e902 130548 fastx-toolkit_0.0.13.2-1_amd64.deb
-Checksums-Sha256:
- 83bed5c4dbf3b33393a4270ec49aa0e3b62c594b6dd365c5ae94d69d430556ca 1262 fastx-toolkit_0.0.13.2-1.dsc
- df154f785c35d1f8b6f3568ea80c52f742ec03f75564adfe8e1bb0f8de8b1aed 545387 fastx-toolkit_0.0.13.2.orig.tar.bz2
- 56819e0573909407b67720c31af53f4bb4242728b40a895d4a7bf69900441735 16854 fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 93eba6fbf09c463485718f2662c666deaaa6fe54f9b32f7c3357ab573d6806b8 130548 fastx-toolkit_0.0.13.2-1_amd64.deb
-Files:
- 79f2a799112e816b42eae8cea9bc1cb7 1262 science optional fastx-toolkit_0.0.13.2-1.dsc
- 1d1238cb3029cb1c5d1a3eea7d7d2ca8 545387 science optional fastx-toolkit_0.0.13.2.orig.tar.bz2
- 4b374b3244db3ca6f4886bfd6fd680f8 16854 science optional fastx-toolkit_0.0.13.2-1.debian.tar.gz
- 7fc226e466b1d7360746cb9d179a53ac 130548 science optional fastx-toolkit_0.0.13.2-1_amd64.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_amd64.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 130548 bytes: control archive=2140 bytes.
- 1078 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: amd64
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 449
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/bin/
--rwxr-xr-x root/root 18680 2012-05-15 21:07 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18672 2012-05-15 21:07 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 2764 2012-05-15 21:07 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 27312 2012-05-15 21:07 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 18672 2012-05-15 21:07 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 18680 2012-05-15 21:07 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 5380 2012-05-15 21:07 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 5896 2012-05-15 21:07 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 18672 2012-05-15 21:07 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 14576 2012-05-15 21:07 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 18680 2012-05-15 21:07 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 6069 2012-05-15 21:07 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 18664 2012-05-15 21:07 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 51952 2012-05-15 21:07 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 27192 2012-05-15 21:07 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 18832 2012-05-15 21:07 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 18664 2012-05-15 21:07 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 18680 2012-05-15 21:07 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 22848 2012-05-15 21:07 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 13925 2012-05-15 21:07 ./usr/bin/fastx_barcode_splitter.pl
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/share/man/man1/
--rw-r--r-- root/root 904 2012-05-15 21:07 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 557 2012-05-15 21:07 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 661 2012-05-15 21:07 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 638 2012-05-15 21:07 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 21:07 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 645 2012-05-15 21:07 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 468 2012-05-15 21:07 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 599 2012-05-15 21:07 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 688 2012-05-15 21:07 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 590 2012-05-15 21:07 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 929 2012-05-15 21:07 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 583 2012-05-15 21:07 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 2196 2012-05-15 21:07 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 558 2012-05-15 21:07 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 922 2012-05-15 21:07 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 613 2012-05-15 21:07 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 728 2012-05-15 21:07 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 518 2012-05-15 21:07 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 505 2012-05-15 21:07 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 659 2012-05-15 21:07 ./usr/share/man/man1/fastq_quality_filter.1.gz
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 21:07 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 425 2012-04-13 05:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-13 05:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 372 2012-04-13 05:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 37701 2012-05-15 12:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 802 2012-05-15 21:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 482 2012-05-15 12:39 ./usr/share/doc/fastx-toolkit/README.Debian
-lrwxrwxrwx root/root 0 2012-05-15 21:07 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-lintian
-───────
-
-I: fastx-toolkit: spelling-error-in-binary usr/bin/fastq_masker paramter parameter
-W: fastx-toolkit: script-with-language-extension usr/bin/fasta_clipping_histogram.pl
-W: fastx-toolkit: script-with-language-extension usr/bin/fastq_quality_boxplot_graph.sh
-W: fastx-toolkit: script-with-language-extension usr/bin/fastx_barcode_splitter.pl
-W: fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_graph.sh
-W: fastx-toolkit: script-with-language-extension usr/bin/fastx_nucleotide_distribution_line_graph.sh
-W: fastx-toolkit: manpage-has-errors-from-man usr/share/man/man1/fastx_barcode_splitter.pl.1.gz 59: warning [p 1, 11.0i]: cannot adjust line
-I: fastx-toolkit: hyphen-used-as-minus-sign usr/share/man/man1/fastx_barcode_splitter.pl.1.gz:59
-
-I: Lintian run was successful.
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /«BUILDDIR»
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: amd64
-Build-Space: 11400
-Build-Time: 17
-Distribution: unstable
-Install-Time: 9
-Job: fastx-toolkit_0.0.13.2-1.dsc
-Lintian: pass
-Package: fastx-toolkit
-Package-Time: 29
-Source-Version: 0.0.13.2-1
-Space: 11400
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-2107
-Build needed 00:00:29, 11400k disc space
diff --git a/armel.log b/armel.log
deleted file mode 100644
index a298345..0000000
--- a/armel.log
+++ /dev/null
@@ -1,1508 +0,0 @@
-From buildd at antheil.debian.org Tue May 15 14:27:15 2012
-Return-path: <buildd at antheil.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
- id 1SUIiZ-000070-AH
- for logs at buildd.debian.org; Tue, 15 May 2012 14:27:15 +0000
-Received: from antheil.islands.arm.com ([217.140.96.60]
- helo=antheil.debian.org)
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=antheil.debian.org, EMAIL=hostmaster at antheil.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
- id 1SUIiY-0000Fh-8I
- for logs at buildd.debian.org; Tue, 15 May 2012 14:27:14 +0000
-Received: from buildd by antheil.debian.org with local (Exim 4.72)
- (envelope-from <buildd at antheil.debian.org>)
- id 1SUIiX-0002X4-2R; Tue, 15 May 2012 14:27:13 +0000
-Date: Tue, 15 May 2012 14:27:13 +0000
-Message-Id: <E1SUIiX-0002X4-2R at antheil.debian.org>
-From: buildd on antheil <buildd at antheil.debian.org>
-To: buildd-porters at antheil.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on armel
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on antheil.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (armel) 15 mai 2012 14:17 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: armel
-Get:1 http://incoming.debian.org unstable InRelease [234 kB]
-Get:2 http://ftp.uk.debian.org unstable InRelease [234 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6293 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:7 http://ftp.uk.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.uk.debian.org unstable/non-free Sources [96.8 kB]
-Get:9 http://ftp.uk.debian.org unstable/main armel Packages [5841 kB]
-Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [36.7 kB]
-Get:11 http://ftp.uk.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:12 http://ftp.uk.debian.org unstable/main Translation-en [3949 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:15 http://incoming.debian.org unstable/main armel Packages [5841 kB]
-Get:16 http://incoming.debian.org unstable/contrib armel Packages [36.7 kB]
-Get:17 http://incoming.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:18 http://incoming.debian.org unstable/main Translation-en [3949 kB]
-Get:19 http://incoming.debian.org Sources [65.2 kB]
-Get:20 http://incoming.debian.org Packages [790 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.9 MB in 2min 9s (261 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (476 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
-gcc: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 liblocale-gettext-perl
- libmagic1 libpcre3 libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf
- ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libpcre3 libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0
- libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db
- pkg-config po-debconf ttf-dejavu-core
-0 upgraded, 45 newly installed, 0 to remove and 22 not upgraded.
-Need to get 14.8 MB of archives.
-After this operation, 37.0 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.1-1 [34.9 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpopt0 armel 1.16-5 [56.3 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main liblocale-gettext-perl armel 1.05-7+b1 [19.8 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-7 [26.3 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.11-1 [251 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 1:8.30-5 [241 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-9 [819 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.32.2-1 [1962 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.5-1 [142 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.1.0-1 [116 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.9-1 [401 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.9.0-5 [287 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8d-1 [153 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.49-1 [182 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.7-1 [17.6 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.1-1 [25.3 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.8.1-1 [42.8 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.99.901-2 [838 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxpm4 armel 1:3.5.10-1 [44.8 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libgd2-xpm armel 2.0.36~rc1~dfsg-6.1 [225 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-7 [130 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.1 [208 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-7 [1071 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.1-2 [1034 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.11-1 [52.9 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-7 [135 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-7 [1874 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main help2man armel 1.40.9 [94.8 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libgtextutils0 armel 0.6.2-1 [21.2 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libgtextutils-dev armel 0.6.2-1 [26.6 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libperlio-gzip-perl armel 0.18-1+b2 [17.8 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main pkg-config armel 0.26-1 [56.8 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libgd-gd2-perl armel 1:2.46-3+b1 [195 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 14.8 MB in 6s (2251 kB/s)
-Selecting previously unselected package libpipeline1:armel.
-(Reading database ... 10643 files and directories currently installed.)
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-Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig- [...]
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture armel
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=arm-linux-gnueabi --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/arm-linux-gnueabi --libexecdir=\${prefix}/lib/arm-linux-gnueabi --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
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-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
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-configure: creating ./config.status
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-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
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-config.status: creating src/fasta_formatter/Makefile
-config.status: creating src/fasta_nucleotide_changer/Makefile
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-config.status: creating src/fastq_masker/Makefile
-config.status: creating galaxy/Makefile
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-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
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-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/ [...]
- gzip -9nf usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/ [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastx_collapser d [...]
-dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fastx_uncollapser contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin.
-dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fasta_formatter contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin.
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_armel.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1427
-
-fastx-toolkit_0.0.13.2-1_armel.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: armel
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: armel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 02bd6d710c8811efbeb7408da3f1fa6e0c154b49 138880 fastx-toolkit_0.0.13.2-1_armel.deb
-Checksums-Sha256:
- 5efa3e920d9de75f76dcaafc9b276dd3f228e93e6a39ead3cdd817b789958b83 138880 fastx-toolkit_0.0.13.2-1_armel.deb
-Files:
- 7051d7e10dcc2dac80e942d3309d14e0 138880 science optional fastx-toolkit_0.0.13.2-1_armel.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_armel.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 138880 bytes: control archive= 2145 bytes.
- 1078 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: armel
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 466
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./
-drwxr-xr-x root/root 0 2012-05-15 14:25 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/bin/
--rwxr-xr-x root/root 17948 2012-05-15 14:26 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 26164 2012-05-15 14:26 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 17944 2012-05-15 14:26 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 17952 2012-05-15 14:26 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18032 2012-05-15 14:26 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 17944 2012-05-15 14:26 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5896 2012-05-15 14:25 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 17948 2012-05-15 14:26 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 17944 2012-05-15 14:26 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 34540 2012-05-15 14:26 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 2764 2012-05-15 14:25 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 17952 2012-05-15 14:26 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 5380 2012-05-15 14:25 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 55124 2012-05-15 14:26 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 13925 2012-05-15 14:25 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 17948 2012-05-15 14:26 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 6069 2012-05-15 14:25 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 17952 2012-05-15 14:26 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 17940 2012-05-15 14:26 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 34564 2012-05-15 14:26 ./usr/bin/fastx_uncollapser
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 14:26 ./usr/share/man/man1/
--rw-r--r-- root/root 728 2012-05-15 14:26 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 659 2012-05-15 14:26 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 2211 2012-05-15 14:26 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 468 2012-05-15 14:26 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 518 2012-05-15 14:26 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 929 2012-05-15 14:26 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 688 2012-05-15 14:26 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 661 2012-05-15 14:26 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 613 2012-05-15 14:26 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 904 2012-05-15 14:26 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 645 2012-05-15 14:26 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 922 2012-05-15 14:26 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 558 2012-05-15 14:26 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 557 2012-05-15 14:26 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 599 2012-05-15 14:26 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 589 2012-05-15 14:26 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 14:26 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 638 2012-05-15 14:26 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 583 2012-05-15 14:26 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 505 2012-05-15 14:26 ./usr/share/man/man1/fastx_collapser.1.gz
-lrwxrwxrwx root/root 0 2012-05-15 14:26 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-armel-sbuild-5bb9b515-587d-468d-a664-5aef72cf583e/build/buildd-fastx-toolkit_0.0.13.2-1-armel-w3iYVY
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: armel
-Build-Space: 8808
-Build-Time: 229
-Distribution: sid
-Install-Time: 163
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 568
-Source-Version: 0.0.13.2-1
-Space: 8808
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1427
-Build needed 00:09:28, 8808k disc space
-Signature with key '6ED1FB5A' requested:
-
diff --git a/armhf.log b/armhf.log
deleted file mode 100644
index 38947cc..0000000
--- a/armhf.log
+++ /dev/null
@@ -1,1478 +0,0 @@
-From buildd at henze.debian.org Tue May 15 12:46:34 2012
-Return-path: <buildd at henze.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at henze.debian.org>)
- id 1SUH98-0008DV-3y
- for logs at buildd.debian.org; Tue, 15 May 2012 12:46:34 +0000
-Received: from [217.140.96.70] (helo=henze.debian.org)
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=henze.debian.org, EMAIL=hostmaster at henze.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at henze.debian.org>)
- id 1SUH96-00038q-Uz
- for logs at buildd.debian.org; Tue, 15 May 2012 12:46:33 +0000
-Received: from buildd by henze.debian.org with local (Exim 4.77)
- (envelope-from <buildd at henze.debian.org>)
- id 1SUH90-0006qM-Ug; Tue, 15 May 2012 12:46:27 +0000
-From: buildd on henze <buildd at henze.debian.org>
-To: logs at buildd.debian.org,buildd-porters at henze.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on armhf
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1SUH90-0006qM-Ug at henze.debian.org>
-Date: Tue, 15 May 2012 12:46:26 +0000
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on henze.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (armhf) 15 May 2012 12:39 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: armhf
-Get:1 http://ftp.uk.debian.org unstable InRelease [234 kB]
-Get:2 http://incoming.debian.org unstable InRelease [234 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6293 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [54.7 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [96.8 kB]
-Get:8 http://ftp.uk.debian.org unstable/main armhf Packages [5776 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib armhf Packages [35.6 kB]
-Get:10 http://ftp.uk.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:11 http://ftp.uk.debian.org unstable/main Translation-en [3949 kB]
-Get:12 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:14 http://incoming.debian.org unstable/main armhf Packages [5776 kB]
-Get:15 http://incoming.debian.org unstable/contrib armhf Packages [35.6 kB]
-Get:16 http://incoming.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:17 http://incoming.debian.org unstable/main Translation-en [3949 kB]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org Sources [64.3 kB]
-Get:20 http://incoming.debian.org Packages [789 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 2min 2s (275 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (346 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-32)
-gcc: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 libmagic1 libpcre3
- libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6
- libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 libmagic1 libpcre3
- libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-0 upgraded, 44 newly installed, 0 to remove and 22 not upgraded.
-Need to get 14.4 MB of archives.
-After this operation, 34.2 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.1-1 [33.2 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpopt0 armhf 1.16-5 [53.6 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-7 [26.0 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.11-1 [247 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.30-5 [240 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.7.8.dfsg-9 [779 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.32.2-1 [1895 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.5-1 [134 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-1 [109 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armhf 2.4.9-1 [380 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armhf 2.9.0-5 [280 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armhf 8d-1 [121 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armhf 1.2.49-1 [176 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armhf 1:1.0.7-1 [17.3 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armhf 1:1.1.1-1 [25.0 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armhf 1.8.1-1 [41.4 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armhf 2:1.4.99.901-2 [812 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxpm4 armhf 1:3.5.10-1 [42.9 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libgd2-xpm armhf 2.0.36~rc1~dfsg-6.1 [218 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-7 [121 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.1 [203 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-7 [1027 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.1-2 [1012 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.11-1 [52.8 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-7 [131 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-7 [1826 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main help2man armhf 1.40.9 [93.0 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libgtextutils0 armhf 0.6.2-1 [20.2 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libgtextutils-dev armhf 0.6.2-1 [26.0 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libperlio-gzip-perl armhf 0.18-1 [17.2 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main pkg-config armhf 0.26-1+b1 [55.6 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libgd-gd2-perl armhf 1:2.46-3 [194 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 14.4 MB in 4s (3011 kB/s)
-Selecting previously unselected package libpipeline1:armhf.
-(Reading database ... 10773 files and directories currently installed.)
-Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ...
-Selecting previously unselected package libpopt0:armhf.
-Unpacking libpopt0:armhf (from .../libpopt0_1.16-5_armhf.deb) ...
-Selecting previously unselected package libasprintf0c2:armhf.
-Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-7_armhf.deb) ...
-Selecting previously unselected package libmagic1:armhf.
-Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ...
-Selecting previously unselected package libpcre3:armhf.
-Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ...
-Selecting previously unselected package libxml2:armhf.
-Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ...
-Selecting previously unselected package libffi5:armhf.
-Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
-Selecting previously unselected package libglib2.0-0:armhf.
-Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.2-1_armhf.deb) ...
-Selecting previously unselected package libcroco3:armhf.
-Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ...
-Selecting previously unselected package libexpat1:armhf.
-Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ...
-Selecting previously unselected package libfreetype6:armhf.
-Unpacking libfreetype6:armhf (from .../libfreetype6_2.4.9-1_armhf.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:armhf.
-Unpacking libfontconfig1:armhf (from .../libfontconfig1_2.9.0-5_armhf.deb) ...
-Selecting previously unselected package libjpeg8:armhf.
-Unpacking libjpeg8:armhf (from .../libjpeg8_8d-1_armhf.deb) ...
-Selecting previously unselected package libpng12-0:armhf.
-Unpacking libpng12-0:armhf (from .../libpng12-0_1.2.49-1_armhf.deb) ...
-Selecting previously unselected package libxau6:armhf.
-Unpacking libxau6:armhf (from .../libxau6_1%3a1.0.7-1_armhf.deb) ...
-Selecting previously unselected package libxdmcp6:armhf.
-Unpacking libxdmcp6:armhf (from .../libxdmcp6_1%3a1.1.1-1_armhf.deb) ...
-Selecting previously unselected package libxcb1:armhf.
-Unpacking libxcb1:armhf (from .../libxcb1_1.8.1-1_armhf.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:armhf.
-Unpacking libx11-6:armhf (from .../libx11-6_2%3a1.4.99.901-2_armhf.deb) ...
-Selecting previously unselected package libxpm4:armhf.
-Unpacking libxpm4:armhf (from .../libxpm4_1%3a3.5.10-1_armhf.deb) ...
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- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture armhf
- fakeroot debian/rules clean
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- rm -f debian/files
- find . \( \( -type f -a \
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- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
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-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making all in fastx_quality_stats
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making all in fastq_quality_converter
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
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-Making all in fastq_to_fasta
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
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-Making all in fastq_quality_filter
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
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-Making all in fastq_quality_trimmer
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 u [...]
- gzip -9nf usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 u [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_masker debian/fas [...]
-dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fastx_uncollapser contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin.
-dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fasta_formatter contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin.
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_armhf.deb'.
- dpkg-genchanges -B -marmhf Build Daemon (henze) <buildd_armhf-henze at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_armhf.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1246
-
-fastx-toolkit_0.0.13.2-1_armhf.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: armhf
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: armhf Build Daemon (henze) <buildd_armhf-henze at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 719d9a7f5bede695b335d706eca9f253c60946e9 132308 fastx-toolkit_0.0.13.2-1_armhf.deb
-Checksums-Sha256:
- ef2134571fb164acff27cb5f63c9ebc5b883ca260f650c1ac01508b879818278 132308 fastx-toolkit_0.0.13.2-1_armhf.deb
-Files:
- 5801c910f5b733f73cdcc4f890239bbc 132308 science optional fastx-toolkit_0.0.13.2-1_armhf.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_armhf.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 132308 bytes: control archive=2145 bytes.
- 1082 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: armhf
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 430
- Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:46 ./usr/bin/
--rwxr-xr-x root/root 26380 2012-05-15 12:46 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 17960 2012-05-15 12:46 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 5380 2012-05-15 12:45 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 26328 2012-05-15 12:46 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 17956 2012-05-15 12:46 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 22076 2012-05-15 12:46 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 17960 2012-05-15 12:46 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 5896 2012-05-15 12:45 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 17952 2012-05-15 12:46 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 13925 2012-05-15 12:45 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 17952 2012-05-15 12:46 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 17956 2012-05-15 12:46 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 6069 2012-05-15 12:45 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 17956 2012-05-15 12:46 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 42820 2012-05-15 12:46 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 17960 2012-05-15 12:46 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 17952 2012-05-15 12:46 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 2764 2012-05-15 12:45 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 13944 2012-05-15 12:46 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 17948 2012-05-15 12:46 ./usr/bin/fasta_nucleotide_changer
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:45 ./usr/share/man/man1/
--rw-r--r-- root/root 922 2012-05-15 12:45 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 613 2012-05-15 12:45 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:45 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:45 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:45 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:45 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:45 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:45 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:45 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:45 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:45 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 2212 2012-05-15 12:45 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:45 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:45 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:45 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:45 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:45 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:45 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:45 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:45 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
-lrwxrwxrwx root/root 0 2012-05-15 12:45 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-armhf-sbuild-07305c47-3ce7-4b9d-a057-b2842f3d58aa/build/buildd-fastx-toolkit_0.0.13.2-1-armhf-6jyr66
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: armhf
-Build-Space: 8684
-Build-Time: 186
-Distribution: sid
-Install-Time: 87
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 428
-Source-Version: 0.0.13.2-1
-Space: 8684
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1246
-Build needed 00:07:08, 8684k disc space
-Signature with key '3CE79B5E' requested:
-
diff --git a/dsc b/dsc
deleted file mode 100644
index 2f058bc..0000000
--- a/dsc
+++ /dev/null
@@ -1,45 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
-
-Format: 3.0 (quilt)
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: any
-Version: 0.0.13.2-1
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
-Dm-Upload-Allowed: yes
-Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
-Standards-Version: 3.9.3
-Vcs-Browser: http://git.debian.org/?p=debian-med/fastx-toolkit.git
-Vcs-Git: git://git.debian.org/debian-med/fastx-toolkit.git
-Build-Depends: debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
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diff --git a/fastx-toolkit_0.0.13.2-2.dsc b/fastx-toolkit_0.0.13.2-2.dsc
new file mode 100644
index 0000000..8e3bb6d
--- /dev/null
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+Binary: fastx-toolkit
+Architecture: any
+Version: 0.0.13.2-2
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
+Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/fastx-toolkit.git
+Vcs-Git: git://anonscm.debian.org/debian-med/fastx-toolkit.git
+Build-Depends: debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
+Package-List:
+ fastx-toolkit deb science optional
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diff --git a/fastx-toolkit_0.0.13.2-2_amd64.build b/fastx-toolkit_0.0.13.2-2_amd64.build
new file mode 100644
index 0000000..27199ad
--- /dev/null
+++ b/fastx-toolkit_0.0.13.2-2_amd64.build
@@ -0,0 +1,1236 @@
+I: Using pkgname logfile
+I: Current time: Thu Oct 24 08:15:11 CEST 2013
+I: pbuilder-time-stamp: 1382595311
+I: Obtaining the cached apt archive contents
+I: Installing the build-deps
+W: no hooks of type D found -- ignoring
+ -> Attempting to satisfy build-dependencies
+ -> Creating pbuilder-satisfydepends-dummy package
+Package: pbuilder-satisfydepends-dummy
+Version: 0.invalid.0
+Architecture: amd64
+Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
+Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
+ This package was created automatically by pbuilder to satisfy the
+ build-dependencies of the package being currently built.
+Depends: debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
+dpkg-deb: building package `pbuilder-satisfydepends-dummy' in `/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
+Selecting previously unselected package pbuilder-satisfydepends-dummy.
+(Reading database ... 12146 files and directories currently installed.)
+Unpacking pbuilder-satisfydepends-dummy (from .../pbuilder-satisfydepends-dummy.deb) ...
+dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
+ pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however:
+ Package debhelper is not installed.
+ pbuilder-satisfydepends-dummy depends on autotools-dev; however:
+ Package autotools-dev is not installed.
+ pbuilder-satisfydepends-dummy depends on pkg-config; however:
+ Package pkg-config is not installed.
+ pbuilder-satisfydepends-dummy depends on libgtextutils-dev; however:
+ Package libgtextutils-dev is not installed.
+ pbuilder-satisfydepends-dummy depends on help2man; however:
+ Package help2man is not installed.
+ pbuilder-satisfydepends-dummy depends on libgd-graph-perl; however:
+ Package libgd-graph-perl is not installed.
+ pbuilder-satisfydepends-dummy depends on libperlio-gzip-perl; however:
+ Package libperlio-gzip-perl is not installed.
+
+Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+Initializing package states...
+Writing extended state information...
+The following NEW packages will be installed:
+ autotools-dev{a} bsdmainutils{a} debhelper{a} file{a}
+ fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a}
+ groff-base{a} help2man{a} intltool-debian{a} libasprintf0c2{a}
+ libcroco3{a} libexpat1{a} libffi6{a} libfontconfig1{a} libfreetype6{a}
+ libgd-gd2-perl{a} libgd-graph-perl{a} libgd-text-perl{a} libgd3{a}
+ libglib2.0-0{a} libgtextutils-dev{a} libgtextutils0{a} libjbig0
+ libjpeg8{a} libmagic1{a} libperlio-gzip-perl{a} libpipeline1{a}
+ libpng12-0{a} libpopt0{a} libtiff4{a} libunistring0{a} libvpx1{a}
+ libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a}
+ libxpm4{a} man-db{a} pkg-config{a} po-debconf{a} ttf-dejavu-core{a}
+ ucf{a}
+0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded.
+Need to get 676 kB/13.2 MB of archives. After unpacking 38.4 MB will be used.
+Writing extended state information...
+Get: 1 http://ftp.de.debian.org/debian/ sid/main libgtextutils0 amd64 0.6.2-1 [21.1 kB]
+Get: 2 http://ftp.de.debian.org/debian/ sid/main libgtextutils-dev amd64 0.6.2-1 [25.9 kB]
+Get: 3 http://ftp.de.debian.org/debian/ sid/main libperlio-gzip-perl amd64 0.18-1+b3 [19.0 kB]
+Get: 4 http://ftp.de.debian.org/debian/ sid/main libgd-gd2-perl amd64 1:2.46-3.1+b1 [175 kB]
+Get: 5 http://ftp.de.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
+Get: 6 http://ftp.de.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
+Fetched 676 kB in 2min 1s (5560 B/s)
+debconf: delaying package configuration, since apt-utils is not installed
+Selecting previously unselected package libpipeline1:amd64.
+(Reading database ... 12146 files and directories currently installed.)
+Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.4-1_amd64.deb) ...
+Selecting previously unselected package libpopt0:amd64.
+Unpacking libpopt0:amd64 (from .../libpopt0_1.16-7_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.22.2-3_amd64.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.5_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.5-2_amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:amd64.
+Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.3.1-1_amd64.deb) ...
+Selecting previously unselected package libmagic1:amd64.
+Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.14-2_amd64.deb) ...
+Selecting previously unselected package libxml2:amd64.
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+Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ...
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+Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.36.4-1_amd64.deb) ...
+Selecting previously unselected package libcroco3:amd64.
+Unpacking libcroco3:amd64 (from .../libcroco3_0.6.8-2_amd64.deb) ...
+Selecting previously unselected package libexpat1:amd64.
+Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-4_amd64.deb) ...
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+Unpacking libxpm4:amd64 (from .../libxpm4_1%3a3.5.10-1_amd64.deb) ...
+Selecting previously unselected package libgd3:amd64.
+Unpacking libgd3:amd64 (from .../libgd3_2.1.0-3_amd64.deb) ...
+Selecting previously unselected package libunistring0:amd64.
+Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package file.
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+Selecting previously unselected package autotools-dev.
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+Selecting previously unselected package po-debconf.
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+Selecting previously unselected package debhelper.
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+Selecting previously unselected package help2man.
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+Selecting previously unselected package libgtextutils0.
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+Selecting previously unselected package libgtextutils-dev.
+Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_amd64.deb) ...
+Selecting previously unselected package libperlio-gzip-perl.
+Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1+b3_amd64.deb) ...
+Selecting previously unselected package pkg-config.
+Unpacking pkg-config (from .../pkg-config_0.26-1_amd64.deb) ...
+Selecting previously unselected package libgd-gd2-perl.
+Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3.1+b1_amd64.deb) ...
+Selecting previously unselected package libgd-text-perl.
+Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ...
+Selecting previously unselected package libgd-graph-perl.
+Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
+Setting up libpipeline1:amd64 (1.2.4-1) ...
+Setting up libpopt0:amd64 (1.16-7) ...
+Setting up groff-base (1.22.2-3) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.5-2) ...
+Building database of manual pages ...
+Setting up libasprintf0c2:amd64 (0.18.3.1-1) ...
+Setting up libmagic1:amd64 (1:5.14-2) ...
+Setting up libxml2:amd64 (2.9.1+dfsg1-3) ...
+Setting up libffi6:amd64 (3.0.13-4) ...
+Setting up libglib2.0-0:amd64 (2.36.4-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:amd64 (0.6.8-2) ...
+Setting up libexpat1:amd64 (2.1.0-4) ...
+Setting up libfreetype6:amd64 (2.4.9-1.1) ...
+Setting up ucf (3.0027+nmu1) ...
+Setting up fonts-dejavu-core (2.33+svn2514-3) ...
+Setting up ttf-dejavu-core (2.33+svn2514-3) ...
+Setting up fontconfig-config (2.11.0-1) ...
+Setting up libfontconfig1:amd64 (2.11.0-1) ...
+Setting up libjpeg8:amd64 (8d-1) ...
+Setting up libpng12-0:amd64 (1.2.49-5) ...
+Setting up libjbig0:amd64 (2.0-2) ...
+Setting up libtiff4:amd64 (3.9.7-2) ...
+Setting up libvpx1:amd64 (1.2.0-2) ...
+Setting up libxau6:amd64 (1:1.0.8-1) ...
+Setting up libxdmcp6:amd64 (1:1.1.1-1) ...
+Setting up libxcb1:amd64 (1.9.1-3) ...
+Setting up libx11-data (2:1.6.2-1) ...
+Setting up libx11-6:amd64 (2:1.6.2-1) ...
+Setting up libxpm4:amd64 (1:3.5.10-1) ...
+Setting up libgd3:amd64 (2.1.0-3) ...
+Setting up libunistring0:amd64 (0.9.3-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.1-1) ...
+Setting up autotools-dev (20130810.1) ...
+Setting up gettext (0.18.3.1-1) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20130921) ...
+Setting up help2man (1.43.3) ...
+Setting up libgtextutils0 (0.6.2-1) ...
+Setting up libgtextutils-dev (0.6.2-1) ...
+Setting up libperlio-gzip-perl (0.18-1+b3) ...
+Setting up pkg-config (0.26-1) ...
+Setting up libgd-gd2-perl (1:2.46-3.1+b1) ...
+Setting up libgd-text-perl (0.86-8) ...
+Setting up libgd-graph-perl (1.44-6) ...
+Processing triggers for libc-bin ...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+Reading extended state information...
+Initializing package states...
+Writing extended state information...
+ -> Finished parsing the build-deps
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following NEW packages will be installed:
+ fakeroot
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/95.1 kB of archives.
+After this operation, 351 kB of additional disk space will be used.
+Selecting previously unselected package fakeroot.
+(Reading database ... 14362 files and directories currently installed.)
+Unpacking fakeroot (from .../fakeroot_1.20-1_amd64.deb) ...
+Processing triggers for man-db ...
+Setting up fakeroot (1.20-1) ...
+update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
+I: Copying back the cached apt archive contents
+I: new cache content libperlio-gzip-perl_0.18-1+b3_amd64.deb added
+I: new cache content libgd-text-perl_0.86-8_all.deb added
+I: new cache content libgd-gd2-perl_1%3a2.46-3.1+b1_amd64.deb added
+I: new cache content libgd-graph-perl_1.44-6_all.deb added
+I: new cache content libgtextutils0_0.6.2-1_amd64.deb added
+I: new cache content libgtextutils-dev_0.6.2-1_amd64.deb added
+I: Copying source file
+I: copying [/home/tillea/debian-maintain/alioth/debian-med_git/build-area/fastx-toolkit_0.0.13.2-2.dsc]
+I: copying [/home/tillea/debian-maintain/alioth/debian-med_git/build-area/fastx-toolkit_0.0.13.2.orig.tar.bz2]
+I: copying [/home/tillea/debian-maintain/alioth/debian-med_git/build-area/fastx-toolkit_0.0.13.2-2.debian.tar.gz]
+I: Extracting source
+dpkg-source: warning: extracting unsigned source package (fastx-toolkit_0.0.13.2-2.dsc)
+dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
+dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
+dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-2.debian.tar.gz
+I: Building the package
+W: no hooks of type A found -- ignoring
+I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -i\.git -I.git -i\.git -I.git -rfakeroot
+dpkg-buildpackage: source package fastx-toolkit
+dpkg-buildpackage: source version 0.0.13.2-2
+dpkg-buildpackage: source distribution unstable
+dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
+ dpkg-source -i.git -I.git -i.git -I.git --before-build fastx-toolkit-0.0.13.2
+dpkg-buildpackage: host architecture amd64
+ fakeroot debian/rules clean
+dh clean --with autotools_dev
+ dh_testdir
+ dh_auto_clean
+ dh_autotools-dev_restoreconfig
+ for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done
+ for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done
+ find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete
+ dh_clean
+ rm -f debian/fastx-toolkit.substvars
+ rm -f debian/fastx-toolkit.*.debhelper
+ rm -rf debian/fastx-toolkit/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} + \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
+ rm -f *-stamp
+ dpkg-source -i.git -I.git -i.git -I.git -b fastx-toolkit-0.0.13.2
+dpkg-source: info: using source format `3.0 (quilt)'
+dpkg-source: info: building fastx-toolkit using existing ./fastx-toolkit_0.0.13.2.orig.tar.bz2
+dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.2-2.debian.tar.gz
+dpkg-source: info: building fastx-toolkit in fastx-toolkit_0.0.13.2-2.dsc
+ debian/rules build
+dh build --with autotools_dev
+ dh_testdir
+ dh_autotools-dev_updateconfig
+ for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done
+ for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done
+ dh_auto_configure
+ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
+configure: WARNING: unrecognized options: --disable-maintainer-mode
+checking for a BSD-compatible install... /usr/bin/install -c
+checking whether build environment is sane... yes
+checking for a thread-safe mkdir -p... /bin/mkdir -p
+checking for gawk... no
+checking for mawk... mawk
+checking whether make sets $(MAKE)... yes
+checking for gcc... gcc
+checking whether the C compiler works... yes
+checking for C compiler default output file name... a.out
+checking for suffix of executables...
+checking whether we are cross compiling... no
+checking for suffix of object files... o
+checking whether we are using the GNU C compiler... yes
+checking whether gcc accepts -g... yes
+checking for gcc option to accept ISO C89... none needed
+checking for style of include used by make... GNU
+checking dependency style of gcc... none
+checking for g++... g++
+checking whether we are using the GNU C++ compiler... yes
+checking whether g++ accepts -g... yes
+checking dependency style of g++... none
+checking build system type... x86_64-pc-linux-gnu
+checking host system type... x86_64-pc-linux-gnu
+checking for a sed that does not truncate output... /bin/sed
+checking for grep that handles long lines and -e... /bin/grep
+checking for egrep... /bin/grep -E
+checking for fgrep... /bin/grep -F
+checking for ld used by gcc... /usr/bin/ld
+checking if the linker (/usr/bin/ld) is GNU ld... yes
+checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
+checking the name lister (/usr/bin/nm -B) interface... BSD nm
+checking whether ln -s works... yes
+checking the maximum length of command line arguments... 3458764513820540925
+checking whether the shell understands some XSI constructs... yes
+checking whether the shell understands "+="... yes
+checking for /usr/bin/ld option to reload object files... -r
+checking for objdump... objdump
+checking how to recognize dependent libraries... pass_all
+checking for ar... ar
+checking for strip... strip
+checking for ranlib... ranlib
+checking command to parse /usr/bin/nm -B output from gcc object... ok
+checking how to run the C preprocessor... gcc -E
+checking for ANSI C header files... yes
+checking for sys/types.h... yes
+checking for sys/stat.h... yes
+checking for stdlib.h... yes
+checking for string.h... yes
+checking for memory.h... yes
+checking for strings.h... yes
+checking for inttypes.h... yes
+checking for stdint.h... yes
+checking for unistd.h... yes
+checking for dlfcn.h... yes
+checking whether we are using the GNU C++ compiler... (cached) yes
+checking whether g++ accepts -g... (cached) yes
+checking dependency style of g++... (cached) none
+checking how to run the C++ preprocessor... g++ -E
+checking for objdir... .libs
+checking if gcc supports -fno-rtti -fno-exceptions... no
+checking for gcc option to produce PIC... -fPIC -DPIC
+checking if gcc PIC flag -fPIC -DPIC works... yes
+checking if gcc static flag -static works... yes
+checking if gcc supports -c -o file.o... yes
+checking if gcc supports -c -o file.o... (cached) yes
+checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
+checking whether -lc should be explicitly linked in... no
+checking dynamic linker characteristics... GNU/Linux ld.so
+checking how to hardcode library paths into programs... immediate
+checking whether stripping libraries is possible... yes
+checking if libtool supports shared libraries... yes
+checking whether to build shared libraries... yes
+checking whether to build static libraries... yes
+checking for ld used by g++... /usr/bin/ld -m elf_x86_64
+checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
+checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
+checking for g++ option to produce PIC... -fPIC -DPIC
+checking if g++ PIC flag -fPIC -DPIC works... yes
+checking if g++ static flag -static works... yes
+checking if g++ supports -c -o file.o... yes
+checking if g++ supports -c -o file.o... (cached) yes
+checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
+checking dynamic linker characteristics... GNU/Linux ld.so
+checking how to hardcode library paths into programs... immediate
+checking for long long int... yes
+checking for ISO C++ TR1 include files... yes
+checking for pkg-config... /usr/bin/pkg-config
+checking pkg-config is at least version 0.9.0... yes
+checking for GTEXTUTILS... yes
+configure: creating ./config.status
+config.status: creating Makefile
+config.status: creating doc/Makefile
+config.status: creating m4/Makefile
+config.status: creating src/Makefile
+config.status: creating src/libfastx/Makefile
+config.status: creating src/fastx_clipper/Makefile
+config.status: creating src/fastq_to_fasta/Makefile
+config.status: creating src/fastx_quality_stats/Makefile
+config.status: creating src/fastq_quality_converter/Makefile
+config.status: creating src/fastx_trimmer/Makefile
+config.status: creating src/fastq_quality_filter/Makefile
+config.status: creating src/fastq_quality_trimmer/Makefile
+config.status: creating src/fastx_artifacts_filter/Makefile
+config.status: creating src/fastx_reverse_complement/Makefile
+config.status: creating src/fastx_collapser/Makefile
+config.status: creating src/fastx_uncollapser/Makefile
+config.status: creating src/seqalign_test/Makefile
+config.status: creating src/fasta_formatter/Makefile
+config.status: creating src/fasta_nucleotide_changer/Makefile
+config.status: creating src/fastx_renamer/Makefile
+config.status: creating src/fastq_masker/Makefile
+config.status: creating galaxy/Makefile
+config.status: creating galaxy/tools/Makefile
+config.status: creating galaxy/tools/fastx_toolkit/Makefile
+config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile
+config.status: creating galaxy/test-data/Makefile
+config.status: creating galaxy/static/Makefile
+config.status: creating galaxy/static/fastx_icons/Makefile
+config.status: creating galaxy/tool-data/Makefile
+config.status: creating scripts/Makefile
+config.status: creating build_scripts/Makefile
+config.status: creating config.h
+config.status: executing depfiles commands
+config.status: executing libtool commands
+configure: WARNING: unrecognized options: --disable-maintainer-mode
+ dh_auto_build
+ make -j1
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make all-recursive
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+Making all in m4
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+make[3]: Nothing to be done for `all'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+Making all in src
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making all in libfastx
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
+gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
+gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
+g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
+rm -f libfastx.a
+ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
+ranlib libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+Making all in fastx_clipper
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+Making all in fastx_trimmer
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+Making all in fastx_quality_stats
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+Making all in fastq_quality_converter
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+Making all in fastq_to_fasta
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+Making all in fastq_quality_filter
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+Making all in fastq_quality_trimmer
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+Making all in fastx_artifacts_filter
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+Making all in fastx_reverse_complement
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+Making all in fastx_collapser
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+Making all in fastx_uncollapser
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+Making all in seqalign_test
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+Making all in fasta_formatter
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
+/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
+libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+Making all in fasta_nucleotide_changer
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+Making all in fastx_renamer
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+Making all in fastq_masker
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
+/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
+libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[4]: Nothing to be done for `all-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making all in doc
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+make[3]: Nothing to be done for `all'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+Making all in galaxy
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making all in tools
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making all in fastx_toolkit
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+make[5]: Nothing to be done for `all'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+Making all in cshl_custom_fastx_toolkit
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Nothing to be done for `all'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[5]: Nothing to be done for `all-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making all in test-data
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+make[4]: Nothing to be done for `all'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+Making all in static
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making all in fastx_icons
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[5]: Nothing to be done for `all'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[5]: Nothing to be done for `all-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making all in tool-data
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[4]: Nothing to be done for `all'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[4]: Nothing to be done for `all-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making all in scripts
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+make[3]: Nothing to be done for `all'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+Making all in build_scripts
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[3]: Nothing to be done for `all'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ dh_auto_test
+ make -j1 check
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+Making check in m4
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+make[2]: Nothing to be done for `check'.
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+Making check in src
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making check in libfastx
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+Making check in fastx_clipper
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+Making check in fastx_trimmer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+Making check in fastx_quality_stats
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+Making check in fastq_quality_converter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+Making check in fastq_to_fasta
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+Making check in fastq_quality_filter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+Making check in fastq_quality_trimmer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+Making check in fastx_artifacts_filter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+Making check in fastx_reverse_complement
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+Making check in fastx_collapser
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+Making check in fastx_uncollapser
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+Making check in seqalign_test
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+Making check in fasta_formatter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+Making check in fasta_nucleotide_changer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+Making check in fastx_renamer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+Making check in fastq_masker
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[3]: Nothing to be done for `check-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making check in doc
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+make[2]: Nothing to be done for `check'.
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+Making check in galaxy
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making check in tools
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making check in fastx_toolkit
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+make[4]: Nothing to be done for `check'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+Making check in cshl_custom_fastx_toolkit
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Nothing to be done for `check'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[4]: Nothing to be done for `check-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making check in test-data
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+Making check in static
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making check in fastx_icons
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[4]: Nothing to be done for `check'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[4]: Nothing to be done for `check-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making check in tool-data
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[3]: Nothing to be done for `check'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[3]: Nothing to be done for `check-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making check in scripts
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+make[2]: Nothing to be done for `check'.
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+Making check in build_scripts
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[2]: Nothing to be done for `check'.
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ fakeroot debian/rules binary
+dh binary --with autotools_dev
+ dh_testroot
+ dh_prep
+ rm -f debian/fastx-toolkit.substvars
+ rm -f debian/fastx-toolkit.*.debhelper
+ rm -rf debian/fastx-toolkit/
+ dh_auto_install
+ install -d debian/fastx-toolkit
+ make -j1 install DESTDIR=/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+Making install in m4
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+make[3]: Nothing to be done for `install-exec-am'.
+test -z "/usr/share/aclocal" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
+ /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/m4'
+Making install in src
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making install in libfastx
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/libfastx'
+Making install in fastx_clipper
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_clipper /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_clipper'
+Making install in fastx_trimmer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_trimmer /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
+Making install in fastx_quality_stats
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_quality_stats /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
+Making install in fastq_quality_converter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastq_quality_converter /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
+Making install in fastq_to_fasta
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastq_to_fasta /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
+Making install in fastq_quality_filter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastq_quality_filter /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
+Making install in fastq_quality_trimmer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastq_quality_trimmer /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
+Making install in fastx_artifacts_filter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_artifacts_filter /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
+Making install in fastx_reverse_complement
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_reverse_complement /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
+Making install in fastx_collapser
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_collapser /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_collapser'
+Making install in fastx_uncollapser
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_uncollapser /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
+Making install in seqalign_test
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/seqalign_test'
+Making install in fasta_formatter
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fasta_formatter /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_formatter'
+Making install in fasta_nucleotide_changer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fasta_nucleotide_changer /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
+Making install in fastx_renamer
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastx_renamer /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastx_renamer'
+Making install in fastq_masker
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+libtool: install: /usr/bin/install -c fastq_masker /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src/fastq_masker'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/src'
+Making install in doc
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+make[3]: Nothing to be done for `install-exec-am'.
+make[3]: Nothing to be done for `install-data-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/doc'
+Making install in galaxy
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making install in tools
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making install in fastx_toolkit
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+make[5]: Nothing to be done for `install-exec-am'.
+make[5]: Nothing to be done for `install-data-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
+Making install in cshl_custom_fastx_toolkit
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[5]: Nothing to be done for `install-exec-am'.
+make[5]: Nothing to be done for `install-data-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[5]: Nothing to be done for `install-exec-am'.
+make[5]: Nothing to be done for `install-data-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tools'
+Making install in test-data
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/test-data'
+Making install in static
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making install in fastx_icons
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[5]: Nothing to be done for `install-exec-am'.
+make[5]: Nothing to be done for `install-data-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[5]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[5]: Nothing to be done for `install-exec-am'.
+make[5]: Nothing to be done for `install-data-am'.
+make[5]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/static'
+Making install in tool-data
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy/tool-data'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[4]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[4]: Nothing to be done for `install-exec-am'.
+make[4]: Nothing to be done for `install-data-am'.
+make[4]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/galaxy'
+Making install in scripts
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+test -z "/usr/bin" || /bin/mkdir -p "/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
+ /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
+make[3]: Nothing to be done for `install-data-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/scripts'
+Making install in build_scripts
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[3]: Nothing to be done for `install-exec-am'.
+make[3]: Nothing to be done for `install-data-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2/build_scripts'
+make[2]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[3]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[3]: Nothing to be done for `install-exec-am'.
+make[3]: Nothing to be done for `install-data-am'.
+make[3]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[2]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ debian/rules override_dh_install
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+dh_install
+rm --recursive /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ dh_installdocs
+ install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
+ cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
+ cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
+ cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
+ chown -R 0:0 debian/fastx-toolkit/usr/share/doc
+ chmod -R go=rX debian/fastx-toolkit/usr/share/doc
+ chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
+ debian/rules override_dh_installchangelogs
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+dh_installchangelogs -k NEWS
+ install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
+ install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
+ ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ debian/rules override_dh_installman
+make[1]: Entering directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+mkdir -p /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
+# The name strings are obtained from
+# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
+# and
+# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='changes the width of sequences line in a FASTA file' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='Convets FASTA sequences from/to RNA/DNA' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name="Masks nucleotides with 'N' (or other character) based on quality" \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
+# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='Converts sequences based on quality' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='Filters sequences based on quality' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
+dh_installman debian/fastq_quality_trimmer.1
+ install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
+ man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
+ chmod 644 fastq_quality_filter.1.new
+ mv -f fastq_quality_filter.1.new fastq_quality_filter.1
+ man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
+ chmod 644 fasta_nucleotide_changer.1.new
+ mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
+ man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
+ chmod 644 fastq_quality_converter.1.new
+ mv -f fastq_quality_converter.1.new fastq_quality_converter.1
+ man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
+ chmod 644 fastq_quality_trimmer.1.new
+ mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
+ man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
+ chmod 644 fasta_formatter.1.new
+ mv -f fasta_formatter.1.new fasta_formatter.1
+ man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
+ chmod 644 fastq_masker.1.new
+ mv -f fastq_masker.1.new fastq_masker.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='Convert FASTQ files to FASTA files' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTQ/A Artifacts Filter' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Clipper' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Collapser' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTX Statistics' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Renamer' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTQ/A Reverse Complement' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Trimmer' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Uncollapser' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
+# Perl scripts add the full path to usage advise which needs to be removed
+# The script fasta_clipping_histogram.pl does not feature a '-h' option
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
+ --name='Create a Linker Clipping Information Histogram' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
+ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
+ > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTX Barcode Splitter' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
+ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
+ > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='Solexa-Quality BoxPlot plotter' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Nucleotide Distribution Plotter' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
+help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
+ --name='FASTA/Q Nucleotide Distribution Plotter' \
+ /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
+for man in `find /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
+find: `*.1': No such file or directory
+/bin/sh: 1: cannot create /tmp/buildd/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
+make[1]: Leaving directory `/tmp/buildd/fastx-toolkit-0.0.13.2'
+ dh_perl
+ (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
+ mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
+ dh_link
+ rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
+ ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
+ dh_compress
+ cd debian/fastx-toolkit
+ chmod a-x usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq [...]
+ gzip -9nf usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq [...]
+ cd '/tmp/buildd/fastx-toolkit-0.0.13.2'
+ rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
+ ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
+ dh_fixperms
+ find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
+ find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
+ dh_strip
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
+ dh_makeshlibs
+ rm -f debian/fastx-toolkit/DEBIAN/shlibs
+ dh_shlibdeps
+ install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
+ dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-t [...]
+ dh_installdeb
+ dh_gencontrol
+ echo misc:Depends= >> debian/fastx-toolkit.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
+ chmod 644 debian/fastx-toolkit/DEBIAN/control
+ chown 0:0 debian/fastx-toolkit/DEBIAN/control
+ dh_md5sums
+ (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
+ chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
+ dh_builddeb
+ dpkg-deb --build debian/fastx-toolkit ..
+dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-2_amd64.deb'.
+ dpkg-genchanges >../fastx-toolkit_0.0.13.2-2_amd64.changes
+dpkg-genchanges: not including original source code in upload
+ dpkg-source -i.git -I.git -i.git -I.git --after-build fastx-toolkit-0.0.13.2
+dpkg-buildpackage: binary and diff upload (original source NOT included)
+W: no hooks of type B found -- ignoring
+I: Copying back the cached apt archive contents
+I: unmounting dev/pts filesystem
+I: unmounting run/shm filesystem
+I: unmounting proc filesystem
+I: Current time: Thu Oct 24 08:18:25 CEST 2013
+I: pbuilder-time-stamp: 1382595505
+uncollapser
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
+ strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
+ dh_makeshlibs
+ rm -f debian/fastx-toolkit/DEBIAN/shlibs
+ dh_shlibdeps
+ install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
+ dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-t [...]
+ dh_installdeb
+ dh_gencontrol
+ echo misc:Depends= >> debian/fastx-toolkit.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
+ chmod 644 debian/fastx-toolkit/DEBIAN/control
+ chown 0:0 debian/fastx-toolkit/DEBIAN/control
+ dh_md5sums
+ (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
+ chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
+ dh_builddeb
+ dpkg-deb --build debian/fastx-toolkit ..
+dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-2_amd64.deb'.
+ dpkg-genchanges >../fastx-toolkit_0.0.13.2-2_amd64.changes
+dpkg-genchanges: not including original source code in upload
+ dpkg-source -i.git -I.git -i.git -I.git --after-build fastx-toolkit-0.0.13.2
+dpkg-buildpackage: binary and diff upload (original source NOT included)
+W: no hooks of type B found -- ignoring
+I: Copying back the cached apt archive contents
+I: unmounting dev/pts filesystem
+I: unmounting run/shm filesystem
+I: unmounting proc filesystem
+I: Current time: Thu Oct 24 08:18:25 CEST 2013
+I: pbuilder-time-stamp: 1382595505
+ -> Cleaning COW directory
+ forking: rm -rf /var/cache/pbuilder/build//cow.32125
+ signfile /home/tillea/debian-maintain/alioth/debian-med_git/build-area/fastx-toolkit_0.0.13.2-2.dsc Andreas Tille <tille at debian.org>
+
+ signfile /home/tillea/debian-maintain/alioth/debian-med_git/build-area/fastx-toolkit_0.0.13.2-2_amd64.changes Andreas Tille <tille at debian.org>
+
+Successfully signed dsc and changes files
diff --git a/fastx-toolkit_0.0.13.2-2_amd64.changes b/fastx-toolkit_0.0.13.2-2_amd64.changes
new file mode 100644
index 0000000..0aabc62
--- /dev/null
+++ b/fastx-toolkit_0.0.13.2-2_amd64.changes
@@ -0,0 +1,45 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+Format: 1.8
+Date: Wed, 10 Jul 2013 09:31:59 +0900
+Source: fastx-toolkit
+Binary: fastx-toolkit
+Architecture: source amd64
+Version: 0.0.13.2-2
+Distribution: unstable
+Urgency: low
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
+Description:
+ fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
+Closes: 727377
+Changes:
+ fastx-toolkit (0.0.13.2-2) unstable; urgency=low
+ .
+ 20c23bd debian/control normalised with config-model-edit.
+ e23d327 Conforms with Policy 3.9.4.
+ bd520ae Removed obsolete DM-Upload-Allowed field.
+ ef94fe2 Added upstream metadata.
+ 5303f09 Use normalised VCS URLs.
+ 381489a Refresh autotools files via dh. (Closes: #727377)
+Checksums-Sha1:
+ edb1cbd2e62687050a1e934e689b079bdc99f62c 1500 fastx-toolkit_0.0.13.2-2.dsc
+ 16866a54ccef96087c4e8404df0f0440132b791f 17018 fastx-toolkit_0.0.13.2-2.debian.tar.gz
+ 798c450823e07314f646c8ddba9e8e059c2afdbf 88188 fastx-toolkit_0.0.13.2-2_amd64.deb
+Checksums-Sha256:
+ 64d628c16d5ccad0abd532b53b750eea0bdb60624c317e06fc74465928105313 1500 fastx-toolkit_0.0.13.2-2.dsc
+ c0bc6d4f56d360df845efa50f0f964a16c8862b29b19fe23063fd6deec7fea3b 17018 fastx-toolkit_0.0.13.2-2.debian.tar.gz
+ 23b969c56149d566be0424a9a3901e3a258309c4dd4bdaebe2713dca2e1c9cbe 88188 fastx-toolkit_0.0.13.2-2_amd64.deb
+Files:
+ 1060bd28252fb8d1d612a00bfba211d2 1500 science optional fastx-toolkit_0.0.13.2-2.dsc
+ 3aa6aa75120d08e0582d30fbbe702b1d 17018 science optional fastx-toolkit_0.0.13.2-2.debian.tar.gz
+ 27cc1d6466988d5bcb7ca66199b096c7 88188 science optional fastx-toolkit_0.0.13.2-2_amd64.deb
+
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.4.15 (GNU/Linux)
+
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+xz0AoKgTjdeNFv9xSpPR/Pju41jIOD1U
+=pui9
+-----END PGP SIGNATURE-----
diff --git a/fastx-toolkit_0.0.13.2-2_amd64.ftp-master.upload b/fastx-toolkit_0.0.13.2-2_amd64.ftp-master.upload
new file mode 100644
index 0000000..ccf9db9
--- /dev/null
+++ b/fastx-toolkit_0.0.13.2-2_amd64.ftp-master.upload
@@ -0,0 +1,11 @@
+2013-10-24 08:19:46,517 - dput[18033]: uploader.invoke_dput - Uploading fastx-toolkit using ftp to ftp-master (host: ftp.upload.debian.org; directory: /pub/UploadQueue/)
+2013-10-24 08:19:46,523 - dput[18033]: hook.run_hook - running allowed-distribution: check whether a local profile permits uploads to the target distribution
+2013-10-24 08:19:46,527 - dput[18033]: hook.run_hook - running protected-distribution: warn before uploading to distributions where a special policy applies
+2013-10-24 08:19:46,528 - dput[18033]: hook.run_hook - running checksum: verify checksums before uploading
+2013-10-24 08:19:46,530 - dput[18033]: hook.run_hook - running suite-mismatch: check the target distribution for common errors
+2013-10-24 08:19:46,532 - dput[18033]: hook.run_hook - running check-debs: makes sure the upload contains a binary package
+2013-10-24 08:19:46,533 - dput[18033]: hook.run_hook - running gpg: check GnuPG signatures before the upload
+2013-10-24 08:19:48,800 - dput[18033]: uploader.invoke_dput - Uploading fastx-toolkit_0.0.13.2-2.dsc
+2013-10-24 08:19:49,444 - dput[18033]: uploader.invoke_dput - Uploading fastx-toolkit_0.0.13.2-2.debian.tar.gz
+2013-10-24 08:19:50,554 - dput[18033]: uploader.invoke_dput - Uploading fastx-toolkit_0.0.13.2-2_amd64.deb
+2013-10-24 08:19:51,832 - dput[18033]: uploader.invoke_dput - Uploading fastx-toolkit_0.0.13.2-2_amd64.changes
diff --git a/hurd-i386.log b/hurd-i386.log
deleted file mode 100644
index 6d63ffb..0000000
--- a/hurd-i386.log
+++ /dev/null
@@ -1,637 +0,0 @@
-From buildd at bach.debian.net Wed May 16 07:49:22 2012
-Return-path: <buildd at bach.debian.net>
-Received: from callisto.debian.net ([80.87.129.151])
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at bach.debian.net>)
- id 1SUYz4-0004sQ-Jp
- for logs at buildd.debian.org; Wed, 16 May 2012 07:49:22 +0000
-Received: from bach.debian.net ([10.3.0.1])
- by callisto.debian.net with esmtp (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1SUYz2-00011L-Hm; Wed, 16 May 2012 08:49:20 +0100
-Received: from buildd by bach.debian.net with local (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1SUYz3-0005R0-Cv; Wed, 16 May 2012 07:49:21 +0000
-Message-Id: <E1SUYz3-0005R0-Cv at bach.debian.net>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.78; A2.07; B3.08; Q3.08)
-Date: Wed, 16 May 2012 07:49:21 +0000
-From: Build Daemon <buildd at bach.debian.net>
-To: samuel.thibault at ens-lyon.org,mbanck at gmx.net,logs at buildd.debian.org
-Subject: Log for attempted build of fastx-toolkit_0.0.13.2-1 on hurd-i386
- (dist=sid)
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on bach.debian.net
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (hurd-i386) 16 mai 2012 07:40 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: hurd-i386
-Ign file: ./ InRelease
-Ign file: ./ Release.gpg
-Ign file: ./ Release
-Ign file: ./ Translation-en
-Ign file: ./ Translation-fr
-Hit http://ftp.fr.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org Release
-Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.fr.debian.org sid/main TranslationIndex
-Hit http://ftp.fr.debian.org sid/contrib Translation-en
-Hit http://ftp.fr.debian.org sid/main Translation-en
-Hit http://ftp.fr.debian.org sid/main Translation-fr
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://ftp.fr.debian.org sid/contrib Translation-fr
-Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org Translation-fr
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://ftp.fr.debian.org/debian/ sid/main fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://ftp.fr.debian.org/debian/ sid/main fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://ftp.fr.debian.org/debian/ sid/main fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (540 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
-bash: already installed (4.2-2)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.06)
-hurd: already installed (20120408-3)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-10)
-sed: already installed (4.2.1-9)
-sysvinit-utils: already installed (2.88dsf-13.10)
-sysvinit: already installed (2.88dsf-13.10)
-tar: already installed (1.25-2)
-bsdutils: already installed (1:2.16.2-0)
-util-linux: already installed (2.16.2-0)
-libc0.3-dev: already installed (2.13-31)
-gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-hurd-dev: already installed (20120408-3)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: already installed (0.26-1)
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-The following extra packages will be installed:
- file fontconfig-config gettext gettext-base html2text intltool-debian
- libasprintf0c2 libcroco3 libexpat1 libfontconfig1 libfreetype6
- libgd-gd2-perl libgd-text-perl libgd2-xpm libgettextpo0 libgtextutils0
- libjpeg8 libmagic1 libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxpm4 po-debconf ttf-dejavu-core ucf
-Suggested packages:
- dh-make gettext-doc ttf-dustin libgd-tools libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev debhelper file fontconfig-config gettext gettext-base help2man
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libfontconfig1
- libfreetype6 libgd-gd2-perl libgd-graph-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libgtextutils-dev libgtextutils0 libjpeg8 libmagic1
- libperlio-gzip-perl libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxpm4 po-debconf ttf-dejavu-core ucf
-0 upgraded, 34 newly installed, 0 to remove and 89 not upgraded.
-Need to get 1027 kB/9349 kB of archives.
-After this operation, 25.7 MB of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
- libasprintf0c2 libmagic1 libcroco3 libexpat1 libfreetype6 ucf
- ttf-dejavu-core fontconfig-config libfontconfig1 libjpeg8 libxau6 libxdmcp6
- libxcb1 libx11-data libx11-6 libxpm4 libgd2-xpm libunistring0 libgettextpo0
- file gettext-base autotools-dev html2text gettext intltool-debian po-debconf
- debhelper help2man libgtextutils0 libgtextutils-dev libperlio-gzip-perl
- libgd-gd2-perl libgd-text-perl libgd-graph-perl
-Authentication warning overridden.
-Get:1 http://ftp.fr.debian.org/debian/ sid/main libgd2-xpm hurd-i386 2.0.36~rc1~dfsg-6.1 [231 kB]
-Get:2 http://ftp.fr.debian.org/debian/ sid/main help2man hurd-i386 1.40.9+b1 [95.3 kB]
-Get:3 http://ftp.fr.debian.org/debian/ sid/main libgtextutils0 hurd-i386 0.6.2-1 [21.1 kB]
-Get:4 http://ftp.fr.debian.org/debian/ sid/main libgtextutils-dev hurd-i386 0.6.2-1 [26.1 kB]
-Get:5 http://ftp.fr.debian.org/debian/ sid/main libperlio-gzip-perl hurd-i386 0.18-1+b3 [19.0 kB]
-Get:6 http://ftp.fr.debian.org/debian/ sid/main libgd-gd2-perl hurd-i386 1:2.46-3+b2 [199 kB]
-Get:7 http://ftp.fr.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:8 http://ftp.fr.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
-
Extracting templates from packages: 88%
Extracting templates from packages: 100%
-Preconfiguring packages ...
-Fetched 1027 kB in 1s (571 kB/s)
-Selecting previously unselected package libasprintf0c2.
-(Reading database ... 17464 files and directories currently installed.)
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_hurd-i386.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.9-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ...
-Moving old data out of the way
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.9.0-5+b1_hurd-i386.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8d-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.7-1_hurd-i386.deb) ...
-Selecting previously unselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libxcb1.
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-Removing negative dependencies:
-Reading package lists...
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- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.22-6+b1 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.4_4.4.7-1 gcc-4.5_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.7_4.7.0-8 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20120408-3 libc0.3-dev_2.13-31 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8
-Package versions: adduser_3.113 apt_0.8.15.10 apt-utils_0.9.0 autotools-dev_20120210.1 base-files_6.4 base-passwd_3.5.22 bash_4.2-2 bash-completion_1:1.99-3 binutils_2.22-6+b1 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5+b1 bzip2_1.0.6-1+b1 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.7.0-6 cpp-4.4_4.4.7-1 cpp-4.5_4.5.3-12 cpp-4.6_4.6.3-5 cpp-4.7_4.7.0-8 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_9.20120513 debian-archi [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
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-Check disc space
-────────────────
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-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture hurd-i386
- /usr/bin/fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- ./configure --build=i486-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/i386-gnu --libexecdir=\${prefix}/lib/i386-gnu --disable-maintainer-mode --disable-dependency-tracking
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... gawk
-checking whether make sets $(MAKE)... yes
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-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... i486-pc-gnu
-checking host system type... i486-pc-gnu
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-checking if the linker (/usr/bin/ld) is GNU ld... yes
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-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... -1
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
-checking for strip... strip
-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
-checking for sys/types.h... yes
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-checking whether we are using the GNU C++ compiler... (cached) yes
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-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
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-checking dynamic linker characteristics... gnu ld.so
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-checking pkg-config is at least version 0.9.0... yes
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-configure: creating ./config.status
-config.status: creating Makefile
-config.status: creating doc/Makefile
-config.status: creating m4/Makefile
-config.status: creating src/Makefile
-config.status: creating src/libfastx/Makefile
-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
-config.status: creating src/fastx_trimmer/Makefile
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-config.status: creating src/fastq_quality_trimmer/Makefile
-config.status: creating src/fastx_artifacts_filter/Makefile
-config.status: creating src/fastx_reverse_complement/Makefile
-config.status: creating src/fastx_collapser/Makefile
-config.status: creating src/fastx_uncollapser/Makefile
-config.status: creating src/seqalign_test/Makefile
-config.status: creating src/fasta_formatter/Makefile
-config.status: creating src/fasta_nucleotide_changer/Makefile
-config.status: creating src/fastx_renamer/Makefile
-config.status: creating src/fastq_masker/Makefile
-config.status: creating galaxy/Makefile
-config.status: creating galaxy/tools/Makefile
-config.status: creating galaxy/tools/fastx_toolkit/Makefile
-config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile
-config.status: creating galaxy/test-data/Makefile
-config.status: creating galaxy/static/Makefile
-config.status: creating galaxy/static/fastx_icons/Makefile
-config.status: creating galaxy/tool-data/Makefile
-config.status: creating scripts/Makefile
-config.status: creating build_scripts/Makefile
-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-In file included from fastx.c:29:0:
-fastx.h:106:23: error: 'PATH_MAX' undeclared here (not in a function)
-make[4]: *** [fastx.o] Error 1
-make[3]: *** [all-recursive] Error 1
-make[2]: *** [all-recursive] Error 1
-make[1]: *** [all] Error 2
-dh_auto_build: make -j1 returned exit code 2
-make: *** [build-arch] Error 2
-dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ/fastx-toolkit-0.0.13.2'
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120516-0748
-FAILED [dpkg-buildpackage died]
-────────────────────────────────────────────────────────────────────────────────
-Purging /home/buildd/build/chroot-sid/build/buildd-fastx-toolkit_0.0.13.2-1-hurd-i386-sGU1uZ
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
-Use 'apt-get autoremove' to remove them.
-The following packages will be REMOVED:
- autotools-dev* debhelper* file* fontconfig-config* gettext* gettext-base*
- help2man* html2text* intltool-debian* libasprintf0c2* libcroco3* libexpat1*
- libfontconfig1* libfreetype6* libgd-gd2-perl* libgd-graph-perl*
- libgd-text-perl* libgd2-xpm* libgettextpo0* libgtextutils-dev*
- libgtextutils0* libjpeg8* libmagic1* libperlio-gzip-perl* libunistring0*
- libx11-6* libx11-data* libxau6* libxcb1* libxdmcp6* libxpm4* po-debconf*
- ttf-dejavu-core* ucf*
-0 upgraded, 0 newly installed, 34 to remove and 89 not upgraded.
-After this operation, 25.7 MB disk space will be freed.
-(Reading database ... 18985 files and directories currently installed.)
-Removing autotools-dev ...
-Removing debhelper ...
-Removing file ...
-Removing libgd-graph-perl ...
-Removing libgd-text-perl ...
-Removing libgd-gd2-perl ...
-Removing libgd2-xpm ...
-Purging configuration files for libgd2-xpm ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing help2man ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2 ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
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-Purging configuration files for libgtextutils0 ...
-Removing libjpeg8 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libperlio-gzip-perl ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxpm4 ...
-Purging configuration files for libxpm4 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Processing triggers for man-db ...
-Processing triggers for install-info ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: hurd-i386
-Build-Space: 4064
-Build-Time: 140
-Distribution: sid
-Fail-Stage: build
-Install-Time: 210
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 442
-Source-Version: 0.0.13.2-1
-Space: 4064
-Status: attempted
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120516-0748
-Build needed 00:07:22, 4064k disc space
diff --git a/i386.log b/i386.log
deleted file mode 100644
index 222940f..0000000
--- a/i386.log
+++ /dev/null
@@ -1,1554 +0,0 @@
-From buildd at murphy.debian.org Tue May 15 13:10:38 2012
-Return-path: <buildd at murphy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
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- for logs at buildd.debian.org; Tue, 15 May 2012 13:10:36 +0000
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- id 1SUHWM-0008TK-E6; Tue, 15 May 2012 13:10:34 +0000
-Message-Id: <E1SUHWM-0008TK-E6 at murphy.debian.org>
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-Date: Tue, 15 May 2012 13:10:34 +0000
-From: buildd on murphy <buildd at murphy.debian.org>
-To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on i386
- (dist=sid)
-Key-Id: 2B54027C
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (i386) 15 May 2012 13:09 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: i386
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.us.debian.org sid/main Translation-en/DiffIndex
-Get:2 http://incoming.debian.org Release [1601 B]
-Get:3 http://incoming.debian.org Sources [64.6 kB]
-Get:4 http://incoming.debian.org Packages [791 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 858 kB in 7s (109 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (329 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-10)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
-gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 liblocale-gettext-perl
- libmagic1 libpcre3 libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf
- ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libpcre3 libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0
- libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db
- pkg-config po-debconf ttf-dejavu-core
-0 upgraded, 45 newly installed, 0 to remove and 6 not upgraded.
-Need to get 932 kB/15.3 MB of archives.
-After this operation, 38.5 MB of additional disk space will be used.
-Get:1 http://ftp.us.debian.org/debian/ sid/main libgd2-xpm i386 2.0.36~rc1~dfsg-6.1 [232 kB]
-Get:2 http://ftp.us.debian.org/debian/ sid/main libgtextutils0 i386 0.6.2-1 [21.0 kB]
-Get:3 http://ftp.us.debian.org/debian/ sid/main libgtextutils-dev i386 0.6.2-1 [25.9 kB]
-Get:4 http://ftp.us.debian.org/debian/ sid/main libperlio-gzip-perl i386 0.18-1+b2 [19.0 kB]
-Get:5 http://ftp.us.debian.org/debian/ sid/main libgd-gd2-perl i386 1:2.46-3+b1 [199 kB]
-Get:6 http://ftp.us.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:7 http://ftp.us.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 932 kB in 2s (325 kB/s)
-Selecting previously unselected package libpipeline1:i386.
-(Reading database ... 10990 files and directories currently installed.)
-Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.1-1_i386.deb) ...
-Selecting previously unselected package libpopt0:i386.
-Unpacking libpopt0:i386 (from .../libpopt0_1.16-5_i386.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_i386.deb) ...
-Selecting previously unselected package libasprintf0c2:i386.
-Unpacking libasprintf0c2:i386 (from .../libasprintf0c2_0.18.1.1-7_i386.deb) ...
-Selecting previously unselected package libmagic1:i386.
-Unpacking libmagic1:i386 (from .../libmagic1_5.11-1_i386.deb) ...
-Selecting previously unselected package libpcre3:i386.
-Unpacking libpcre3:i386 (from .../libpcre3_1%3a8.30-5_i386.deb) ...
-Selecting previously unselected package libxml2:i386.
-Unpacking libxml2:i386 (from .../libxml2_2.7.8.dfsg-9_i386.deb) ...
-Selecting previously unselected package libffi5:i386.
-Unpacking libffi5:i386 (from .../libffi5_3.0.10-3_i386.deb) ...
-Selecting previously unselected package libglib2.0-0:i386.
-Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.32.2-1_i386.deb) ...
-Selecting previously unselected package libcroco3:i386.
-Unpacking libcroco3:i386 (from .../libcroco3_0.6.5-1_i386.deb) ...
-Selecting previously unselected package libexpat1:i386.
-Unpacking libexpat1:i386 (from .../libexpat1_2.1.0-1_i386.deb) ...
-Selecting previously unselected package libfreetype6:i386.
-Unpacking libfreetype6:i386 (from .../libfreetype6_2.4.9-1_i386.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:i386.
-Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.9.0-5_i386.deb) ...
-Selecting previously unselected package libjpeg8:i386.
-Unpacking libjpeg8:i386 (from .../libjpeg8_8d-1_i386.deb) ...
-Selecting previously unselected package libpng12-0:i386.
-Unpacking libpng12-0:i386 (from .../libpng12-0_1.2.49-1_i386.deb) ...
-Selecting previously unselected package libxau6:i386.
-Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.7-1_i386.deb) ...
-Selecting previously unselected package libxdmcp6:i386.
-Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ...
-Selecting previously unselected package libxcb1:i386.
-Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-1_i386.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:i386.
-Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.4.99.901-2_i386.deb) ...
-Selecting previously unselected package libxpm4:i386.
-Unpacking libxpm4:i386 (from .../libxpm4_1%3a3.5.10-1_i386.deb) ...
-Selecting previously unselected package libgd2-xpm:i386.
-Unpacking libgd2-xpm:i386 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_i386.deb) ...
-Selecting previously unselected package libunistring0:i386.
-Unpacking libunistring0:i386 (from .../libunistring0_0.9.3-5_i386.deb) ...
-Selecting previously unselected package libgettextpo0:i386.
-Unpacking libgettextpo0:i386 (from .../libgettextpo0_0.18.1.1-7_i386.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_i386.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_i386.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_i386.deb) ...
-Selecting previously unselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
-Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_i386.deb) ...
-Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
-Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
-Selecting previously unselected package help2man.
-Unpacking help2man (from .../help2man_1.40.9_i386.deb) ...
-Selecting previously unselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_i386.deb) ...
-Selecting previously unselected package libgtextutils-dev.
-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_i386.deb) ...
-Selecting previously unselected package libperlio-gzip-perl.
-Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1+b2_i386.deb) ...
-Selecting previously unselected package pkg-config.
-Unpacking pkg-config (from .../pkg-config_0.26-1_i386.deb) ...
-Selecting previously unselected package libgd-gd2-perl.
-Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_i386.deb) ...
-Selecting previously unselected package libgd-text-perl.
-Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ...
-Selecting previously unselected package libgd-graph-perl.
-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
-Setting up libpipeline1:i386 (1.2.1-1) ...
-Setting up libpopt0:i386 (1.16-5) ...
-Setting up liblocale-gettext-perl (1.05-7+b1) ...
-Setting up libasprintf0c2:i386 (0.18.1.1-7) ...
-Setting up libmagic1:i386 (5.11-1) ...
-Setting up libpcre3:i386 (1:8.30-5) ...
-Setting up libxml2:i386 (2.7.8.dfsg-9) ...
-Setting up libffi5:i386 (3.0.10-3) ...
-Setting up libglib2.0-0:i386 (2.32.2-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3:i386 (0.6.5-1) ...
-Setting up libexpat1:i386 (2.1.0-1) ...
-Setting up libfreetype6:i386 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1:i386 (2.9.0-5) ...
-Setting up libjpeg8:i386 (8d-1) ...
-Setting up libpng12-0:i386 (1.2.49-1) ...
-Setting up libxau6:i386 (1:1.0.7-1) ...
-Setting up libxdmcp6:i386 (1:1.1.1-1) ...
-Setting up libxcb1:i386 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.99.901-2) ...
-Setting up libx11-6:i386 (2:1.4.99.901-2) ...
-Setting up libxpm4:i386 (1:3.5.10-1) ...
-Setting up libgd2-xpm:i386 (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0:i386 (0.9.3-5) ...
-Setting up libgettextpo0:i386 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up libperlio-gzip-perl (0.18-1+b2) ...
-Setting up pkg-config (0.26-1) ...
-Setting up libgd-gd2-perl (1:2.46-3+b1) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.7_4.7.0-8 libc6-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig- [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture i386
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=i486-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... gawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... gcc
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
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-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making all in seqalign_test
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making all in fasta_formatter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
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-Making all in doc
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-Making all in galaxy
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-Making all in tools
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-Making all in fastx_toolkit
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-Making all in cshl_custom_fastx_toolkit
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-Making all in test-data
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-Making all in static
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-Making all in fastx_icons
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-Making all in tool-data
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-Making all in scripts
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-Making all in build_scripts
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- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-Making check in m4
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-Making check in src
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-Making check in libfastx
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-Making check in fastx_clipper
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-Making check in fastx_trimmer
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-Making check in fastx_quality_stats
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-Making check in fastq_quality_converter
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-Making check in fastq_to_fasta
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-Making check in fastq_quality_filter
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-Making check in fastq_quality_trimmer
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-Making check in fastx_artifacts_filter
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-Making check in fastx_reverse_complement
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-Making check in fastx_collapser
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-Making check in fastx_uncollapser
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-Making check in seqalign_test
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-Making check in fasta_formatter
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-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/shar [...]
- gzip -9nf usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/shar [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-to [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_i386.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1310
-
-fastx-toolkit_0.0.13.2-1_i386.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: i386
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 793656f375f6729d9dba2629a9ca9a73767ce5c3 121322 fastx-toolkit_0.0.13.2-1_i386.deb
-Checksums-Sha256:
- e0d43a194155a93c09913aa0a17daca4d94b667dbded59e0db9ffb2c119fd18e 121322 fastx-toolkit_0.0.13.2-1_i386.deb
-Files:
- 2a35ba0d16104f3872d166384676280d 121322 science optional fastx-toolkit_0.0.13.2-1_i386.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_i386.deb
-─────────────────────────────────
-
- new debian package, version 2.0.
- size 121322 bytes: control archive= 2142 bytes.
- 1077 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: i386
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 397
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/bin/
--rwxr-xr-x root/root 13784 2012-05-15 13:10 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 13784 2012-05-15 13:10 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 2764 2012-05-15 13:10 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 13780 2012-05-15 13:10 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5896 2012-05-15 13:10 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 5380 2012-05-15 13:10 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 17904 2012-05-15 13:10 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 13776 2012-05-15 13:10 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 46908 2012-05-15 13:10 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 17880 2012-05-15 13:10 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 6069 2012-05-15 13:10 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 17876 2012-05-15 13:10 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 13784 2012-05-15 13:10 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 13780 2012-05-15 13:10 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 13872 2012-05-15 13:10 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 13925 2012-05-15 13:10 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 22148 2012-05-15 13:10 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 26304 2012-05-15 13:10 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 13776 2012-05-15 13:10 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 17880 2012-05-15 13:10 ./usr/bin/fastx_trimmer
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/man/man1/
--rw-r--r-- root/root 518 2012-05-15 13:10 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 505 2012-05-15 13:10 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 688 2012-05-15 13:10 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 558 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 2210 2012-05-15 13:10 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 922 2012-05-15 13:10 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 645 2012-05-15 13:10 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 599 2012-05-15 13:10 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 661 2012-05-15 13:10 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 904 2012-05-15 13:10 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 583 2012-05-15 13:10 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 659 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 468 2012-05-15 13:10 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 728 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 590 2012-05-15 13:10 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 638 2012-05-15 13:10 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 613 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 589 2012-05-15 13:10 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 557 2012-05-15 13:10 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 929 2012-05-15 13:10 ./usr/share/man/man1/fastx_quality_stats.1.gz
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
-lrwxrwxrwx root/root 0 2012-05-15 13:10 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-i386-sbuild-e214f438-e0e5-4d21-98a3-64439acec65b/build/buildd-fastx-toolkit_0.0.13.2-1-i386-SFNNtn
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- autotools-dev* bsdmainutils* debhelper* file* fontconfig-config* gettext*
- gettext-base* groff-base* help2man* html2text* intltool-debian*
- libasprintf0c2* libcroco3* libexpat1* libffi5* libfontconfig1* libfreetype6*
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- po-debconf* ttf-dejavu-core*
-0 upgraded, 0 newly installed, 45 to remove and 6 not upgraded.
-After this operation, 38.5 MB disk space will be freed.
-(Reading database ... 13143 files and directories currently installed.)
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-Purging configuration files for libcroco3:i386 ...
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-Purging configuration files for libexpat1:i386 ...
-Removing pkg-config ...
-Removing libglib2.0-0:i386 ...
-Purging configuration files for libglib2.0-0:i386 ...
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-Purging configuration files for libpipeline1:i386 ...
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-Purging configuration files for libpopt0:i386 ...
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-Purging configuration files for libunistring0:i386 ...
-Removing libxpm4:i386 ...
-Purging configuration files for libxpm4:i386 ...
-Removing libx11-6:i386 ...
-Purging configuration files for libx11-6:i386 ...
-Removing libx11-data ...
-Removing libxcb1:i386 ...
-Purging configuration files for libxcb1:i386 ...
-Removing libxau6:i386 ...
-Purging configuration files for libxau6:i386 ...
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-Purging configuration files for libxdmcp6:i386 ...
-Removing libxml2:i386 ...
-Purging configuration files for libxml2:i386 ...
-Removing ttf-dejavu-core ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: i386
-Build-Space: 8856
-Build-Time: 38
-Distribution: sid
-Install-Time: 18
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 73
-Source-Version: 0.0.13.2-1
-Space: 8856
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1310
-Build needed 00:01:13, 8856k disc space
-Signature with key '2B54027C' requested:
diff --git a/ia64.log b/ia64.log
deleted file mode 100644
index e98a7e1..0000000
--- a/ia64.log
+++ /dev/null
@@ -1,1504 +0,0 @@
-From buildd at mundy.debian.org Tue May 15 13:01:52 2012
-Return-path: <buildd at mundy.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
- id 1SUHNw-0001fG-I6
- for logs at buildd.debian.org; Tue, 15 May 2012 13:01:52 +0000
-Received: from mundy.debian.org ([192.25.206.62])
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- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
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-Received: from buildd by mundy.debian.org with local (Exim 4.72)
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- id 1SUHNs-00026s-94; Tue, 15 May 2012 13:01:48 +0000
-Date: Tue, 15 May 2012 13:01:48 +0000
-Message-Id: <E1SUHNs-00026s-94 at mundy.debian.org>
-From: buildd on mundy <buildd at mundy.debian.org>
-To: dannf at master.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on ia64
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mundy.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (ia64) 15 May 2012 12:57 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
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-Ign http://incoming.debian.org InRelease
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-Ign http://incoming.debian.org unstable/contrib TranslationIndex
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-Ign http://incoming.debian.org Translation-en
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-┌──────────────────────────────────────────────────────────────────────────────┐
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-
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-Check APT
-─────────
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-Checking available source versions...
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-──────────────────────────────
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-Reading package lists...
-Building dependency tree...
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-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
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-──────────
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
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-┌──────────────────────────────────────────────────────────────────────────────┐
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-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
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-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 liblocale-gettext-perl
- libmagic1 libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf
- ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-0 upgraded, 44 newly installed, 0 to remove and 65 not upgraded.
-Need to get 17.4 MB of archives.
-After this operation, 49.8 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.1-1 [48.2 kB]
-Get:2 http://spohr.debian.org/debian/ unstable/main libpopt0 ia64 1.16-5 [68.4 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main liblocale-gettext-perl ia64 1.05-7+b1 [23.6 kB]
-Get:4 http://spohr.debian.org/debian/ unstable/main libasprintf0c2 ia64 0.18.1.1-7 [27.2 kB]
-Get:5 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.11-1 [275 kB]
-Get:6 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-9 [1179 kB]
-Get:7 http://spohr.debian.org/debian/ unstable/main libffi5 ia64 3.0.10-3 [35.5 kB]
-Get:8 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.32.2-1 [2433 kB]
-Get:9 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.5-1 [175 kB]
-Get:10 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.1.0-1 [215 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.9-1 [627 kB]
-Get:12 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:13 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:14 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.9.0-5 [336 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8d-1 [244 kB]
-Get:16 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.49-1 [222 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.7-1 [20.1 kB]
-Get:18 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.1-1 [29.1 kB]
-Get:19 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.8.1-1 [56.7 kB]
-Get:20 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:21 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.99.901-2 [1077 kB]
-Get:22 http://spohr.debian.org/debian/ unstable/main libxpm4 ia64 1:3.5.10-1 [66.1 kB]
-Get:23 http://spohr.debian.org/debian/ unstable/main libgd2-xpm ia64 2.0.36~rc1~dfsg-6.1 [263 kB]
-Get:24 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
-Get:25 http://spohr.debian.org/debian/ unstable/main libgettextpo0 ia64 0.18.1.1-7 [205 kB]
-Get:26 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.1 [240 kB]
-Get:27 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-7 [1376 kB]
-Get:28 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.1-2 [1156 kB]
-Get:29 http://spohr.debian.org/debian/ unstable/main file ia64 5.11-1 [55.3 kB]
-Get:30 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-7 [172 kB]
-Get:31 http://spohr.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:32 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:33 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-7 [2264 kB]
-Get:34 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:35 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:36 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:37 http://spohr.debian.org/debian/ unstable/main help2man ia64 1.40.9 [96.5 kB]
-Get:38 http://spohr.debian.org/debian/ unstable/main libgtextutils0 ia64 0.6.2-1 [22.9 kB]
-Get:39 http://spohr.debian.org/debian/ unstable/main libgtextutils-dev ia64 0.6.2-1 [25.6 kB]
-Get:40 http://spohr.debian.org/debian/ unstable/main libperlio-gzip-perl ia64 0.18-1+b2 [22.2 kB]
-Get:41 http://spohr.debian.org/debian/ unstable/main pkg-config ia64 0.26-1 [67.2 kB]
-Get:42 http://spohr.debian.org/debian/ unstable/main libgd-gd2-perl ia64 1:2.46-3+b1 [220 kB]
-Get:43 http://spohr.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:44 http://spohr.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 17.4 MB in 1s (10.0 MB/s)
-Selecting previously unselected package libpipeline1:ia64.
-(Reading database ... 10760 files and directories currently installed.)
-Unpacking libpipeline1:ia64 (from .../libpipeline1_1.2.1-1_ia64.deb) ...
-Selecting previously unselected package libpopt0:ia64.
-Unpacking libpopt0:ia64 (from .../libpopt0_1.16-5_ia64.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_ia64.deb) ...
-Selecting previously unselected package libasprintf0c2:ia64.
-Unpacking libasprintf0c2:ia64 (from .../libasprintf0c2_0.18.1.1-7_ia64.deb) ...
-Selecting previously unselected package libmagic1:ia64.
-Unpacking libmagic1:ia64 (from .../libmagic1_5.11-1_ia64.deb) ...
-Selecting previously unselected package libxml2:ia64.
-Unpacking libxml2:ia64 (from .../libxml2_2.7.8.dfsg-9_ia64.deb) ...
-Selecting previously unselected package libffi5:ia64.
-Unpacking libffi5:ia64 (from .../libffi5_3.0.10-3_ia64.deb) ...
-Selecting previously unselected package libglib2.0-0:ia64.
-Unpacking libglib2.0-0:ia64 (from .../libglib2.0-0_2.32.2-1_ia64.deb) ...
-Selecting previously unselected package libcroco3:ia64.
-Unpacking libcroco3:ia64 (from .../libcroco3_0.6.5-1_ia64.deb) ...
-Selecting previously unselected package libexpat1:ia64.
-Unpacking libexpat1:ia64 (from .../libexpat1_2.1.0-1_ia64.deb) ...
-Selecting previously unselected package libfreetype6:ia64.
-Unpacking libfreetype6:ia64 (from .../libfreetype6_2.4.9-1_ia64.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:ia64.
-Unpacking libfontconfig1:ia64 (from .../libfontconfig1_2.9.0-5_ia64.deb) ...
-Selecting previously unselected package libjpeg8:ia64.
-Unpacking libjpeg8:ia64 (from .../libjpeg8_8d-1_ia64.deb) ...
-Selecting previously unselected package libpng12-0:ia64.
-Unpacking libpng12-0:ia64 (from .../libpng12-0_1.2.49-1_ia64.deb) ...
-Selecting previously unselected package libxau6:ia64.
-Unpacking libxau6:ia64 (from .../libxau6_1%3a1.0.7-1_ia64.deb) ...
-Selecting previously unselected package libxdmcp6:ia64.
-Unpacking libxdmcp6:ia64 (from .../libxdmcp6_1%3a1.1.1-1_ia64.deb) ...
-Selecting previously unselected package libxcb1:ia64.
-Unpacking libxcb1:ia64 (from .../libxcb1_1.8.1-1_ia64.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:ia64.
-Unpacking libx11-6:ia64 (from .../libx11-6_2%3a1.4.99.901-2_ia64.deb) ...
-Selecting previously unselected package libxpm4:ia64.
-Unpacking libxpm4:ia64 (from .../libxpm4_1%3a3.5.10-1_ia64.deb) ...
-Selecting previously unselected package libgd2-xpm:ia64.
-Unpacking libgd2-xpm:ia64 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_ia64.deb) ...
-Selecting previously unselected package libunistring0:ia64.
-Unpacking libunistring0:ia64 (from .../libunistring0_0.9.3-5_ia64.deb) ...
-Selecting previously unselected package libgettextpo0:ia64.
-Unpacking libgettextpo0:ia64 (from .../libgettextpo0_0.18.1.1-7_ia64.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_ia64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_ia64.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_ia64.deb) ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_ia64.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_ia64.deb) ...
-Selecting previously unselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
-Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_ia64.deb) ...
-Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
-Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
-Selecting previously unselected package help2man.
-Unpacking help2man (from .../help2man_1.40.9_ia64.deb) ...
-Selecting previously unselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_ia64.deb) ...
-Selecting previously unselected package libgtextutils-dev.
-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_ia64.deb) ...
-Selecting previously unselected package libperlio-gzip-perl.
-Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1+b2_ia64.deb) ...
-Selecting previously unselected package pkg-config.
-Unpacking pkg-config (from .../pkg-config_0.26-1_ia64.deb) ...
-Selecting previously unselected package libgd-gd2-perl.
-Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_ia64.deb) ...
-Selecting previously unselected package libgd-text-perl.
-Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ...
-Selecting previously unselected package libgd-graph-perl.
-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
-Setting up libpipeline1:ia64 (1.2.1-1) ...
-Setting up libpopt0:ia64 (1.16-5) ...
-Setting up liblocale-gettext-perl (1.05-7+b1) ...
-Setting up libasprintf0c2:ia64 (0.18.1.1-7) ...
-Setting up libmagic1:ia64 (5.11-1) ...
-Setting up libxml2:ia64 (2.7.8.dfsg-9) ...
-Setting up libffi5:ia64 (3.0.10-3) ...
-Setting up libglib2.0-0:ia64 (2.32.2-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3:ia64 (0.6.5-1) ...
-Setting up libexpat1:ia64 (2.1.0-1) ...
-Setting up libfreetype6:ia64 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1:ia64 (2.9.0-5) ...
-Setting up libjpeg8:ia64 (8d-1) ...
-Setting up libpng12-0:ia64 (1.2.49-1) ...
-Setting up libxau6:ia64 (1:1.0.7-1) ...
-Setting up libxdmcp6:ia64 (1:1.1.1-1) ...
-Setting up libxcb1:ia64 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.99.901-2) ...
-Setting up libx11-6:ia64 (2:1.4.99.901-2) ...
-Setting up libxpm4:ia64 (1:3.5.10-1) ...
-Setting up libgd2-xpm:ia64 (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0:ia64 (0.9.3-5) ...
-Setting up libgettextpo0:ia64 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up libperlio-gzip-perl (0.18-1+b2) ...
-Setting up pkg-config (0.26-1) ...
-Setting up libgd-gd2-perl (1:2.46-3+b1) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 65 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6.1-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.12-1
-Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 f [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
-
-Check disc space
-────────────────
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-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture ia64
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=ia64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/ia64-linux-gnu --libexecdir=\${prefix}/lib/ia64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... no
-checking for mawk... mawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... gcc
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... ia64-unknown-linux-gnu
-checking host system type... ia64-unknown-linux-gnu
-checking for a sed that does not truncate output... /bin/sed
-checking for grep that handles long lines and -e... /bin/grep
-checking for egrep... /bin/grep -E
-checking for fgrep... /bin/grep -F
-checking for ld used by gcc... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... 3458764513820540925
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
-checking for strip... strip
-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
-checking for sys/types.h... yes
-checking for sys/stat.h... yes
-checking for stdlib.h... yes
-checking for string.h... yes
-checking for memory.h... yes
-checking for strings.h... yes
-checking for inttypes.h... yes
-checking for stdint.h... yes
-checking for unistd.h... yes
-checking for dlfcn.h... yes
-checking whether we are using the GNU C++ compiler... (cached) yes
-checking whether g++ accepts -g... (cached) yes
-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
-checking for gcc option to produce PIC... -fPIC -DPIC
-checking if gcc PIC flag -fPIC -DPIC works... yes
-checking if gcc static flag -static works... yes
-checking if gcc supports -c -o file.o... yes
-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
-checking if libtool supports shared libraries... yes
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-Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
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-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
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-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
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-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
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-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
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-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
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-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
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-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
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-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
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-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/m4'
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-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/libfastx'
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-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
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-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
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-Making check in fastx_quality_stats
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-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
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-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
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-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
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-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
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-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
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-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
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-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
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-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
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-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1 [...]
- gzip -9nf usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1 [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-too [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_ia64.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1301
-
-fastx-toolkit_0.0.13.2-1_ia64.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: ia64
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: ia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- e7718b8396fcc247ff630e6fce7f886f037cfdcb 251234 fastx-toolkit_0.0.13.2-1_ia64.deb
-Checksums-Sha256:
- 32cec0acbf17542a990db5e892da87dbb3c2e9f86e123fb4bd9d870d1c1c644b 251234 fastx-toolkit_0.0.13.2-1_ia64.deb
-Files:
- 6cc3ae66357c50b2697aba62b4add226 251234 science optional fastx-toolkit_0.0.13.2-1_ia64.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_ia64.deb
-─────────────────────────────────
-
- new debian package, version 2.0.
- size 251234 bytes: control archive= 2151 bytes.
- 1093 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: ia64
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 794
- Depends: libc6.1 (>= 2.3.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libunwind7, libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/share/man/man1/
--rw-r--r-- root/root 599 2012-05-15 13:01 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 929 2012-05-15 13:01 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 558 2012-05-15 13:01 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 505 2012-05-15 13:01 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 13:01 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 904 2012-05-15 13:01 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 583 2012-05-15 13:01 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 659 2012-05-15 13:01 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 688 2012-05-15 13:01 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 661 2012-05-15 13:01 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 589 2012-05-15 13:01 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 557 2012-05-15 13:01 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 613 2012-05-15 13:01 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 638 2012-05-15 13:01 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 2211 2012-05-15 13:01 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 468 2012-05-15 13:01 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 922 2012-05-15 13:01 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 645 2012-05-15 13:01 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 728 2012-05-15 13:01 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 518 2012-05-15 13:01 ./usr/share/man/man1/fastx_reverse_complement.1.gz
-drwxr-xr-x root/root 0 2012-05-15 13:01 ./usr/bin/
--rwxr-xr-x root/root 65592 2012-05-15 13:01 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 38528 2012-05-15 13:01 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 35672 2012-05-15 13:01 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 37376 2012-05-15 13:01 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 36952 2012-05-15 13:01 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 5896 2012-05-15 13:01 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 6069 2012-05-15 13:01 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 38136 2012-05-15 13:01 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 24640 2012-05-15 13:01 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 112232 2012-05-15 13:01 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 37328 2012-05-15 13:01 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 5380 2012-05-15 13:01 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 36512 2012-05-15 13:01 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 56680 2012-05-15 13:01 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 38512 2012-05-15 13:01 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 51096 2012-05-15 13:01 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 37128 2012-05-15 13:01 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 36976 2012-05-15 13:01 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 2764 2012-05-15 13:01 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 13925 2012-05-15 13:01 ./usr/bin/fastx_barcode_splitter.pl
-lrwxrwxrwx root/root 0 2012-05-15 13:01 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-1312634b-deab-4904-aced-b896fcb07d0d/build/buildd-fastx-toolkit_0.0.13.2-1-ia64-HO3GAD
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: ia64
-Build-Space: 11644
-Build-Time: 75
-Distribution: sid
-Install-Time: 106
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 245
-Source-Version: 0.0.13.2-1
-Space: 11644
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1301
-Build needed 00:04:05, 11644k disc space
-Signature with key 'A2605B34' requested:
-
diff --git a/info b/info
deleted file mode 100644
index 771b53a..0000000
--- a/info
+++ /dev/null
@@ -1,13 +0,0 @@
-s390x~1337085423~sid~successful
-powerpc~1337085495~sid~successful
-s390~1337085516~sid~successful
-sparc~1337085775~sid~successful
-armhf~1337085995~sid~successful
-mips~1337086830~sid~successful
-ia64~1337086913~sid~successful
-i386~1337087438~sid~successful
-kfreebsd-amd64~1337087527~sid~successful
-kfreebsd-i386~1337088068~sid~successful
-mipsel~1337090898~sid~successful
-armel~1337092036~sid~successful
-hurd-i386~1337154563~sid~failed
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
deleted file mode 100644
index 71e22a8..0000000
--- a/kfreebsd-amd64.log
+++ /dev/null
@@ -1,1584 +0,0 @@
-From buildd at fasch.debian.org Tue May 15 13:11:58 2012
-Return-path: <buildd at fasch.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1SUHXi-000319-44
- for logs at buildd.debian.org; Tue, 15 May 2012 13:11:58 +0000
-Received: from fasch.debian.org ([194.177.211.201])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1SUHXg-0004eU-WB; Tue, 15 May 2012 13:11:57 +0000
-Received: from buildd by fasch.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fasch.debian.org>)
- id 1SUHXg-000IAG-8c; Tue, 15 May 2012 13:11:56 +0000
-Message-Id: <E1SUHXg-000IAG-8c at fasch.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 13:11:56 +0000
-From: buildd on fasch <buildd at fasch.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on
- kfreebsd-amd64 (dist=sid)
-Key-Id: 94C0145B
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (kfreebsd-amd64) 15 May 2012 13:06 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: kfreebsd-amd64
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.gr.debian.org sid/main Translation-en/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Translation-en/DiffIndex
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/non-free Translation-en/DiffIndex
-Get:2 http://incoming.debian.org Release [1601 B]
-Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Get:3 http://incoming.debian.org Sources [64.1 kB]
-Get:4 http://incoming.debian.org Packages [791 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 858 kB in 6s (131 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 2s (224 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: missing
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies: build-essential
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 libstdc++6-4.7-dev
-Suggested packages:
- cpp-doc gcc-4.7-locales g++-multilib g++-4.7-multilib gcc-4.7-doc
- libstdc++6-4.7-dbg gcc-multilib manpages-dev autoconf automake1.9 libtool
- flex bison gdb gcc-doc gcc-4.7-multilib libmudflap0-4.7-dev libgcc1-dbg
- libgomp1-dbg libitm1-dbg libquadmath0-dbg libmudflap0-dbg libstdc++6-4.7-doc
-The following NEW packages will be installed:
- build-essential cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 libstdc++6-4.7-dev
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 8 newly installed, 0 to remove and 1 not upgraded.
-Need to get 0 B/21.0 MB of archives.
-After this operation, 55.1 MB of additional disk space will be used.
-Selecting previously unselected package cpp-4.7.
-(Reading database ... 10730 files and directories currently installed.)
-Unpacking cpp-4.7 (from .../cpp-4.7_4.7.0-8_kfreebsd-amd64.deb) ...
-Selecting previously unselected package cpp.
-Unpacking cpp (from .../cpp_4%3a4.7.0-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package gcc-4.7.
-Unpacking gcc-4.7 (from .../gcc-4.7_4.7.0-8_kfreebsd-amd64.deb) ...
-Selecting previously unselected package gcc.
-Unpacking gcc (from .../gcc_4%3a4.7.0-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libstdc++6-4.7-dev.
-Unpacking libstdc++6-4.7-dev (from .../libstdc++6-4.7-dev_4.7.0-8_kfreebsd-amd64.deb) ...
-Selecting previously unselected package g++-4.7.
-Unpacking g++-4.7 (from .../g++-4.7_4.7.0-8_kfreebsd-amd64.deb) ...
-Selecting previously unselected package g++.
-Unpacking g++ (from .../g++_4%3a4.7.0-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package build-essential.
-Unpacking build-essential (from .../build-essential_11.5_kfreebsd-amd64.deb) ...
-Setting up cpp-4.7 (4.7.0-8) ...
-Setting up cpp (4:4.7.0-6) ...
-Setting up gcc-4.7 (4.7.0-8) ...
-Setting up gcc (4:4.7.0-6) ...
-Setting up g++-4.7 (4.7.0-8) ...
-Setting up g++ (4:4.7.0-6) ...
-update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode.
-Setting up build-essential (11.5) ...
-Setting up libstdc++6-4.7-dev (4.7.0-8) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- file fontconfig-config gettext gettext-base groff-base html2text
- intltool-debian libasprintf0c2 libcroco3 libffi5 libfontconfig1 libfreetype6
- libgd-gd2-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1 libpipeline1
- libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
- libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- dh-make gettext-doc groff ttf-dustin libgd-tools less www-browser
- libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev debhelper file fontconfig-config gettext gettext-base
- groff-base help2man html2text intltool-debian libasprintf0c2 libcroco3
- libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl libgd-graph-perl
- libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0 libgtextutils-dev
- libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1 libperlio-gzip-perl
- libpipeline1 libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxml2 libxpm4 man-db pkg-config po-debconf ttf-dejavu-core
-0 upgraded, 41 newly installed, 0 to remove and 1 not upgraded.
-Need to get 935 kB/14.5 MB of archives.
-After this operation, 34.7 MB of additional disk space will be used.
-Get:1 http://ftp.gr.debian.org/debian/ sid/main libgd2-xpm kfreebsd-amd64 2.0.36~rc1~dfsg-6.1 [233 kB]
-Get:2 http://ftp.gr.debian.org/debian/ sid/main libgtextutils0 kfreebsd-amd64 0.6.2-1 [21.1 kB]
-Get:3 http://ftp.gr.debian.org/debian/ sid/main libgtextutils-dev kfreebsd-amd64 0.6.2-1 [26.1 kB]
-Get:4 http://ftp.gr.debian.org/debian/ sid/main libperlio-gzip-perl kfreebsd-amd64 0.18-1+b2 [19.0 kB]
-Get:5 http://ftp.gr.debian.org/debian/ sid/main libgd-gd2-perl kfreebsd-amd64 1:2.46-3+b1 [200 kB]
-Get:6 http://ftp.gr.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:7 http://ftp.gr.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 935 kB in 0s (1578 kB/s)
-Selecting previously unselected package libpipeline1:kfreebsd-amd64.
-(Reading database ... 11609 files and directories currently installed.)
-Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.1-1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libpopt0:kfreebsd-amd64.
-Unpacking libpopt0:kfreebsd-amd64 (from .../libpopt0_1.16-5_kfreebsd-amd64.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libasprintf0c2:kfreebsd-amd64.
-Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-7_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libmagic1:kfreebsd-amd64.
-Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_5.11-1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libxml2:kfreebsd-amd64.
-Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.7.8.dfsg-9_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libffi5:kfreebsd-amd64.
-Unpacking libffi5:kfreebsd-amd64 (from .../libffi5_3.0.10-3_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libglib2.0-0:kfreebsd-amd64.
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-Building database of manual pages ...
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-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
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-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.6_4.6.3-5 gcc-4.7_4.7.0-8 kfreebsd-kernel-headers_0.80 libc0.1-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8
-Package versions: apt_0.9.3 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-5 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.2 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4 [...]
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
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-Check disc space
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture kfreebsd-amd64
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=x86_64-kfreebsd-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/x86_64-kfreebsd-gnu --libexecdir=\${prefix}/lib/x86_64-kfreebsd-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
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-checking whether gcc accepts -g... yes
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-checking for style of include used by make... GNU
-checking dependency style of gcc... none
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-checking whether g++ accepts -g... yes
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-checking command to parse /usr/bin/nm -B output from gcc object... ok
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-checking whether we are using the GNU C++ compiler... (cached) yes
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-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
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-checking if gcc PIC flag -fPIC -DPIC works... yes
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-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld -m elf_x86_64_fbsd) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
-checking if libtool supports shared libraries... yes
-checking whether to build shared libraries... yes
-checking whether to build static libraries... yes
-checking for ld used by g++... /usr/bin/ld -m elf_x86_64_fbsd
-checking if the linker (/usr/bin/ld -m elf_x86_64_fbsd) is GNU ld... yes
-checking whether the g++ linker (/usr/bin/ld -m elf_x86_64_fbsd) supports shared libraries... yes
-checking for g++ option to produce PIC... -fPIC -DPIC
-checking if g++ PIC flag -fPIC -DPIC works... yes
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-checking whether the g++ linker (/usr/bin/ld -m elf_x86_64_fbsd) supports shared libraries... yes
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
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-checking pkg-config is at least version 0.9.0... yes
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-configure: creating ./config.status
-config.status: creating Makefile
-config.status: creating doc/Makefile
-config.status: creating m4/Makefile
-config.status: creating src/Makefile
-config.status: creating src/libfastx/Makefile
-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
-config.status: creating src/fastx_trimmer/Makefile
-config.status: creating src/fastq_quality_filter/Makefile
-config.status: creating src/fastq_quality_trimmer/Makefile
-config.status: creating src/fastx_artifacts_filter/Makefile
-config.status: creating src/fastx_reverse_complement/Makefile
-config.status: creating src/fastx_collapser/Makefile
-config.status: creating src/fastx_uncollapser/Makefile
-config.status: creating src/seqalign_test/Makefile
-config.status: creating src/fasta_formatter/Makefile
-config.status: creating src/fasta_nucleotide_changer/Makefile
-config.status: creating src/fastx_renamer/Makefile
-config.status: creating src/fastq_masker/Makefile
-config.status: creating galaxy/Makefile
-config.status: creating galaxy/tools/Makefile
-config.status: creating galaxy/tools/fastx_toolkit/Makefile
-config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile
-config.status: creating galaxy/test-data/Makefile
-config.status: creating galaxy/static/Makefile
-config.status: creating galaxy/static/fastx_icons/Makefile
-config.status: creating galaxy/tool-data/Makefile
-config.status: creating scripts/Makefile
-config.status: creating build_scripts/Makefile
-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
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-Making all in fastx_quality_stats
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-Making all in fastq_quality_converter
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/sh [...]
- gzip -9nf usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/sh [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debi [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1310
-
-fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: kfreebsd-amd64
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 57f3613a10e655a2080b34307d1acb79ff782845 119490 fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.deb
-Checksums-Sha256:
- 8a00cfe29105e5ae972f44bf324dc1b56493fa34de909803487a53f00561479d 119490 fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.deb
-Files:
- 67a52f8250d2762882a637a55d354b9a 119490 science optional fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_kfreebsd-amd64.deb
-───────────────────────────────────────────
-
- new debian package, version 2.0.
- size 119490 bytes: control archive= 2153 bytes.
- 1089 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: kfreebsd-amd64
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 419
- Depends: libc0.1 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/man/man1/
--rw-r--r-- root/root 688 2012-05-15 13:10 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 558 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 659 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 728 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 661 2012-05-15 13:10 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 599 2012-05-15 13:10 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 904 2012-05-15 13:10 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 505 2012-05-15 13:10 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 929 2012-05-15 13:10 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 557 2012-05-15 13:10 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 638 2012-05-15 13:10 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 13:10 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 468 2012-05-15 13:10 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 2217 2012-05-15 13:10 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 583 2012-05-15 13:10 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 590 2012-05-15 13:10 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 922 2012-05-15 13:10 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 645 2012-05-15 13:10 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 518 2012-05-15 13:10 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 613 2012-05-15 13:10 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
-drwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/bin/
--rwxr-xr-x root/root 51952 2012-05-15 13:10 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 18680 2012-05-15 13:10 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 22848 2012-05-15 13:10 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 14576 2012-05-15 13:10 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 18680 2012-05-15 13:10 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 18672 2012-05-15 13:10 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 18680 2012-05-15 13:10 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18664 2012-05-15 13:10 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 18672 2012-05-15 13:10 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 27192 2012-05-15 13:10 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 27312 2012-05-15 13:10 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 18832 2012-05-15 13:10 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 18664 2012-05-15 13:10 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 18680 2012-05-15 13:10 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 18672 2012-05-15 13:10 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 13925 2012-05-15 13:10 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 5896 2012-05-15 13:10 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 6069 2012-05-15 13:10 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 5380 2012-05-15 13:10 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 13:10 ./usr/bin/fasta_clipping_histogram.pl
-lrwxr-xr-x root/root 0 2012-05-15 13:10 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1337087169-63317/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-amd64-eTbWps
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- autotools-dev* build-essential* cpp* cpp-4.7* debhelper* file*
- fontconfig-config* g++* g++-4.7* gcc* gcc-4.7* gettext* gettext-base*
- groff-base* help2man* html2text* intltool-debian* libasprintf0c2* libcroco3*
- libffi5* libfontconfig1* libfreetype6* libgd-gd2-perl* libgd-graph-perl*
- libgd-text-perl* libgd2-xpm* libgettextpo0* libglib2.0-0* libgtextutils-dev*
- libgtextutils0* libjpeg8* liblocale-gettext-perl* libmagic1*
- libperlio-gzip-perl* libpipeline1* libpopt0* libstdc++6-4.7-dev*
- libunistring0* libx11-6* libx11-data* libxau6* libxcb1* libxdmcp6* libxml2*
- libxpm4* man-db* pkg-config* po-debconf* ttf-dejavu-core*
-0 upgraded, 0 newly installed, 49 to remove and 1 not upgraded.
-After this operation, 89.7 MB disk space will be freed.
-(Reading database ... 13621 files and directories currently installed.)
-Removing autotools-dev ...
-Removing build-essential ...
-Removing g++ ...
-Removing gcc ...
-Removing cpp ...
-Removing debhelper ...
-Removing file ...
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-Removing libgd-text-perl ...
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-Removing libgd2-xpm:kfreebsd-amd64 ...
-Purging configuration files for libgd2-xpm:kfreebsd-amd64 ...
-Removing libfontconfig1:kfreebsd-amd64 ...
-Purging configuration files for libfontconfig1:kfreebsd-amd64 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing help2man ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:kfreebsd-amd64 ...
-Removing libcroco3:kfreebsd-amd64 ...
-Purging configuration files for libcroco3:kfreebsd-amd64 ...
-Removing pkg-config ...
-Removing libglib2.0-0:kfreebsd-amd64 ...
-Purging configuration files for libglib2.0-0:kfreebsd-amd64 ...
-Removing libffi5:kfreebsd-amd64 ...
-Purging configuration files for libffi5:kfreebsd-amd64 ...
-Removing libfreetype6:kfreebsd-amd64 ...
-Purging configuration files for libfreetype6:kfreebsd-amd64 ...
-Removing libgettextpo0:kfreebsd-amd64 ...
-Removing libgtextutils-dev ...
-Removing libgtextutils0 ...
-Purging configuration files for libgtextutils0 ...
-Removing libjpeg8:kfreebsd-amd64 ...
-Removing liblocale-gettext-perl ...
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-Purging configuration files for libmagic1:kfreebsd-amd64 ...
-Removing libperlio-gzip-perl ...
-Removing libpipeline1:kfreebsd-amd64 ...
-Purging configuration files for libpipeline1:kfreebsd-amd64 ...
-Removing libpopt0:kfreebsd-amd64 ...
-Purging configuration files for libpopt0:kfreebsd-amd64 ...
-Removing libunistring0:kfreebsd-amd64 ...
-Purging configuration files for libunistring0:kfreebsd-amd64 ...
-Removing libxpm4:kfreebsd-amd64 ...
-Purging configuration files for libxpm4:kfreebsd-amd64 ...
-Removing libx11-6:kfreebsd-amd64 ...
-Purging configuration files for libx11-6:kfreebsd-amd64 ...
-Removing libx11-data ...
-Removing libxcb1:kfreebsd-amd64 ...
-Purging configuration files for libxcb1:kfreebsd-amd64 ...
-Removing libxau6:kfreebsd-amd64 ...
-Purging configuration files for libxau6:kfreebsd-amd64 ...
-Removing libxdmcp6:kfreebsd-amd64 ...
-Purging configuration files for libxdmcp6:kfreebsd-amd64 ...
-Removing libxml2:kfreebsd-amd64 ...
-Purging configuration files for libxml2:kfreebsd-amd64 ...
-Removing ttf-dejavu-core ...
-Removing g++-4.7 ...
-Removing libstdc++6-4.7-dev ...
-Removing gcc-4.7 ...
-Removing cpp-4.7 ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: kfreebsd-amd64
-Build-Space: 10528
-Build-Time: 54
-Distribution: sid
-Install-Time: 170
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 253
-Source-Version: 0.0.13.2-1
-Space: 10528
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1310
-Build needed 00:04:13, 10528k disc space
-Signature with key '94C0145B' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
deleted file mode 100644
index 05d89f8..0000000
--- a/kfreebsd-i386.log
+++ /dev/null
@@ -1,1543 +0,0 @@
-From buildd at finzi.debian.org Tue May 15 13:21:07 2012
-Return-path: <buildd at finzi.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
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- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
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- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
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-Message-Id: <E1SUHgV-000E3k-M4 at finzi.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 13:21:03 +0000
-From: buildd on finzi <buildd at finzi.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on kfreebsd-i386
- (dist=sid)
-Key-Id: B3DA9773
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (kfreebsd-i386) 15 May 2012 13:17 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: kfreebsd-i386
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://mirror-ubc.debian.org sid InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://mirror-ubc.debian.org sid/main Sources
-Hit http://mirror-ubc.debian.org sid/contrib Sources
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages
-Hit http://mirror-ubc.debian.org sid/contrib Translation-en
-Hit http://mirror-ubc.debian.org sid/main Translation-en
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages
-Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages
-Hit http://incoming.debian.org sid/contrib Translation-en
-Hit http://incoming.debian.org sid/main Translation-en
-Get:2 http://incoming.debian.org Release [1601 B]
-Get:3 http://incoming.debian.org Sources [64.6 kB]
-Get:4 http://incoming.debian.org Packages [791 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 858 kB in 3s (253 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (350 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libfontconfig1
- libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm libgettextpo0
- libglib2.0-0 libgtextutils0 libjpeg8 libmagic1 libpcre3 libpipeline1
- libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 libmagic1 libpcre3
- libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-0 upgraded, 43 newly installed, 0 to remove and 1 not upgraded.
-Need to get 931 kB/15.0 MB of archives.
-After this operation, 35.2 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ sid/main libgd2-xpm kfreebsd-i386 2.0.36~rc1~dfsg-6.1 [231 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ sid/main libgtextutils0 kfreebsd-i386 0.6.2-1 [21.1 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ sid/main libgtextutils-dev kfreebsd-i386 0.6.2-1 [26.1 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ sid/main libperlio-gzip-perl kfreebsd-i386 0.18-1+b2 [19.0 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ sid/main libgd-gd2-perl kfreebsd-i386 1:2.46-3+b1 [198 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ sid/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ sid/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 931 kB in 0s (2492 kB/s)
-Selecting previously unselected package libpipeline1:kfreebsd-i386.
-(Reading database ... 11279 files and directories currently installed.)
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-Setting up libpipeline1:kfreebsd-i386 (1.2.1-1) ...
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-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU/kFreeBSD 8.1-1-686 kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.7_4.7.0-8 kfreebsd-kernel-headers_0.80 libc0.1-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8
-Package versions: apt_0.9.3 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.2 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils [...]
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
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-─────────────
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture kfreebsd-i386
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=i486-kfreebsd-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/i386-kfreebsd-gnu --libexecdir=\${prefix}/lib/i386-kfreebsd-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
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-checking whether make sets $(MAKE)... yes
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-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... i486-pc-kfreebsd-gnu
-checking host system type... i486-pc-kfreebsd-gnu
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-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... 196608
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
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-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
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-checking whether we are using the GNU C++ compiler... (cached) yes
-checking whether g++ accepts -g... (cached) yes
-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
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-checking if gcc PIC flag -fPIC -DPIC works... yes
-checking if gcc static flag -static works... yes
-checking if gcc supports -c -o file.o... yes
-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
-checking if libtool supports shared libraries... yes
-checking whether to build shared libraries... yes
-checking whether to build static libraries... yes
-checking for ld used by g++... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
-checking for g++ option to produce PIC... -fPIC -DPIC
-checking if g++ PIC flag -fPIC -DPIC works... yes
-checking if g++ static flag -static works... yes
-checking if g++ supports -c -o file.o... yes
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-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking for long long int... yes
-checking for ISO C++ TR1 include files... yes
-checking for pkg-config... /usr/bin/pkg-config
-checking pkg-config is at least version 0.9.0... yes
-checking for GTEXTUTILS... yes
-configure: creating ./config.status
-config.status: creating Makefile
-config.status: creating doc/Makefile
-config.status: creating m4/Makefile
-config.status: creating src/Makefile
-config.status: creating src/libfastx/Makefile
-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
-config.status: creating src/fastx_trimmer/Makefile
-config.status: creating src/fastq_quality_filter/Makefile
-config.status: creating src/fastq_quality_trimmer/Makefile
-config.status: creating src/fastx_artifacts_filter/Makefile
-config.status: creating src/fastx_reverse_complement/Makefile
-config.status: creating src/fastx_collapser/Makefile
-config.status: creating src/fastx_uncollapser/Makefile
-config.status: creating src/seqalign_test/Makefile
-config.status: creating src/fasta_formatter/Makefile
-config.status: creating src/fasta_nucleotide_changer/Makefile
-config.status: creating src/fastx_renamer/Makefile
-config.status: creating src/fastq_masker/Makefile
-config.status: creating galaxy/Makefile
-config.status: creating galaxy/tools/Makefile
-config.status: creating galaxy/tools/fastx_toolkit/Makefile
-config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile
-config.status: creating galaxy/test-data/Makefile
-config.status: creating galaxy/static/Makefile
-config.status: creating galaxy/static/fastx_icons/Makefile
-config.status: creating galaxy/tool-data/Makefile
-config.status: creating scripts/Makefile
-config.status: creating build_scripts/Makefile
-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/sh [...]
- gzip -9nf usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/sh [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debi [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_kfreebsd-i386.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1320
-
-fastx-toolkit_0.0.13.2-1_kfreebsd-i386.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: kfreebsd-i386
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 7c29a771355febec91298a620ab72c23b48c8d0b 114072 fastx-toolkit_0.0.13.2-1_kfreebsd-i386.deb
-Checksums-Sha256:
- a164cadb110fe5d9e6afcf26a4e40a1ebb4ce9673844b4ffb6853d9ab80c5796 114072 fastx-toolkit_0.0.13.2-1_kfreebsd-i386.deb
-Files:
- 3ff98ec3af3e99144a6990b98bdc6f51 114072 science optional fastx-toolkit_0.0.13.2-1_kfreebsd-i386.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_kfreebsd-i386.deb
-──────────────────────────────────────────
-
- new debian package, version 2.0.
- size 114072 bytes: control archive= 2145 bytes.
- 1088 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: kfreebsd-i386
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 367
- Depends: libc0.1 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/man/man1/
--rw-r--r-- root/root 688 2012-05-15 13:20 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 558 2012-05-15 13:20 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 659 2012-05-15 13:20 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 728 2012-05-15 13:20 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 661 2012-05-15 13:20 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 599 2012-05-15 13:20 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 904 2012-05-15 13:20 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 505 2012-05-15 13:20 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 929 2012-05-15 13:20 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 557 2012-05-15 13:20 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 638 2012-05-15 13:20 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 13:20 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 468 2012-05-15 13:20 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 2218 2012-05-15 13:20 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 583 2012-05-15 13:20 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 590 2012-05-15 13:20 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 922 2012-05-15 13:20 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 645 2012-05-15 13:20 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 518 2012-05-15 13:20 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 613 2012-05-15 13:20 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
-drwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/bin/
--rwxr-xr-x root/root 46908 2012-05-15 13:20 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 17880 2012-05-15 13:20 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 17904 2012-05-15 13:20 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 13780 2012-05-15 13:20 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 13784 2012-05-15 13:20 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 17876 2012-05-15 13:20 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 17880 2012-05-15 13:20 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 13776 2012-05-15 13:20 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 13780 2012-05-15 13:20 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 22148 2012-05-15 13:20 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 26304 2012-05-15 13:20 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 13872 2012-05-15 13:20 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 13776 2012-05-15 13:20 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 13784 2012-05-15 13:20 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 13784 2012-05-15 13:20 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 13925 2012-05-15 13:20 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 5896 2012-05-15 13:20 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 6069 2012-05-15 13:20 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 5380 2012-05-15 13:20 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 13:20 ./usr/bin/fasta_clipping_histogram.pl
-lrwxr-xr-x root/root 0 2012-05-15 13:20 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1337087856-48266/build/buildd-fastx-toolkit_0.0.13.2-1-kfreebsd-i386-dc0bsA
-Reading package lists...
-Building dependency tree...
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-The following packages will be REMOVED:
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- gettext-base* groff-base* help2man* html2text* intltool-debian*
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-After this operation, 35.2 MB disk space will be freed.
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-Removing ttf-dejavu-core ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: kfreebsd-i386
-Build-Space: 8312
-Build-Time: 84
-Distribution: sid
-Install-Time: 59
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 177
-Source-Version: 0.0.13.2-1
-Space: 8312
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1320
-Build needed 00:02:57, 8312k disc space
-Signature with key 'B3DA9773' requested:
diff --git a/mips.log b/mips.log
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@@ -1,3066 +0,0 @@
-From buildd at ball.debian.org Tue May 15 13:00:29 2012
-Return-path: <buildd at ball.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
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- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
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-Date: Tue, 15 May 2012 13:00:27 +0000
-Message-Id: <E1SUHMZ-0005F8-1G at ball.debian.org>
-From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on mips
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ball.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (mips) 15 May 2012 12:51 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
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-Ign http://incoming.debian.org InRelease
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-Reading package lists...
-Building dependency tree...
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
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-Checking for dependency conflicts...
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Need to get 26.1 MB of archives.
-After this operation, 40.2 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main perl mips 5.14.2-10 [3946 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main perl-base mips 5.14.2-10 [1491 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main perl-modules all 5.14.2-10 [3438 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mips 1.2.1-1 [36.7 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libpopt0 mips 1.16-4 [57.2 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main liblocale-gettext-perl mips 1.05-7+b1 [19.5 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-7 [26.6 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mips 5.11-1 [253 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libpcre3 mips 1:8.30-5 [245 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-9 [860 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mips 2.32.2-1 [1988 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mips 0.6.5-1 [140 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mips 2.1.0-1 [145 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 mips 2.4.9-1 [433 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu3 [70.8 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 mips 2.9.0-5 [301 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 mips 8d-1 [146 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 mips 1.2.49-1 [184 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 mips 1:1.0.7-1 [18.3 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.1-1 [25.5 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 mips 1.8.1-1 [41.2 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.99.901-2 [867 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxpm4 mips 1:3.5.10-1 [46.6 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libgd2-xpm mips 2.0.36~rc1~dfsg-6.1 [228 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-7 [139 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mips 9.0.1 [207 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main groff-base mips 1.21-7 [1154 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main man-db mips 2.6.1-2 [1024 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main file mips 5.11-1 [53.2 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-7 [134 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main dpkg-dev all 1.16.3 [1184 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libdpkg-perl all 1.16.3 [881 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libfile-fcntllock-perl mips 0.14-1+b1 [17.1 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main gettext mips 0.18.1.1-7 [1919 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main help2man mips 1.40.9 [95.9 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libgtextutils0 mips 0.6.2-1 [20.8 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libgtextutils-dev mips 0.6.2-1 [26.0 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main libperlio-gzip-perl mips 0.18-1+b2 [18.7 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main pkg-config mips 0.26-1 [58.0 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main libgd-gd2-perl mips 1:2.46-3+b1 [182 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 26.1 MB in 9s (2645 kB/s)
-(Reading database ... 10640 files and directories currently installed.)
-Preparing to replace perl 5.14.2-6 (using .../perl_5.14.2-10_mips.deb) ...
-Unpacking replacement perl ...
-Preparing to replace perl-base 5.14.2-6 (using .../perl-base_5.14.2-10_mips.deb) ...
-Unpacking replacement perl-base ...
-Setting up perl-base (5.14.2-10) ...
-(Reading database ... 10640 files and directories currently installed.)
-Preparing to replace perl-modules 5.14.2-6 (using .../perl-modules_5.14.2-10_all.deb) ...
-Unpacking replacement perl-modules ...
-Selecting previously unselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mips.deb) ...
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-Selecting previously unselected package liblocale-gettext-perl.
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-Unpacking replacement dpkg-dev ...
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-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libpopt0 (1.16-4) ...
-Setting up liblocale-gettext-perl (1.05-7+b1) ...
-Setting up libasprintf0c2 (0.18.1.1-7) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-5) ...
-Setting up libxml2 (2.7.8.dfsg-9) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.2-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libexpat1 (2.1.0-1) ...
-Setting up libfreetype6 (2.4.9-1) ...
-Setting up ucf (3.0025+nmu3) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1 (2.9.0-5) ...
-Setting up libjpeg8 (8d-1) ...
-Setting up libpng12-0 (1.2.49-1) ...
-Setting up libxau6 (1:1.0.7-1) ...
-Setting up libxdmcp6 (1:1.1.1-1) ...
-Setting up libxcb1 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.99.901-2) ...
-Setting up libx11-6 (2:1.4.99.901-2) ...
-Setting up libxpm4 (1:3.5.10-1) ...
-Setting up libgd2-xpm (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libgettextpo0 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up pkg-config (0.26-1) ...
-Setting up perl-modules (5.14.2-10) ...
-Setting up perl (5.14.2-10) ...
-Setting up libdpkg-perl (1.16.3) ...
-Setting up libfile-fcntllock-perl (0.14-1+b1) ...
-Setting up dpkg-dev (1.16.3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libperlio-gzip-perl (0.18-1+b2) ...
-Setting up libgd-gd2-perl (1:2.46-3+b1) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 75 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mips (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.3 g++-4.6_4.6.2-12 gcc-4.6_4.6.2-12 libc6-dev_2.13-24 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 linux-libc-dev_3.2.1-2
-Package versions: apt_0.8.15.9 autotools-dev_20120210.1 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.3 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fontc [...]
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Unpack source
-─────────────
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
-
-Check disc space
-────────────────
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-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture mips
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=mips-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/mips-linux-gnu --libexecdir=\${prefix}/lib/mips-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... no
-checking for mawk... mawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... gcc
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... mips-unknown-linux-gnu
-checking host system type... mips-unknown-linux-gnu
-checking for a sed that does not truncate output... /bin/sed
-checking for grep that handles long lines and -e... /bin/grep
-checking for egrep... /bin/grep -E
-checking for fgrep... /bin/grep -F
-checking for ld used by gcc... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... 402653181
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
-checking for strip... strip
-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
-checking for sys/types.h... yes
-checking for sys/stat.h... yes
-checking for stdlib.h... yes
-checking for string.h... yes
-checking for memory.h... yes
-checking for strings.h... yes
-checking for inttypes.h... yes
-checking for stdint.h... yes
-checking for unistd.h... yes
-checking for dlfcn.h... yes
-checking whether we are using the GNU C++ compiler... (cached) yes
-checking whether g++ accepts -g... (cached) yes
-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
-checking for gcc option to produce PIC... -fPIC -DPIC
-checking if gcc PIC flag -fPIC -DPIC works... yes
-checking if gcc static flag -static works... yes
-checking if gcc supports -c -o file.o... yes
-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
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-libtool: link: g++ -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
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-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
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-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
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-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
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-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
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-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
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-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
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-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
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-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
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-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/m4'
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-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/libfastx'
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-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_clipper'
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-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
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-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
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-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
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-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
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-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
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-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
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-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
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-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man [...]
- gzip -9nf usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/u [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_mips.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1300
-
-fastx-toolkit_0.0.13.2-1_mips.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: mips
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- d52f15417c74084af8f4bdde911a3a7590430c1d 125398 fastx-toolkit_0.0.13.2-1_mips.deb
-Checksums-Sha256:
- 8ccfa2e2549aae2ad06ae0137eaf27966f9f130919d53fed91ecaf9c0a19e4b4 125398 fastx-toolkit_0.0.13.2-1_mips.deb
-Files:
- ae16af7181b52613a0ccadfd189859e8 125398 science optional fastx-toolkit_0.0.13.2-1_mips.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_mips.deb
-─────────────────────────────────
-
- new debian package, version 2.0.
- size 125398 bytes: control archive= 2141 bytes.
- 1079 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: mips
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 461
- Depends: libc6 (>= 2.3.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/share/man/man1/
--rw-r--r-- root/root 661 2012-05-15 12:59 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:59 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:59 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:59 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:59 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:59 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 613 2012-05-15 12:59 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:59 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:59 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:59 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:59 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:59 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:59 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:59 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:59 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 2211 2012-05-15 12:59 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:59 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:59 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:59 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:59 ./usr/share/man/man1/fastx_renamer.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:59 ./usr/bin/
--rwxr-xr-x root/root 5380 2012-05-15 12:59 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 28260 2012-05-15 12:59 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 57700 2012-05-15 12:59 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 19052 2012-05-15 12:59 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 19020 2012-05-15 12:59 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 19020 2012-05-15 12:59 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 19036 2012-05-15 12:59 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 23440 2012-05-15 12:59 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 19084 2012-05-15 12:59 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 19020 2012-05-15 12:59 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 19036 2012-05-15 12:59 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 14924 2012-05-15 12:59 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 2764 2012-05-15 12:59 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 19020 2012-05-15 12:59 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 27812 2012-05-15 12:59 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 13925 2012-05-15 12:59 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 19096 2012-05-15 12:59 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 5896 2012-05-15 12:59 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 6069 2012-05-15 12:59 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 19052 2012-05-15 12:59 ./usr/bin/fastx_artifacts_filter
-lrwxrwxrwx root/root 0 2012-05-15 12:59 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-mips-sbuild-1ca62f03-985e-45f5-b9bd-2ca5abc625b9/build/buildd-fastx-toolkit_0.0.13.2-1-mips-3K5MV0
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: mips
-Build-Space: 8784
-Build-Time: 174
-Distribution: sid
-Install-Time: 199
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 540
-Source-Version: 0.0.13.2-1
-Space: 8784
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1300
-Build needed 00:09:00, 8784k disc space
-Signature with key 'E348DA45' requested:
-
-From buildd at rem.debian.org Tue May 15 14:08:17 2012
-Return-path: <buildd at rem.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
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-Date: Tue, 15 May 2012 14:08:15 +0000
-Message-Id: <E1SUIQB-0007wH-W4 at rem.debian.org>
-From: buildd on rem <buildd at rem.debian.org>
-To: logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on mipsel
- (dist=sid)
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-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on rem.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (mipsel) 15 May 2012 14:02 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: mipsel
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-Check APT
-─────────
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-Download source files with APT
-──────────────────────────────
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-Reading package lists...
-Building dependency tree...
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-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
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-Download complete and in download only mode
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-──────────
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
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-0 upgraded, 0 newly installed, 0 to remove and 81 not upgraded.
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-Checking correctness of dependencies...
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
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-make: already installed (3.81-8.1)
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- shared-mime-info xml-core libmail-sendmail-perl
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-The following packages will be upgraded:
- dpkg-dev libdpkg-perl
-2 upgraded, 46 newly installed, 0 to remove and 79 not upgraded.
-Need to get 17.1 MB of archives.
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture mipsel
- fakeroot debian/rules clean
-dh clean
- dh_testdir
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- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
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- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
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- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=mipsel-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/mipsel-linux-gnu --libexecdir=\${prefix}/lib/mipsel-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
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-configure: creating ./config.status
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-config.status: executing depfiles commands
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
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-Making all in fastx_clipper
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode [...]
- gzip -9nf usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-tool [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_mipsel.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1408
-
-fastx-toolkit_0.0.13.2-1_mipsel.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: mipsel
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 682a4d52e2b10254b9ed429e5282f2e407af3471 125386 fastx-toolkit_0.0.13.2-1_mipsel.deb
-Checksums-Sha256:
- d05d55a9244a1171450a9e2a755ae3716e0934ffc10de55cca949f058c953b4b 125386 fastx-toolkit_0.0.13.2-1_mipsel.deb
-Files:
- 8240daff75edbe6aa69b8b8e91ba5bbc 125386 science optional fastx-toolkit_0.0.13.2-1_mipsel.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_mipsel.deb
-───────────────────────────────────
-
- new debian package, version 2.0.
- size 125386 bytes: control archive= 2146 bytes.
- 1081 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: mipsel
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 461
- Depends: libc6 (>= 2.3.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/man/man1/
--rw-r--r-- root/root 645 2012-05-15 14:07 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 904 2012-05-15 14:07 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 661 2012-05-15 14:07 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 922 2012-05-15 14:07 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 638 2012-05-15 14:07 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 583 2012-05-15 14:07 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 557 2012-05-15 14:07 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 468 2012-05-15 14:07 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 589 2012-05-15 14:07 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 14:07 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 518 2012-05-15 14:07 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 929 2012-05-15 14:07 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 505 2012-05-15 14:07 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 728 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 613 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 2212 2012-05-15 14:07 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 688 2012-05-15 14:07 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 659 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 558 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 599 2012-05-15 14:07 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/bin/
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 19084 2012-05-15 14:07 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 14924 2012-05-15 14:07 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 23440 2012-05-15 14:07 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 19036 2012-05-15 14:07 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 19036 2012-05-15 14:07 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 28260 2012-05-15 14:07 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 13925 2012-05-15 14:07 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 27812 2012-05-15 14:07 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 19096 2012-05-15 14:07 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 5896 2012-05-15 14:07 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 57700 2012-05-15 14:07 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 2764 2012-05-15 14:07 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 19052 2012-05-15 14:07 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5380 2012-05-15 14:07 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 6069 2012-05-15 14:07 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 19052 2012-05-15 14:07 ./usr/bin/fastx_artifacts_filter
-lrwxrwxrwx root/root 0 2012-05-15 14:07 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-f8766a53-f9b4-4e1e-9742-2a39c210a93a/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: mipsel
-Build-Space: 8780
-Build-Time: 170
-Distribution: sid
-Install-Time: 95
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 362
-Source-Version: 0.0.13.2-1
-Space: 8780
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1408
-Build needed 00:06:02, 8780k disc space
-Signature with key 'BDA682F0' requested:
-
diff --git a/mipsel.log b/mipsel.log
deleted file mode 100644
index 115f679..0000000
--- a/mipsel.log
+++ /dev/null
@@ -1,1523 +0,0 @@
-From buildd at rem.debian.org Tue May 15 14:08:17 2012
-Return-path: <buildd at rem.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1SUIQD-0006Jz-H2
- for logs at buildd.debian.org; Tue, 15 May 2012 14:08:17 +0000
-Received: from rem.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d06])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=rem.debian.org, EMAIL=hostmaster at rem.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1SUIQC-0007kD-HW
- for logs at buildd.debian.org; Tue, 15 May 2012 14:08:16 +0000
-Received: from buildd by rem.debian.org with local (Exim 4.72)
- (envelope-from <buildd at rem.debian.org>) id 1SUIQB-0007wH-W4
- for logs at buildd.debian.org; Tue, 15 May 2012 14:08:16 +0000
-Date: Tue, 15 May 2012 14:08:15 +0000
-Message-Id: <E1SUIQB-0007wH-W4 at rem.debian.org>
-From: buildd on rem <buildd at rem.debian.org>
-To: logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on mipsel
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on rem.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (mipsel) 15 May 2012 14:02 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: mipsel
-Get:1 http://mirror.ayous.org unstable InRelease [234 kB]
-Get:2 http://incoming.debian.org unstable InRelease [234 kB]
-Get:3 http://mirror.ayous.org unstable/main Sources [6293 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://mirror.ayous.org unstable/contrib Sources [54.7 kB]
-Get:5 http://mirror.ayous.org unstable/non-free Sources [96.8 kB]
-Get:6 http://mirror.ayous.org unstable/main mipsel Packages [5814 kB]
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:9 http://mirror.ayous.org unstable/contrib mipsel Packages [37.1 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:10 http://mirror.ayous.org unstable/main TranslationIndex [2295 B]
-Get:11 http://mirror.ayous.org unstable/contrib Translation-en [36.6 kB]
-Get:12 http://mirror.ayous.org unstable/main Translation-en [3949 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:15 http://incoming.debian.org unstable/main mipsel Packages [5814 kB]
-Get:16 http://incoming.debian.org unstable/contrib mipsel Packages [37.1 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3949 kB]
-Get:21 http://incoming.debian.org Sources [65.2 kB]
-Get:22 http://incoming.debian.org Packages [790 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.9 MB in 1min 1s (550 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (422 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 81 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 81 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.5)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils dpkg-dev file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libdpkg-perl libexpat1
- libffi5 libfile-fcntllock-perl libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0 libgtextutils0
- libjpeg8 liblocale-gettext-perl libmagic1 libpcre3 libpipeline1 libpng12-0
- libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
- libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make debian-keyring gettext-doc groff
- ttf-dustin libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- libalgorithm-merge-perl curl wget lynx-cur autopoint libglib2.0-data
- shared-mime-info xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfile-fcntllock-perl libfontconfig1
- libfreetype6 libgd-gd2-perl libgd-graph-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils-dev libgtextutils0 libjpeg8
- liblocale-gettext-perl libmagic1 libpcre3 libperlio-gzip-perl libpipeline1
- libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxml2 libxpm4 man-db pkg-config po-debconf ttf-dejavu-core
-The following packages will be upgraded:
- dpkg-dev libdpkg-perl
-2 upgraded, 46 newly installed, 0 to remove and 79 not upgraded.
-Need to get 17.1 MB of archives.
-After this operation, 39.9 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.1-1 [36.7 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main libpopt0 mipsel 1.16-5 [56.5 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main liblocale-gettext-perl mipsel 1.05-7+b1 [19.5 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-7 [26.4 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.11-1 [251 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 1:8.30-5 [245 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-9 [860 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libffi5 mipsel 3.0.10-3 [22.8 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.2-1 [1982 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.5-1 [139 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.1.0-1 [144 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.9-1 [434 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.9.0-5 [301 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8d-1 [145 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.49-1 [185 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.7-1 [18.2 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.1-1 [26.1 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.8.1-1 [41.0 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.99.901-2 [866 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main libxpm4 mipsel 1:3.5.10-1 [46.7 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libgd2-xpm mipsel 2.0.36~rc1~dfsg-6.1 [227 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-7 [139 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.1 [206 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-7 [1106 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.1-2 [1026 kB]
-Get:30 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.11-1 [53.0 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-7 [140 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main dpkg-dev all 1.16.3 [1184 kB]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libdpkg-perl all 1.16.3 [881 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libfile-fcntllock-perl mipsel 0.14-1+b1 [17.2 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-7 [1917 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main help2man mipsel 1.40.9 [95.0 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libgtextutils0 mipsel 0.6.2-1 [20.8 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main libgtextutils-dev mipsel 0.6.2-1 [26.0 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main libperlio-gzip-perl mipsel 0.18-1+b2 [18.7 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main pkg-config mipsel 0.26-1 [57.9 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main libgd-gd2-perl mipsel 1:2.46-3+b1 [183 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 17.1 MB in 2s (7933 kB/s)
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10676 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
-Selecting previously unselected package libpopt0.
-Unpacking libpopt0 (from .../libpopt0_1.16-5_mipsel.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_mipsel.deb) ...
-Selecting previously unselected package libasprintf0c2.
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-5_mipsel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-9_mipsel.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_mipsel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.2-1_mipsel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_mipsel.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1_mipsel.deb) ...
-Selecting previously unselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.9-1_mipsel.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
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-Package versions: apt_0.8.15.9 autotools-dev_20120210.1 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.3 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fon [...]
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture mipsel
- fakeroot debian/rules clean
-dh clean
- dh_testdir
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- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
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- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
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-configure: creating ./config.status
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-config.status: executing depfiles commands
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making all in src
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making all in fastx_quality_stats
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
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-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode [...]
- gzip -9nf usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-tool [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_mipsel.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1408
-
-fastx-toolkit_0.0.13.2-1_mipsel.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: mipsel
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 682a4d52e2b10254b9ed429e5282f2e407af3471 125386 fastx-toolkit_0.0.13.2-1_mipsel.deb
-Checksums-Sha256:
- d05d55a9244a1171450a9e2a755ae3716e0934ffc10de55cca949f058c953b4b 125386 fastx-toolkit_0.0.13.2-1_mipsel.deb
-Files:
- 8240daff75edbe6aa69b8b8e91ba5bbc 125386 science optional fastx-toolkit_0.0.13.2-1_mipsel.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_mipsel.deb
-───────────────────────────────────
-
- new debian package, version 2.0.
- size 125386 bytes: control archive= 2146 bytes.
- 1081 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: mipsel
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 461
- Depends: libc6 (>= 2.3.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/man/man1/
--rw-r--r-- root/root 645 2012-05-15 14:07 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 904 2012-05-15 14:07 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 661 2012-05-15 14:07 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 922 2012-05-15 14:07 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 638 2012-05-15 14:07 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 583 2012-05-15 14:07 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 557 2012-05-15 14:07 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 468 2012-05-15 14:07 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 589 2012-05-15 14:07 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 14:07 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 518 2012-05-15 14:07 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 929 2012-05-15 14:07 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 505 2012-05-15 14:07 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 728 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 613 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 2212 2012-05-15 14:07 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 688 2012-05-15 14:07 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 659 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 558 2012-05-15 14:07 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 599 2012-05-15 14:07 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
-drwxr-xr-x root/root 0 2012-05-15 14:07 ./usr/bin/
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 19084 2012-05-15 14:07 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 14924 2012-05-15 14:07 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 23440 2012-05-15 14:07 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 19036 2012-05-15 14:07 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 19036 2012-05-15 14:07 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 28260 2012-05-15 14:07 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 13925 2012-05-15 14:07 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 27812 2012-05-15 14:07 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 19096 2012-05-15 14:07 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 5896 2012-05-15 14:07 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 57700 2012-05-15 14:07 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 2764 2012-05-15 14:07 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 19052 2012-05-15 14:07 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5380 2012-05-15 14:07 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 19020 2012-05-15 14:07 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 6069 2012-05-15 14:07 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 19052 2012-05-15 14:07 ./usr/bin/fastx_artifacts_filter
-lrwxrwxrwx root/root 0 2012-05-15 14:07 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-f8766a53-f9b4-4e1e-9742-2a39c210a93a/build/buildd-fastx-toolkit_0.0.13.2-1-mipsel-wR6KfD
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: mipsel
-Build-Space: 8780
-Build-Time: 170
-Distribution: sid
-Install-Time: 95
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 362
-Source-Version: 0.0.13.2-1
-Space: 8780
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1408
-Build needed 00:06:02, 8780k disc space
-Signature with key 'BDA682F0' requested:
-
diff --git a/powerpc.log b/powerpc.log
deleted file mode 100644
index 7cd1e22..0000000
--- a/powerpc.log
+++ /dev/null
@@ -1,1493 +0,0 @@
-From buildd at parry.debian.org Tue May 15 12:38:15 2012
-Return-path: <buildd at parry.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at parry.debian.org>)
- id 1SUH14-00070a-NF
- for logs at buildd.debian.org; Tue, 15 May 2012 12:38:15 +0000
-Received: from parry.debian.org ([140.211.15.153])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=parry.debian.org, EMAIL=hostmaster at parry.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at parry.debian.org>)
- id 1SUH12-00081j-KR; Tue, 15 May 2012 12:38:13 +0000
-Received: from buildd by parry.debian.org with local (Exim 4.72)
- (envelope-from <buildd at parry.debian.org>)
- id 1SUH10-0006ot-Fl; Tue, 15 May 2012 12:38:10 +0000
-Date: Tue, 15 May 2012 12:38:10 +0000
-Message-Id: <E1SUH10-0006ot-Fl at parry.debian.org>
-From: buildd on parry <buildd at parry.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on powerpc
- (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on parry.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (powerpc) 15 May 2012 12:35 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: powerpc
-Get:1 http://incoming.debian.org unstable InRelease [234 kB]
-Get:2 http://debian.osuosl.org unstable InRelease [234 kB]
-Get:3 http://debian.osuosl.org unstable/main Sources [6293 kB]
-Get:4 http://debian.osuosl.org unstable/contrib Sources [54.7 kB]
-Get:5 http://debian.osuosl.org unstable/non-free Sources [96.8 kB]
-Get:6 http://debian.osuosl.org unstable/main powerpc Packages [5889 kB]
-Ign http://incoming.debian.org InRelease
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://debian.osuosl.org unstable/contrib powerpc Packages [37.0 kB]
-Get:9 http://debian.osuosl.org unstable/contrib Translation-en [36.6 kB]
-Get:10 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:11 http://debian.osuosl.org unstable/main Translation-en [3949 kB]
-Get:12 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:14 http://incoming.debian.org unstable/main powerpc Packages [5889 kB]
-Get:15 http://incoming.debian.org unstable/contrib powerpc Packages [37.0 kB]
-Get:16 http://incoming.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:17 http://incoming.debian.org unstable/main Translation-en [3949 kB]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org Sources [64.3 kB]
-Get:20 http://incoming.debian.org Packages [784 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 34.0 MB in 11s (2877 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (528 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.1)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-6)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-30)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 libmagic1 libpipeline1
- libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6 libxcb1
- libxdmcp6 libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 libmagic1 libperlio-gzip-perl
- libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6
- libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config po-debconf
- ttf-dejavu-core
-0 upgraded, 43 newly installed, 0 to remove and 48 not upgraded.
-Need to get 14.9 MB of archives.
-After this operation, 38.5 MB of additional disk space will be used.
-Get:1 http://debian.osuosl.org/debian/ unstable/main libpipeline1 powerpc 1.2.1-1 [38.5 kB]
-Get:2 http://debian.osuosl.org/debian/ unstable/main libpopt0 powerpc 1.16-5 [56.6 kB]
-Get:3 http://debian.osuosl.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-7 [26.8 kB]
-Get:4 http://debian.osuosl.org/debian/ unstable/main libmagic1 powerpc 5.11-1 [257 kB]
-Get:5 http://debian.osuosl.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-9 [843 kB]
-Get:6 http://debian.osuosl.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
-Get:7 http://debian.osuosl.org/debian/ unstable/main libglib2.0-0 powerpc 2.32.2-1 [2040 kB]
-Get:8 http://debian.osuosl.org/debian/ unstable/main libcroco3 powerpc 0.6.5-1 [143 kB]
-Get:9 http://debian.osuosl.org/debian/ unstable/main libexpat1 powerpc 2.1.0-1 [142 kB]
-Get:10 http://debian.osuosl.org/debian/ unstable/main libfreetype6 powerpc 2.4.9-1 [432 kB]
-Get:11 http://debian.osuosl.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:12 http://debian.osuosl.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:13 http://debian.osuosl.org/debian/ unstable/main libfontconfig1 powerpc 2.9.0-5 [297 kB]
-Get:14 http://debian.osuosl.org/debian/ unstable/main libjpeg8 powerpc 8d-1 [130 kB]
-Get:15 http://debian.osuosl.org/debian/ unstable/main libpng12-0 powerpc 1.2.49-1 [185 kB]
-Get:16 http://debian.osuosl.org/debian/ unstable/main libxau6 powerpc 1:1.0.7-1 [18.5 kB]
-Get:17 http://debian.osuosl.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.1-1 [25.9 kB]
-Get:18 http://debian.osuosl.org/debian/ unstable/main libxcb1 powerpc 1.8.1-1 [45.3 kB]
-Get:19 http://debian.osuosl.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:20 http://debian.osuosl.org/debian/ unstable/main libx11-6 powerpc 2:1.4.99.901-2 [875 kB]
-Get:21 http://debian.osuosl.org/debian/ unstable/main libxpm4 powerpc 1:3.5.10-1 [48.5 kB]
-Get:22 http://debian.osuosl.org/debian/ unstable/main libgd2-xpm powerpc 2.0.36~rc1~dfsg-6.1 [231 kB]
-Get:23 http://debian.osuosl.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
-Get:24 http://debian.osuosl.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-7 [137 kB]
-Get:25 http://debian.osuosl.org/debian/ unstable/main bsdmainutils powerpc 9.0.1 [208 kB]
-Get:26 http://debian.osuosl.org/debian/ unstable/main groff-base powerpc 1.21-7 [1179 kB]
-Get:27 http://debian.osuosl.org/debian/ unstable/main man-db powerpc 2.6.1-2 [1054 kB]
-Get:28 http://debian.osuosl.org/debian/ unstable/main file powerpc 5.11-1 [53.1 kB]
-Get:29 http://debian.osuosl.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-7 [130 kB]
-Get:30 http://debian.osuosl.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:31 http://debian.osuosl.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:32 http://debian.osuosl.org/debian/ unstable/main gettext powerpc 0.18.1.1-7 [1920 kB]
-Get:33 http://debian.osuosl.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:34 http://debian.osuosl.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:35 http://debian.osuosl.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:36 http://debian.osuosl.org/debian/ unstable/main help2man powerpc 1.40.9 [95.1 kB]
-Get:37 http://debian.osuosl.org/debian/ unstable/main libgtextutils0 powerpc 0.6.2-1 [21.2 kB]
-Get:38 http://debian.osuosl.org/debian/ unstable/main libgtextutils-dev powerpc 0.6.2-1 [25.6 kB]
-Get:39 http://debian.osuosl.org/debian/ unstable/main libperlio-gzip-perl powerpc 0.18-1+b3 [18.8 kB]
-Get:40 http://debian.osuosl.org/debian/ unstable/main pkg-config powerpc 0.26-1 [58.1 kB]
-Get:41 http://debian.osuosl.org/debian/ unstable/main libgd-gd2-perl powerpc 1:2.46-3+b1 [197 kB]
-Get:42 http://debian.osuosl.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:43 http://debian.osuosl.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 14.9 MB in 1s (7847 kB/s)
-Selecting previously unselected package libpipeline1:powerpc.
-(Reading database ... 10913 files and directories currently installed.)
-Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.1-1_powerpc.deb) ...
-Selecting previously unselected package libpopt0:powerpc.
-Unpacking libpopt0:powerpc (from .../libpopt0_1.16-5_powerpc.deb) ...
-Selecting previously unselected package libasprintf0c2:powerpc.
-Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-7_powerpc.deb) ...
-Selecting previously unselected package libmagic1:powerpc.
-Unpacking libmagic1:powerpc (from .../libmagic1_5.11-1_powerpc.deb) ...
-Selecting previously unselected package libxml2:powerpc.
-Unpacking libxml2:powerpc (from .../libxml2_2.7.8.dfsg-9_powerpc.deb) ...
-Selecting previously unselected package libffi5:powerpc.
-Unpacking libffi5:powerpc (from .../libffi5_3.0.10-3_powerpc.deb) ...
-Selecting previously unselected package libglib2.0-0:powerpc.
-Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.32.2-1_powerpc.deb) ...
-Selecting previously unselected package libcroco3:powerpc.
-Unpacking libcroco3:powerpc (from .../libcroco3_0.6.5-1_powerpc.deb) ...
-Selecting previously unselected package libexpat1:powerpc.
-Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-1_powerpc.deb) ...
-Selecting previously unselected package libfreetype6:powerpc.
-Unpacking libfreetype6:powerpc (from .../libfreetype6_2.4.9-1_powerpc.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:powerpc.
-Unpacking libfontconfig1:powerpc (from .../libfontconfig1_2.9.0-5_powerpc.deb) ...
-Selecting previously unselected package libjpeg8:powerpc.
-Unpacking libjpeg8:powerpc (from .../libjpeg8_8d-1_powerpc.deb) ...
-Selecting previously unselected package libpng12-0:powerpc.
-Unpacking libpng12-0:powerpc (from .../libpng12-0_1.2.49-1_powerpc.deb) ...
-Selecting previously unselected package libxau6:powerpc.
-Unpacking libxau6:powerpc (from .../libxau6_1%3a1.0.7-1_powerpc.deb) ...
-Selecting previously unselected package libxdmcp6:powerpc.
-Unpacking libxdmcp6:powerpc (from .../libxdmcp6_1%3a1.1.1-1_powerpc.deb) ...
-Selecting previously unselected package libxcb1:powerpc.
-Unpacking libxcb1:powerpc (from .../libxcb1_1.8.1-1_powerpc.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:powerpc.
-Unpacking libx11-6:powerpc (from .../libx11-6_2%3a1.4.99.901-2_powerpc.deb) ...
-Selecting previously unselected package libxpm4:powerpc.
-Unpacking libxpm4:powerpc (from .../libxpm4_1%3a3.5.10-1_powerpc.deb) ...
-Selecting previously unselected package libgd2-xpm:powerpc.
-Unpacking libgd2-xpm:powerpc (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_powerpc.deb) ...
-Selecting previously unselected package libunistring0:powerpc.
-Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5_powerpc.deb) ...
-Selecting previously unselected package libgettextpo0:powerpc.
-Unpacking libgettextpo0:powerpc (from .../libgettextpo0_0.18.1.1-7_powerpc.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_powerpc.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_powerpc.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_powerpc.deb) ...
-Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-1_powerpc.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_powerpc.deb) ...
-Selecting previously unselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
-Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_powerpc.deb) ...
-Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
-Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
-Selecting previously unselected package help2man.
-Unpacking help2man (from .../help2man_1.40.9_powerpc.deb) ...
-Selecting previously unselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_powerpc.deb) ...
-Selecting previously unselected package libgtextutils-dev.
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
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-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making all in fastx_quality_stats
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making all in fastq_quality_converter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making all in fastq_to_fasta
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
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-Making all in fastq_quality_filter
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
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-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/ma [...]
- gzip -9nf usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/ma [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/f [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_powerpc.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1237
-
-fastx-toolkit_0.0.13.2-1_powerpc.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: powerpc
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: powerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 22c337f6bde3d1a3c7a1b1c5b7330f95851e931d 131178 fastx-toolkit_0.0.13.2-1_powerpc.deb
-Checksums-Sha256:
- 2e0e1e54a28e08fe7c5da317f5be5cfc39256f76b974732df3617426491726d8 131178 fastx-toolkit_0.0.13.2-1_powerpc.deb
-Files:
- dc8e320989f7fe8bac0995eafe1202de 131178 science optional fastx-toolkit_0.0.13.2-1_powerpc.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_powerpc.deb
-────────────────────────────────────
-
- new debian package, version 2.0.
- size 131178 bytes: control archive= 2140 bytes.
- 1080 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: powerpc
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 452
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/bin/
--rwxr-xr-x root/root 18040 2012-05-15 12:37 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 18044 2012-05-15 12:37 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 2764 2012-05-15 12:37 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 18044 2012-05-15 12:37 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18048 2012-05-15 12:37 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 13925 2012-05-15 12:37 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 22168 2012-05-15 12:37 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 18044 2012-05-15 12:37 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 55268 2012-05-15 12:37 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 26468 2012-05-15 12:37 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 5896 2012-05-15 12:37 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 5380 2012-05-15 12:37 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 30624 2012-05-15 12:37 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 18040 2012-05-15 12:37 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 6069 2012-05-15 12:37 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 18196 2012-05-15 12:37 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 18036 2012-05-15 12:37 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 18044 2012-05-15 12:37 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 18036 2012-05-15 12:37 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 18040 2012-05-15 12:37 ./usr/bin/fastx_reverse_complement
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/share/man/man1/
--rw-r--r-- root/root 505 2012-05-15 12:37 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:37 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:37 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:37 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:37 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:37 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 613 2012-05-15 12:37 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 2213 2012-05-15 12:37 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:37 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:37 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:37 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:37 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:37 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:37 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:37 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:37 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:37 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:37 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:37 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:37 ./usr/share/man/man1/fasta_formatter.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:37 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
-lrwxrwxrwx root/root 0 2012-05-15 12:37 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-00f2a477-3d67-497d-a9ac-f03b59d47606/build/buildd-fastx-toolkit_0.0.13.2-1-powerpc-W1dMKG
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: powerpc
-Build-Space: 9028
-Build-Time: 28
-Distribution: sid
-Install-Time: 101
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 152
-Source-Version: 0.0.13.2-1
-Space: 9028
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1237
-Build needed 00:02:32, 9028k disc space
-Signature with key '9811BFE6' requested:
-
diff --git a/s390.log b/s390.log
deleted file mode 100644
index d2c813d..0000000
--- a/s390.log
+++ /dev/null
@@ -1,2989 +0,0 @@
-From buildd at zandonai.debian.org Tue May 15 12:38:35 2012
-Return-path: <buildd at zandonai.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1SUH1P-000734-IY
- for logs at buildd.debian.org; Tue, 15 May 2012 12:38:35 +0000
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- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
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- EMAIL=hostmaster at zandonai.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
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- id 1SUH1O-0005SB-66; Tue, 15 May 2012 12:38:34 +0000
-Message-Id: <E1SUH1O-0005SB-66 at zandonai.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 12:38:34 +0000
-From: buildd on zandonai <buildd at zandonai.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on s390
- (dist=sid)
-Key-Id: E7C67939
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (s390) 15 May 2012 12:36 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: s390
-Get:1 http://ftp.de.debian.org unstable InRelease [234 kB]
-Get:2 http://incoming.debian.org unstable InRelease [234 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6293 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [54.7 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [96.8 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [5796 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [36.7 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2295 B]
-Get:11 http://ftp.de.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:12 http://ftp.de.debian.org unstable/main Translation-en [3949 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:15 http://incoming.debian.org unstable/main s390 Packages [5796 kB]
-Get:16 http://incoming.debian.org unstable/contrib s390 Packages [36.7 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3949 kB]
-Get:21 http://incoming.debian.org Sources [64.3 kB]
-Get:22 http://incoming.debian.org Packages [784 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 45s (744 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (363 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-base-files: already installed (6.7)
-base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-5)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-5)
-ncurses-bin: already installed (5.9-5)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 liblocale-gettext-perl
- libmagic1 libpcre3 libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf
- ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 liblocale-gettext-perl libmagic1
- libpcre3 libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0
- libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db
- pkg-config po-debconf ttf-dejavu-core
-0 upgraded, 45 newly installed, 0 to remove and 59 not upgraded.
-Need to get 15.4 MB of archives.
-After this operation, 39.3 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.1-1 [40.0 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpopt0 s390 1.16-5 [59.1 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main liblocale-gettext-perl s390 1.05-7+b1 [20.0 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-7 [26.4 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.11-1 [260 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 1:8.30-5 [248 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-9 [882 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390 3.0.10-3 [25.3 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.32.2-1 [2121 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.5-1 [150 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.1.0-1 [140 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.9-1 [449 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.9.0-5 [302 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8d-1 [141 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.49-1 [191 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.7-1 [18.6 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.1-1 [26.6 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.8.1-1 [53.2 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.99.901-2 [902 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxpm4 s390 1:3.5.10-1 [50.4 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libgd2-xpm s390 2.0.36~rc1~dfsg-6.1 [231 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-7 [146 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.1 [213 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-7 [1145 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.1-2 [1068 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main file s390 5.11-1 [53.7 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-7 [141 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-7 [1950 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main help2man s390 1.40.9 [95.0 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libgtextutils0 s390 0.6.2-1 [21.4 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libgtextutils-dev s390 0.6.2-1 [25.9 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libperlio-gzip-perl s390 0.18-1+b2 [19.0 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main pkg-config s390 0.26-1 [59.5 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libgd-gd2-perl s390 1:2.46-3+b1 [191 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 15.4 MB in 12s (1237 kB/s)
-Selecting previously unselected package libpipeline1:s390.
-(Reading database ... 10731 files and directories currently installed.)
-Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.1-1_s390.deb) ...
-Selecting previously unselected package libpopt0:s390.
-Unpacking libpopt0:s390 (from .../libpopt0_1.16-5_s390.deb) ...
-Selecting previously unselected package liblocale-gettext-perl.
-Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_s390.deb) ...
-Selecting previously unselected package libasprintf0c2:s390.
-Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-7_s390.deb) ...
-Selecting previously unselected package libmagic1:s390.
-Unpacking libmagic1:s390 (from .../libmagic1_5.11-1_s390.deb) ...
-Selecting previously unselected package libpcre3:s390.
-Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.30-5_s390.deb) ...
-Selecting previously unselected package libxml2:s390.
-Unpacking libxml2:s390 (from .../libxml2_2.7.8.dfsg-9_s390.deb) ...
-Selecting previously unselected package libffi5:s390.
-Unpacking libffi5:s390 (from .../libffi5_3.0.10-3_s390.deb) ...
-Selecting previously unselected package libglib2.0-0:s390.
-Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.32.2-1_s390.deb) ...
-Selecting previously unselected package libcroco3:s390.
-Unpacking libcroco3:s390 (from .../libcroco3_0.6.5-1_s390.deb) ...
-Selecting previously unselected package libexpat1:s390.
-Unpacking libexpat1:s390 (from .../libexpat1_2.1.0-1_s390.deb) ...
-Selecting previously unselected package libfreetype6:s390.
-Unpacking libfreetype6:s390 (from .../libfreetype6_2.4.9-1_s390.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:s390.
-Unpacking libfontconfig1:s390 (from .../libfontconfig1_2.9.0-5_s390.deb) ...
-Selecting previously unselected package libjpeg8:s390.
-Unpacking libjpeg8:s390 (from .../libjpeg8_8d-1_s390.deb) ...
-Selecting previously unselected package libpng12-0:s390.
-Unpacking libpng12-0:s390 (from .../libpng12-0_1.2.49-1_s390.deb) ...
-Selecting previously unselected package libxau6:s390.
-Unpacking libxau6:s390 (from .../libxau6_1%3a1.0.7-1_s390.deb) ...
-Selecting previously unselected package libxdmcp6:s390.
-Unpacking libxdmcp6:s390 (from .../libxdmcp6_1%3a1.1.1-1_s390.deb) ...
-Selecting previously unselected package libxcb1:s390.
-Unpacking libxcb1:s390 (from .../libxcb1_1.8.1-1_s390.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:s390.
-Unpacking libx11-6:s390 (from .../libx11-6_2%3a1.4.99.901-2_s390.deb) ...
-Selecting previously unselected package libxpm4:s390.
-Unpacking libxpm4:s390 (from .../libxpm4_1%3a3.5.10-1_s390.deb) ...
-Selecting previously unselected package libgd2-xpm:s390.
-Unpacking libgd2-xpm:s390 (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_s390.deb) ...
-Selecting previously unselected package libunistring0:s390.
-Unpacking libunistring0:s390 (from .../libunistring0_0.9.3-5_s390.deb) ...
-Selecting previously unselected package libgettextpo0:s390.
-Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-7_s390.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_s390.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_s390.deb) ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_s390.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_s390.deb) ...
-Selecting previously unselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
-Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_s390.deb) ...
-Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
-Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
-Selecting previously unselected package help2man.
-Unpacking help2man (from .../help2man_1.40.9_s390.deb) ...
-Selecting previously unselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_s390.deb) ...
-Selecting previously unselected package libgtextutils-dev.
-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_s390.deb) ...
-Selecting previously unselected package libperlio-gzip-perl.
-Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1+b2_s390.deb) ...
-Selecting previously unselected package pkg-config.
-Unpacking pkg-config (from .../pkg-config_0.26-1_s390.deb) ...
-Selecting previously unselected package libgd-gd2-perl.
-Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3+b1_s390.deb) ...
-Selecting previously unselected package libgd-text-perl.
-Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ...
-Selecting previously unselected package libgd-graph-perl.
-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
-Setting up libpipeline1:s390 (1.2.1-1) ...
-Setting up libpopt0:s390 (1.16-5) ...
-Setting up liblocale-gettext-perl (1.05-7+b1) ...
-Setting up libasprintf0c2:s390 (0.18.1.1-7) ...
-Setting up libmagic1:s390 (5.11-1) ...
-Setting up libpcre3:s390 (1:8.30-5) ...
-Setting up libxml2:s390 (2.7.8.dfsg-9) ...
-Setting up libffi5:s390 (3.0.10-3) ...
-Setting up libglib2.0-0:s390 (2.32.2-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390 (0.6.5-1) ...
-Setting up libexpat1:s390 (2.1.0-1) ...
-Setting up libfreetype6:s390 (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1:s390 (2.9.0-5) ...
-Setting up libjpeg8:s390 (8d-1) ...
-Setting up libpng12-0:s390 (1.2.49-1) ...
-Setting up libxau6:s390 (1:1.0.7-1) ...
-Setting up libxdmcp6:s390 (1:1.1.1-1) ...
-Setting up libxcb1:s390 (1.8.1-1) ...
-Setting up libx11-data (2:1.4.99.901-2) ...
-Setting up libx11-6:s390 (2:1.4.99.901-2) ...
-Setting up libxpm4:s390 (1:3.5.10-1) ...
-Setting up libgd2-xpm:s390 (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0:s390 (0.9.3-5) ...
-Setting up libgettextpo0:s390 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up libperlio-gzip-perl (0.18-1+b2) ...
-Setting up pkg-config (0.26-1) ...
-Setting up libgd-gd2-perl (1:2.46-3+b1) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.7.0-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-3 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 fon [...]
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture s390
- fakeroot debian/rules clean
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-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-Making all in m4
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/m4'
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-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-Making all in libfastx
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c
-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
-rm -f libfastx.a
-ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
-ranlib libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making all in fastx_clipper
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making all in fastx_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making all in fastx_quality_stats
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making all in fastq_quality_converter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making all in fastq_to_fasta
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making all in fastq_quality_filter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making all in fastq_quality_trimmer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making all in fastx_artifacts_filter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making all in fastx_reverse_complement
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making all in fastx_collapser
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making all in fastx_uncollapser
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making all in seqalign_test
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making all in fasta_formatter
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making all in fasta_nucleotide_changer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
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-Making all in doc
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-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
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-Making all in fastx_toolkit
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-Making all in cshl_custom_fastx_toolkit
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-Making all in test-data
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-Making all in static
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-Making all in fastx_icons
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-Making all in tool-data
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-Making all in scripts
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-Making all in build_scripts
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- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-Making check in m4
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-Making check in src
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-Making check in libfastx
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-Making check in fastx_clipper
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-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_ [...]
- gzip -9nf usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_ [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx- [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_s390.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_s390.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1238
-
-fastx-toolkit_0.0.13.2-1_s390.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: s390
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- cb7df2c1329df5ed25af5b3b61f6b5e15752f91a 128804 fastx-toolkit_0.0.13.2-1_s390.deb
-Checksums-Sha256:
- 6fd737c5b11be9ab007ccedc2a3ba4088e5fa5d6913afdbc60535a455a663af2 128804 fastx-toolkit_0.0.13.2-1_s390.deb
-Files:
- f0e8a2ff902d01c1ba8514997209e56e 128804 science optional fastx-toolkit_0.0.13.2-1_s390.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_s390.deb
-─────────────────────────────────
-
- new debian package, version 2.0.
- size 128804 bytes: control archive= 2146 bytes.
- 1077 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: s390
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 449
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/bin/
--rwxr-xr-x root/root 17832 2012-05-15 12:38 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 17828 2012-05-15 12:38 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 17824 2012-05-15 12:38 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 17820 2012-05-15 12:38 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 17828 2012-05-15 12:38 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 17828 2012-05-15 12:38 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 17820 2012-05-15 12:38 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 17976 2012-05-15 12:38 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 6069 2012-05-15 12:38 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 21948 2012-05-15 12:38 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 17828 2012-05-15 12:38 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 13925 2012-05-15 12:38 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 30408 2012-05-15 12:38 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 17824 2012-05-15 12:38 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5896 2012-05-15 12:38 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 17824 2012-05-15 12:38 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 5380 2012-05-15 12:38 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 12:38 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 26244 2012-05-15 12:38 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 55036 2012-05-15 12:38 ./usr/bin/fastx_clipper
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/share/man/man1/
--rw-r--r-- root/root 659 2012-05-15 12:38 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:38 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:38 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:38 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:38 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:38 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:38 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:38 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:38 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:38 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:38 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:38 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:38 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:38 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:38 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:38 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:38 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 613 2012-05-15 12:38 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:38 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 2210 2012-05-15 12:38 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:38 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
-lrwxrwxrwx root/root 0 2012-05-15 12:38 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-s390-sbuild-0065f503-5d87-4974-b826-fbc9d905746a/build/buildd-fastx-toolkit_0.0.13.2-1-s390-eStLdD
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: s390
-Build-Space: 9268
-Build-Time: 44
-Distribution: sid
-Install-Time: 27
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 135
-Source-Version: 0.0.13.2-1
-Space: 9268
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1238
-Build needed 00:02:15, 9268k disc space
-Signature with key 'E7C67939' requested:
-From buildd at zemlinsky.debian.org Tue May 15 12:37:03 2012
-Return-path: <buildd at zemlinsky.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zemlinsky.debian.org>)
- id 1SUGzu-0006pf-Pq
- for logs at buildd.debian.org; Tue, 15 May 2012 12:37:03 +0000
-Received: from zemlinsky.debian.org ([2001:7c0:400:1337::818f:a006])
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- CN=zemlinsky.debian.org,
- EMAIL=hostmaster at zemlinsky.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
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- (envelope-from <buildd at zemlinsky.debian.org>)
- id 1SUGzt-0005x2-Fz; Tue, 15 May 2012 12:37:01 +0000
-Message-Id: <E1SUGzt-0005x2-Fz at zemlinsky.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 12:37:01 +0000
-From: buildd on zemlinsky <buildd at zemlinsky.debian.org>
-To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on s390x
- (dist=sid)
-Key-Id: 6A3F7E2B
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zemlinsky.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (s390x) 15 May 2012 12:35 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: s390x
-Get:1 http://ftp-stud.hs-esslingen.de unstable InRelease [234 kB]
-Get:2 http://ftp-stud.hs-esslingen.de unstable/main Sources [6293 kB]
-Hit http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Get:3 http://incoming.debian.org Release.gpg [836 B]
-Get:4 http://ftp-stud.hs-esslingen.de unstable/contrib Sources [54.7 kB]
-Get:5 http://ftp-stud.hs-esslingen.de unstable/non-free Sources [96.8 kB]
-Hit http://incoming.debian.org unstable/main Sources
-Hit http://incoming.debian.org unstable/contrib Sources
-Get:6 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:7 http://ftp-stud.hs-esslingen.de unstable/main s390x Packages [5728 kB]
-Get:8 http://ftp-stud.hs-esslingen.de unstable/contrib s390x Packages [36.2 kB]
-Ign http://ftp-stud.hs-esslingen.de unstable/contrib TranslationIndex
-Get:9 http://ftp-stud.hs-esslingen.de unstable/main TranslationIndex [2295 B]
-Get:10 http://ftp-stud.hs-esslingen.de unstable/contrib Translation-en [36.6 kB]
-Get:11 http://ftp-stud.hs-esslingen.de unstable/main Translation-en [3949 kB]
-Hit http://incoming.debian.org unstable/main s390x Packages
-Hit http://incoming.debian.org unstable/contrib s390x Packages
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Hit http://incoming.debian.org unstable/main TranslationIndex
-Get:12 http://incoming.debian.org Release [1601 B]
-Hit http://incoming.debian.org unstable/contrib Translation-en
-Hit http://incoming.debian.org unstable/main Translation-en
-Get:13 http://incoming.debian.org Sources [64.3 kB]
-Get:14 http://incoming.debian.org Packages [784 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 17.4 MB in 5s (2964 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (489 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1+b1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 libmagic1 libpcre3
- libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6
- libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 libmagic1 libpcre3
- libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-0 upgraded, 44 newly installed, 0 to remove and 60 not upgraded.
-Need to get 15.7 MB of archives.
-After this operation, 40.9 MB of additional disk space will be used.
-Get:1 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:2 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpopt0 s390x 1.16-5 [58.0 kB]
-Get:3 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-7 [26.6 kB]
-Get:4 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:5 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
-Get:6 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-9 [895 kB]
-Get:7 http://incoming.debian.org/buildd-unstable/ libglib2.0-0 2.32.2-1+b1 [2104 kB]
-Get:8 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:9 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:10 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:11 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libfreetype6 s390x 2.4.9-1 [465 kB]
-Get:12 http://ftp-stud.hs-esslingen.de/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:13 http://ftp-stud.hs-esslingen.de/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:14 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libfontconfig1 s390x 2.9.0-5 [302 kB]
-Get:15 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
-Get:16 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpng12-0 s390x 1.2.49-1 [193 kB]
-Get:17 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
-Get:18 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
-Get:19 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxcb1 s390x 1.8.1-1 [52.7 kB]
-Get:20 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:21 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libx11-6 s390x 2:1.4.99.901-2 [915 kB]
-Get:22 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxpm4 s390x 1:3.5.10-1 [51.8 kB]
-Get:23 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd2-xpm s390x 2.0.36~rc1~dfsg-6.1 [237 kB]
-Get:24 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:25 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-7 [157 kB]
-Get:26 http://ftp-stud.hs-esslingen.de/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:27 http://ftp-stud.hs-esslingen.de/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:28 http://ftp-stud.hs-esslingen.de/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:29 http://ftp-stud.hs-esslingen.de/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:30 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext-base s390x 0.18.1.1-7 [155 kB]
-Get:31 http://ftp-stud.hs-esslingen.de/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:32 http://ftp-stud.hs-esslingen.de/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:33 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext s390x 0.18.1.1-7 [2030 kB]
-Get:34 http://ftp-stud.hs-esslingen.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:35 http://ftp-stud.hs-esslingen.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:36 http://ftp-stud.hs-esslingen.de/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:37 http://ftp-stud.hs-esslingen.de/debian/ unstable/main help2man s390x 1.40.9 [95.0 kB]
-Get:38 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgtextutils0 s390x 0.6.2-1 [21.5 kB]
-Get:39 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgtextutils-dev s390x 0.6.2-1 [25.6 kB]
-Get:40 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libperlio-gzip-perl s390x 0.18-1 [18.8 kB]
-Get:41 http://ftp-stud.hs-esslingen.de/debian/ unstable/main pkg-config s390x 0.26-1+b1 [59.5 kB]
-Get:42 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-gd2-perl s390x 1:2.46-3 [204 kB]
-Get:43 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:44 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 15.7 MB in 1s (8155 kB/s)
-Selecting previously unselected package libpipeline1:s390x.
-(Reading database ... 10853 files and directories currently installed.)
-Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.1-1_s390x.deb) ...
-Selecting previously unselected package libpopt0:s390x.
-Unpacking libpopt0:s390x (from .../libpopt0_1.16-5_s390x.deb) ...
-Selecting previously unselected package libasprintf0c2:s390x.
-Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-7_s390x.deb) ...
-Selecting previously unselected package libmagic1:s390x.
-Unpacking libmagic1:s390x (from .../libmagic1_5.11-1_s390x.deb) ...
-Selecting previously unselected package libpcre3:s390x.
-Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.30-5_s390x.deb) ...
-Selecting previously unselected package libxml2:s390x.
-Unpacking libxml2:s390x (from .../libxml2_2.7.8.dfsg-9_s390x.deb) ...
-Selecting previously unselected package libffi5:s390x.
-Unpacking libffi5:s390x (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
-Selecting previously unselected package libglib2.0-0:s390x.
-Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.32.2-1+b1_s390x.deb) ...
-Selecting previously unselected package libcroco3:s390x.
-Unpacking libcroco3:s390x (from .../libcroco3_0.6.5-1_s390x.deb) ...
-Selecting previously unselected package libexpat1:s390x.
-Unpacking libexpat1:s390x (from .../libexpat1_2.1.0-1_s390x.deb) ...
-Selecting previously unselected package libfreetype6:s390x.
-Unpacking libfreetype6:s390x (from .../libfreetype6_2.4.9-1_s390x.deb) ...
-Selecting previously unselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
-Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-5_all.deb) ...
-Selecting previously unselected package libfontconfig1:s390x.
-Unpacking libfontconfig1:s390x (from .../libfontconfig1_2.9.0-5_s390x.deb) ...
-Selecting previously unselected package libjpeg8:s390x.
-Unpacking libjpeg8:s390x (from .../libjpeg8_8d-1_s390x.deb) ...
-Selecting previously unselected package libpng12-0:s390x.
-Unpacking libpng12-0:s390x (from .../libpng12-0_1.2.49-1_s390x.deb) ...
-Selecting previously unselected package libxau6:s390x.
-Unpacking libxau6:s390x (from .../libxau6_1%3a1.0.7-1_s390x.deb) ...
-Selecting previously unselected package libxdmcp6:s390x.
-Unpacking libxdmcp6:s390x (from .../libxdmcp6_1%3a1.1.1-1_s390x.deb) ...
-Selecting previously unselected package libxcb1:s390x.
-Unpacking libxcb1:s390x (from .../libxcb1_1.8.1-1_s390x.deb) ...
-Selecting previously unselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-2_all.deb) ...
-Selecting previously unselected package libx11-6:s390x.
-Unpacking libx11-6:s390x (from .../libx11-6_2%3a1.4.99.901-2_s390x.deb) ...
-Selecting previously unselected package libxpm4:s390x.
-Unpacking libxpm4:s390x (from .../libxpm4_1%3a3.5.10-1_s390x.deb) ...
-Selecting previously unselected package libgd2-xpm:s390x.
-Unpacking libgd2-xpm:s390x (from .../libgd2-xpm_2.0.36~rc1~dfsg-6.1_s390x.deb) ...
-Selecting previously unselected package libunistring0:s390x.
-Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
-Selecting previously unselected package libgettextpo0:s390x.
-Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-7_s390x.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390x.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-7_s390x.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_s390x.deb) ...
-Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-1_s390x.deb) ...
-Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_s390x.deb) ...
-Selecting previously unselected package autotools-dev.
-Unpacking autotools-dev (from .../autotools-dev_20120210.1_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
-Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_s390x.deb) ...
-Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
-Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120513_all.deb) ...
-Selecting previously unselected package help2man.
-Unpacking help2man (from .../help2man_1.40.9_s390x.deb) ...
-Selecting previously unselected package libgtextutils0.
-Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_s390x.deb) ...
-Selecting previously unselected package libgtextutils-dev.
-Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_s390x.deb) ...
-Selecting previously unselected package libperlio-gzip-perl.
-Unpacking libperlio-gzip-perl (from .../libperlio-gzip-perl_0.18-1_s390x.deb) ...
-Selecting previously unselected package pkg-config.
-Unpacking pkg-config (from .../pkg-config_0.26-1+b1_s390x.deb) ...
-Selecting previously unselected package libgd-gd2-perl.
-Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3_s390x.deb) ...
-Selecting previously unselected package libgd-text-perl.
-Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ...
-Selecting previously unselected package libgd-graph-perl.
-Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ...
-Setting up libpipeline1:s390x (1.2.1-1) ...
-Setting up libpopt0:s390x (1.16-5) ...
-Setting up libasprintf0c2:s390x (0.18.1.1-7) ...
-Setting up libmagic1:s390x (5.11-1) ...
-Setting up libpcre3:s390x (1:8.30-5) ...
-Setting up libxml2:s390x (2.7.8.dfsg-9) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.2-1+b1) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390x (0.6.5-1) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libfreetype6:s390x (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1:s390x (2.9.0-5) ...
-Setting up libjpeg8:s390x (8d-1) ...
-Setting up libpng12-0:s390x (1.2.49-1) ...
-Setting up libxau6:s390x (1:1.0.7-1) ...
-Setting up libxdmcp6:s390x (1:1.1.1-1) ...
-Setting up libxcb1:s390x (1.8.1-1) ...
-Setting up libx11-data (2:1.4.99.901-2) ...
-Setting up libx11-6:s390x (2:1.4.99.901-2) ...
-Setting up libxpm4:s390x (1:3.5.10-1) ...
-Setting up libgd2-xpm:s390x (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up libperlio-gzip-perl (0.18-1) ...
-Setting up pkg-config (0.26-1+b1) ...
-Setting up libgd-gd2-perl (1:2.46-3) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.7.0-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-3 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5. [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture s390x
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... no
-checking for mawk... mawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... gcc
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
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-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c
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-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
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-Making all in fastx_uncollapser
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a
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-Making all in seqalign_test
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
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-Making all in fasta_formatter
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
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-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
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-Making all in fasta_nucleotide_changer
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
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-Making all in fastx_renamer
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
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-Making all in fastq_masker
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
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-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
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-Making all in galaxy
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-Making all in tools
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- dh_auto_test -a
- make -j1 check
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-Making check in m4
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-Making check in src
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-Making check in libfastx
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-Making check in fastx_trimmer
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-Making check in fastq_quality_converter
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-Making check in fastq_to_fasta
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-Making check in fastq_quality_filter
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-Making check in fastq_quality_trimmer
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-Making check in fastx_artifacts_filter
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-Making check in fastx_reverse_complement
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1 [...]
- gzip -9nf usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1 [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_s390x.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1236
-
-fastx-toolkit_0.0.13.2-1_s390x.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: s390x
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: s390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 38b1acee4a16846e8a63cb5d919522bbfa42e8f6 143448 fastx-toolkit_0.0.13.2-1_s390x.deb
-Checksums-Sha256:
- 88c8f3fe9393e4b80b3a7f1b8e2367e68b0144f8b11b0b767f2dc436e9d49db1 143448 fastx-toolkit_0.0.13.2-1_s390x.deb
-Files:
- 47a83735155ecf41d083c7690d12a06f 143448 science optional fastx-toolkit_0.0.13.2-1_s390x.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_s390x.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 143448 bytes: control archive= 2142 bytes.
- 1079 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: s390x
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 481
- Depends: libc6 (>= 2.13), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/man/man1/
--rw-r--r-- root/root 613 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:36 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:36 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:36 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 2211 2012-05-15 12:36 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:36 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:36 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:36 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:36 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:36 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:36 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:36 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:36 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:36 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:36 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:36 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:36 ./usr/share/man/man1/fastx_clipper.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/bin/
--rwxr-xr-x root/root 18632 2012-05-15 12:36 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 13925 2012-05-15 12:36 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 5380 2012-05-15 12:36 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5896 2012-05-15 12:36 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 26864 2012-05-15 12:36 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 18608 2012-05-15 12:36 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 18608 2012-05-15 12:36 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 35528 2012-05-15 12:36 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 6069 2012-05-15 12:36 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 12:36 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 64200 2012-05-15 12:36 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 31296 2012-05-15 12:36 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 18856 2012-05-15 12:36 ./usr/bin/fasta_formatter
-lrwxrwxrwx root/root 0 2012-05-15 12:36 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-18d4cf0b-1302-46c1-98d9-093d3371a9c3/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: s390x
-Build-Space: 10792
-Build-Time: 30
-Distribution: sid
-Install-Time: 22
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 65
-Source-Version: 0.0.13.2-1
-Space: 10792
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1236
-Build needed 00:01:05, 10792k disc space
-Signature with key '6A3F7E2B' requested:
diff --git a/s390x.log b/s390x.log
deleted file mode 100644
index c5e31a9..0000000
--- a/s390x.log
+++ /dev/null
@@ -1,1479 +0,0 @@
-From buildd at zemlinsky.debian.org Tue May 15 12:37:03 2012
-Return-path: <buildd at zemlinsky.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zemlinsky.debian.org>)
- id 1SUGzu-0006pf-Pq
- for logs at buildd.debian.org; Tue, 15 May 2012 12:37:03 +0000
-Received: from zemlinsky.debian.org ([2001:7c0:400:1337::818f:a006])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=zemlinsky.debian.org,
- EMAIL=hostmaster at zemlinsky.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zemlinsky.debian.org>)
- id 1SUGzt-0002pv-Om; Tue, 15 May 2012 12:37:01 +0000
-Received: from buildd by zemlinsky.debian.org with local (Exim 4.72)
- (envelope-from <buildd at zemlinsky.debian.org>)
- id 1SUGzt-0005x2-Fz; Tue, 15 May 2012 12:37:01 +0000
-Message-Id: <E1SUGzt-0005x2-Fz at zemlinsky.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 12:37:01 +0000
-From: buildd on zemlinsky <buildd at zemlinsky.debian.org>
-To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on s390x
- (dist=sid)
-Key-Id: 6A3F7E2B
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zemlinsky.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (s390x) 15 May 2012 12:35 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: s390x
-Get:1 http://ftp-stud.hs-esslingen.de unstable InRelease [234 kB]
-Get:2 http://ftp-stud.hs-esslingen.de unstable/main Sources [6293 kB]
-Hit http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Get:3 http://incoming.debian.org Release.gpg [836 B]
-Get:4 http://ftp-stud.hs-esslingen.de unstable/contrib Sources [54.7 kB]
-Get:5 http://ftp-stud.hs-esslingen.de unstable/non-free Sources [96.8 kB]
-Hit http://incoming.debian.org unstable/main Sources
-Hit http://incoming.debian.org unstable/contrib Sources
-Get:6 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:7 http://ftp-stud.hs-esslingen.de unstable/main s390x Packages [5728 kB]
-Get:8 http://ftp-stud.hs-esslingen.de unstable/contrib s390x Packages [36.2 kB]
-Ign http://ftp-stud.hs-esslingen.de unstable/contrib TranslationIndex
-Get:9 http://ftp-stud.hs-esslingen.de unstable/main TranslationIndex [2295 B]
-Get:10 http://ftp-stud.hs-esslingen.de unstable/contrib Translation-en [36.6 kB]
-Get:11 http://ftp-stud.hs-esslingen.de unstable/main Translation-en [3949 kB]
-Hit http://incoming.debian.org unstable/main s390x Packages
-Hit http://incoming.debian.org unstable/contrib s390x Packages
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Hit http://incoming.debian.org unstable/main TranslationIndex
-Get:12 http://incoming.debian.org Release [1601 B]
-Hit http://incoming.debian.org unstable/contrib Translation-en
-Hit http://incoming.debian.org unstable/main Translation-en
-Get:13 http://incoming.debian.org Sources [64.3 kB]
-Get:14 http://incoming.debian.org Packages [784 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 17.4 MB in 5s (2964 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/fastx-toolkit.git
-Need to get 564 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (dsc) [2148 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (tar) [545 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 1s (489 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.2-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1+b1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
-debhelper: missing
-Using default version 9.20120513
-autotools-dev: missing
-pkg-config: missing
-libgtextutils-dev: missing
-help2man: missing
-libgd-graph-perl: missing
-libperlio-gzip-perl: missing
-Checking for dependency conflicts...
-Installing positive dependencies: debhelper autotools-dev pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file fontconfig-config gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd2-xpm
- libgettextpo0 libglib2.0-0 libgtextutils0 libjpeg8 libmagic1 libpcre3
- libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6 libx11-data libxau6
- libxcb1 libxdmcp6 libxml2 libxpm4 man-db po-debconf ttf-dejavu-core
-Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin
- libgd-tools less www-browser libmail-box-perl
-Recommended packages:
- curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
- libmail-sendmail-perl
-The following NEW packages will be installed:
- autotools-dev bsdmainutils debhelper file fontconfig-config gettext
- gettext-base groff-base help2man html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libffi5 libfontconfig1 libfreetype6 libgd-gd2-perl
- libgd-graph-perl libgd-text-perl libgd2-xpm libgettextpo0 libglib2.0-0
- libgtextutils-dev libgtextutils0 libjpeg8 libmagic1 libpcre3
- libperlio-gzip-perl libpipeline1 libpng12-0 libpopt0 libunistring0 libx11-6
- libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 man-db pkg-config
- po-debconf ttf-dejavu-core
-0 upgraded, 44 newly installed, 0 to remove and 60 not upgraded.
-Need to get 15.7 MB of archives.
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-Get:1 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:2 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpopt0 s390x 1.16-5 [58.0 kB]
-Get:3 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-7 [26.6 kB]
-Get:4 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:5 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
-Get:6 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-9 [895 kB]
-Get:7 http://incoming.debian.org/buildd-unstable/ libglib2.0-0 2.32.2-1+b1 [2104 kB]
-Get:8 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:9 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:10 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:11 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libfreetype6 s390x 2.4.9-1 [465 kB]
-Get:12 http://ftp-stud.hs-esslingen.de/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:13 http://ftp-stud.hs-esslingen.de/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:14 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libfontconfig1 s390x 2.9.0-5 [302 kB]
-Get:15 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libjpeg8 s390x 8d-1 [190 kB]
-Get:16 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpng12-0 s390x 1.2.49-1 [193 kB]
-Get:17 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxau6 s390x 1:1.0.7-1 [18.6 kB]
-Get:18 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxdmcp6 s390x 1:1.1.1-1 [26.5 kB]
-Get:19 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxcb1 s390x 1.8.1-1 [52.7 kB]
-Get:20 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:21 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libx11-6 s390x 2:1.4.99.901-2 [915 kB]
-Get:22 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxpm4 s390x 1:3.5.10-1 [51.8 kB]
-Get:23 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd2-xpm s390x 2.0.36~rc1~dfsg-6.1 [237 kB]
-Get:24 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:25 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-7 [157 kB]
-Get:26 http://ftp-stud.hs-esslingen.de/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:27 http://ftp-stud.hs-esslingen.de/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:28 http://ftp-stud.hs-esslingen.de/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:29 http://ftp-stud.hs-esslingen.de/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:30 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext-base s390x 0.18.1.1-7 [155 kB]
-Get:31 http://ftp-stud.hs-esslingen.de/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:32 http://ftp-stud.hs-esslingen.de/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:33 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext s390x 0.18.1.1-7 [2030 kB]
-Get:34 http://ftp-stud.hs-esslingen.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:35 http://ftp-stud.hs-esslingen.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:36 http://ftp-stud.hs-esslingen.de/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:37 http://ftp-stud.hs-esslingen.de/debian/ unstable/main help2man s390x 1.40.9 [95.0 kB]
-Get:38 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgtextutils0 s390x 0.6.2-1 [21.5 kB]
-Get:39 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgtextutils-dev s390x 0.6.2-1 [25.6 kB]
-Get:40 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libperlio-gzip-perl s390x 0.18-1 [18.8 kB]
-Get:41 http://ftp-stud.hs-esslingen.de/debian/ unstable/main pkg-config s390x 0.26-1+b1 [59.5 kB]
-Get:42 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-gd2-perl s390x 1:2.46-3 [204 kB]
-Get:43 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:44 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
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-Selecting previously unselected package libpipeline1:s390x.
-(Reading database ... 10853 files and directories currently installed.)
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-Setting up libpipeline1:s390x (1.2.1-1) ...
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-Setting up libpcre3:s390x (1:8.30-5) ...
-Setting up libxml2:s390x (2.7.8.dfsg-9) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.2-1+b1) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390x (0.6.5-1) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libfreetype6:s390x (2.4.9-1) ...
-Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.9.0-5) ...
-Setting up libfontconfig1:s390x (2.9.0-5) ...
-Setting up libjpeg8:s390x (8d-1) ...
-Setting up libpng12-0:s390x (1.2.49-1) ...
-Setting up libxau6:s390x (1:1.0.7-1) ...
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-Setting up libxcb1:s390x (1.8.1-1) ...
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-Setting up libx11-6:s390x (2:1.4.99.901-2) ...
-Setting up libxpm4:s390x (1:3.5.10-1) ...
-Setting up libgd2-xpm:s390x (2.0.36~rc1~dfsg-6.1) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
-Building database of manual pages ...
-Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
-Setting up autotools-dev (20120210.1) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-7) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120513) ...
-Setting up help2man (1.40.9) ...
-Setting up libgtextutils0 (0.6.2-1) ...
-Setting up libgtextutils-dev (0.6.2-1) ...
-Setting up libperlio-gzip-perl (0.18-1) ...
-Setting up pkg-config (0.26-1+b1) ...
-Setting up libgd-gd2-perl (1:2.46-3) ...
-Setting up libgd-text-perl (0.86-8) ...
-Setting up libgd-graph-perl (1.44-6) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.7.0-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-3 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120513 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5. [...]
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Unpack source
-─────────────
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-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
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-Check disc space
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-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture s390x
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... no
-checking for mawk... mawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... gcc
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... s390x-ibm-linux-gnu
-checking host system type... s390x-ibm-linux-gnu
-checking for a sed that does not truncate output... /bin/sed
-checking for grep that handles long lines and -e... /bin/grep
-checking for egrep... /bin/grep -E
-checking for fgrep... /bin/grep -F
-checking for ld used by gcc... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... 3458764513820540925
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
-checking for strip... strip
-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
-checking for sys/types.h... yes
-checking for sys/stat.h... yes
-checking for stdlib.h... yes
-checking for string.h... yes
-checking for memory.h... yes
-checking for strings.h... yes
-checking for inttypes.h... yes
-checking for stdint.h... yes
-checking for unistd.h... yes
-checking for dlfcn.h... yes
-checking whether we are using the GNU C++ compiler... (cached) yes
-checking whether g++ accepts -g... (cached) yes
-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
-checking for gcc option to produce PIC... -fPIC -DPIC
-checking if gcc PIC flag -fPIC -DPIC works... yes
-checking if gcc static flag -static works... yes
-checking if gcc supports -c -o file.o... yes
-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
-checking if libtool supports shared libraries... yes
-checking whether to build shared libraries... yes
-checking whether to build static libraries... yes
-checking for ld used by g++... /usr/bin/ld -m elf64_s390
-checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes
-checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes
-checking for g++ option to produce PIC... -fPIC -DPIC
-checking if g++ PIC flag -fPIC -DPIC works... yes
-checking if g++ static flag -static works... yes
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-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
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-Making all in libfastx
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-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
-g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp
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-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making all in fasta_formatter
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-g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp
-/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making all in fasta_nucleotide_changer
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
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-Making all in fastx_renamer
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
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-Making all in doc
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-Making all in galaxy
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-Making all in tools
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-Making all in fastx_toolkit
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-Making all in cshl_custom_fastx_toolkit
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-Making all in test-data
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-Making all in static
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-Making all in fastx_icons
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-Making all in tool-data
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-Making all in scripts
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-Making all in build_scripts
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- dh_auto_test -a
- make -j1 check
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-Making check in m4
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-Making check in src
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-Making check in libfastx
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-Making check in fastx_clipper
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-Making check in fastx_trimmer
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-Making check in fastx_quality_stats
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-Making check in fastq_quality_converter
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-Making check in fastq_to_fasta
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-Making check in fastq_quality_filter
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-Making check in fastq_quality_trimmer
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-Making check in fastx_artifacts_filter
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-Making check in fastx_reverse_complement
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-Making check in fastx_collapser
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-Making check in fastx_uncollapser
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-Making check in seqalign_test
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-Making check in fasta_formatter
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-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
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-Making check in fastx_renamer
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-Making check in fastq_masker
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-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1 [...]
- gzip -9nf usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1 [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_quality_trimmer [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_s390x.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1236
-
-fastx-toolkit_0.0.13.2-1_s390x.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: s390x
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: s390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 38b1acee4a16846e8a63cb5d919522bbfa42e8f6 143448 fastx-toolkit_0.0.13.2-1_s390x.deb
-Checksums-Sha256:
- 88c8f3fe9393e4b80b3a7f1b8e2367e68b0144f8b11b0b767f2dc436e9d49db1 143448 fastx-toolkit_0.0.13.2-1_s390x.deb
-Files:
- 47a83735155ecf41d083c7690d12a06f 143448 science optional fastx-toolkit_0.0.13.2-1_s390x.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_s390x.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 143448 bytes: control archive= 2142 bytes.
- 1079 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: s390x
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 481
- Depends: libc6 (>= 2.13), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/share/man/man1/
--rw-r--r-- root/root 613 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:36 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:36 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:36 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 2211 2012-05-15 12:36 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:36 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:36 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:36 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:36 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:36 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:36 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:36 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:36 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:36 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:36 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:36 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:36 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 904 2012-05-15 12:36 ./usr/share/man/man1/fastx_clipper.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:36 ./usr/bin/
--rwxr-xr-x root/root 18632 2012-05-15 12:36 ./usr/bin/fastx_renamer
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 13925 2012-05-15 12:36 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 5380 2012-05-15 12:36 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 5896 2012-05-15 12:36 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 26864 2012-05-15 12:36 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 18608 2012-05-15 12:36 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 18608 2012-05-15 12:36 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 35528 2012-05-15 12:36 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 6069 2012-05-15 12:36 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 12:36 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 64200 2012-05-15 12:36 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 31296 2012-05-15 12:36 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 18616 2012-05-15 12:36 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 18624 2012-05-15 12:36 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 18856 2012-05-15 12:36 ./usr/bin/fasta_formatter
-lrwxrwxrwx root/root 0 2012-05-15 12:36 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-18d4cf0b-1302-46c1-98d9-093d3371a9c3/build/buildd-fastx-toolkit_0.0.13.2-1-s390x-CUNsla
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: s390x
-Build-Space: 10792
-Build-Time: 30
-Distribution: sid
-Install-Time: 22
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 65
-Source-Version: 0.0.13.2-1
-Space: 10792
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1236
-Build needed 00:01:05, 10792k disc space
-Signature with key '6A3F7E2B' requested:
diff --git a/sparc.log b/sparc.log
deleted file mode 100644
index 3030840..0000000
--- a/sparc.log
+++ /dev/null
@@ -1,1508 +0,0 @@
-From buildd at schroeder.debian.org Tue May 15 12:42:54 2012
-Return-path: <buildd at schroeder.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1SUH5a-0007bX-Gv
- for logs at buildd.debian.org; Tue, 15 May 2012 12:42:54 +0000
-Received: from [2001:b68:ff:5:203:baff:fe5a:53a5] (helo=schroeder.debian.org)
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=schroeder.debian.org,
- EMAIL=hostmaster at schroeder.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1SUH5Z-00032d-Gf
- for logs at buildd.debian.org; Tue, 15 May 2012 12:42:53 +0000
-Received: from buildd by schroeder.debian.org with local (Exim 4.72)
- (envelope-from <buildd at schroeder.debian.org>)
- id 1SUH5X-0002zJ-1d; Tue, 15 May 2012 12:42:51 +0000
-Message-Id: <E1SUH5X-0002zJ-1d at schroeder.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Tue, 15 May 2012 12:42:50 +0000
-From: buildd on schroeder <buildd at schroeder.debian.org>
-To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
-Subject: Log for successful build of fastx-toolkit_0.0.13.2-1 on sparc
- (dist=sid)
-Key-Id: 24E4F805
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ fastx-toolkit 0.0.13.2-1 (sparc) 15 May 2012 12:37 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: fastx-toolkit
-Version: 0.0.13.2-1
-Source Version: 0.0.13.2-1
-Architecture: sparc
-Get:1 http://ftp.hr.debian.org unstable InRelease [234 kB]
-Get:2 http://incoming.debian.org unstable InRelease [234 kB]
-Get:3 http://ftp.hr.debian.org unstable/main Sources [6293 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6293 kB]
-Get:7 http://ftp.hr.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.hr.debian.org unstable/non-free Sources [96.8 kB]
-Get:9 http://ftp.hr.debian.org unstable/main sparc Packages [5846 kB]
-Get:10 http://ftp.hr.debian.org unstable/contrib sparc Packages [36.6 kB]
-Get:11 http://ftp.hr.debian.org unstable/contrib Translation-en [36.6 kB]
-Get:12 http://ftp.hr.debian.org unstable/main Translation-en [3949 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.8 kB]
-Get:15 http://incoming.debian.org unstable/main sparc Packages [5846 kB]
-Get:16 http://incoming.debian.org unstable/contrib sparc Packages [36.6 kB]
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-Get:19 http://incoming.debian.org Sources [64.3 kB]
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-Ign http://incoming.debian.org Translation-en
-Fetched 33.9 MB in 1min 19s (426 kB/s)
-Reading package lists...
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'fastx-toolkit' packaging is maintained in the 'Git' version control system at:
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-Need to get 564 kB of source archives.
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-Get:3 http://incoming.debian.org/buildd-unstable/ fastx-toolkit 0.0.13.2-1 (diff) [16.9 kB]
-Fetched 564 kB in 2s (208 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install fastx-toolkit build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl
-Checking for already installed dependencies...
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-bash: already installed (4.2-2)
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-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
-findutils: already installed (4.4.2-4)
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-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
-libc6-dev-sparc64: already installed (2.13-32)
-gcc: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
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-autotools-dev: missing
-pkg-config: missing
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-help2man: missing
-libgd-graph-perl: missing
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-Checking for dependency conflicts...
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-Reading state information...
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- libgd-tools less www-browser libmail-box-perl
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- libmail-sendmail-perl
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- pkg-config po-debconf ttf-dejavu-core
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-Need to get 14.8 MB of archives.
-After this operation, 38.0 MB of additional disk space will be used.
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-Get:9 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.32.2-1 [1924 kB]
-Get:10 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.5-1 [135 kB]
-Get:11 http://ftp.hr.debian.org/debian/ unstable/main libexpat1 sparc 2.1.0-1 [131 kB]
-Get:12 http://ftp.hr.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.9-1 [410 kB]
-Get:13 http://ftp.hr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
-Get:14 http://ftp.hr.debian.org/debian/ unstable/main fontconfig-config all 2.9.0-5 [231 kB]
-Get:15 http://ftp.hr.debian.org/debian/ unstable/main libfontconfig1 sparc 2.9.0-5 [290 kB]
-Get:16 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8 sparc 8d-1 [137 kB]
-Get:17 http://ftp.hr.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.49-1 [181 kB]
-Get:18 http://ftp.hr.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.7-1 [17.6 kB]
-Get:19 http://ftp.hr.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.1-1 [25.1 kB]
-Get:20 http://ftp.hr.debian.org/debian/ unstable/main libxcb1 sparc 1.8.1-1 [39.7 kB]
-Get:21 http://ftp.hr.debian.org/debian/ unstable/main libx11-data all 2:1.4.99.901-2 [186 kB]
-Get:22 http://ftp.hr.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.99.901-2 [838 kB]
-Get:23 http://ftp.hr.debian.org/debian/ unstable/main libxpm4 sparc 1:3.5.10-1 [45.6 kB]
-Get:24 http://ftp.hr.debian.org/debian/ unstable/main libgd2-xpm sparc 2.0.36~rc1~dfsg-6.1 [224 kB]
-Get:25 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
-Get:26 http://ftp.hr.debian.org/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-7 [128 kB]
-Get:27 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.1 [205 kB]
-Get:28 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.21-7 [1123 kB]
-Get:29 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.1-2 [1031 kB]
-Get:30 http://ftp.hr.debian.org/debian/ unstable/main file sparc 5.11-1 [52.7 kB]
-Get:31 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-7 [130 kB]
-Get:32 http://ftp.hr.debian.org/debian/ unstable/main autotools-dev all 20120210.1 [72.7 kB]
-Get:33 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:34 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-7 [1885 kB]
-Get:35 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:36 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:37 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20120513 [694 kB]
-Get:38 http://ftp.hr.debian.org/debian/ unstable/main help2man sparc 1.40.9 [92.7 kB]
-Get:39 http://ftp.hr.debian.org/debian/ unstable/main libgtextutils0 sparc 0.6.2-1 [20.7 kB]
-Get:40 http://ftp.hr.debian.org/debian/ unstable/main libgtextutils-dev sparc 0.6.2-1 [26.0 kB]
-Get:41 http://ftp.hr.debian.org/debian/ unstable/main libperlio-gzip-perl sparc 0.18-1+b2 [17.9 kB]
-Get:42 http://ftp.hr.debian.org/debian/ unstable/main pkg-config sparc 0.26-1 [58.2 kB]
-Get:43 http://ftp.hr.debian.org/debian/ unstable/main libgd-gd2-perl sparc 1:2.46-3+b1 [195 kB]
-Get:44 http://ftp.hr.debian.org/debian/ unstable/main libgd-text-perl all 0.86-8 [42.4 kB]
-Get:45 http://ftp.hr.debian.org/debian/ unstable/main libgd-graph-perl all 1.44-6 [393 kB]
-debconf: delaying package configuration, since apt-utils is not installed
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-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-7) ...
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-Building database of manual pages ...
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-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 29 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 autotools-dev_20120210.1 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120513 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 fontconfig- [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
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-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue May 15 12:09:25 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.2-1.dsc
-dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2.orig.tar.bz2
-dpkg-source: info: unpacking fastx-toolkit_0.0.13.2-1.debian.tar.gz
-
-Check disc space
-────────────────
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-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package fastx-toolkit
-dpkg-buildpackage: source version 0.0.13.2-1
- dpkg-source --before-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: host architecture sparc
- fakeroot debian/rules clean
-dh clean
- dh_testdir
- dh_auto_clean
- dh_clean
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
- debian/rules build-arch
-dh build-arch
- dh_testdir -a
- dh_auto_configure -a
- ./configure --build=sparc-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/sparc-linux-gnu --libexecdir=\${prefix}/lib/sparc-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
-configure: WARNING: unrecognized options: --disable-maintainer-mode
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
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-checking whether make sets $(MAKE)... yes
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-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether gcc accepts -g... yes
-checking for gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of gcc... none
-checking for g++... g++
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ accepts -g... yes
-checking dependency style of g++... none
-checking build system type... sparc-unknown-linux-gnu
-checking host system type... sparc-unknown-linux-gnu
-checking for a sed that does not truncate output... /bin/sed
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-checking for ld used by gcc... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
-checking the name lister (/usr/bin/nm -B) interface... BSD nm
-checking whether ln -s works... yes
-checking the maximum length of command line arguments... 402653181
-checking whether the shell understands some XSI constructs... yes
-checking whether the shell understands "+="... yes
-checking for /usr/bin/ld option to reload object files... -r
-checking for objdump... objdump
-checking how to recognize dependent libraries... pass_all
-checking for ar... ar
-checking for strip... strip
-checking for ranlib... ranlib
-checking command to parse /usr/bin/nm -B output from gcc object... ok
-checking how to run the C preprocessor... gcc -E
-checking for ANSI C header files... yes
-checking for sys/types.h... yes
-checking for sys/stat.h... yes
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-checking for strings.h... yes
-checking for inttypes.h... yes
-checking for stdint.h... yes
-checking for unistd.h... yes
-checking for dlfcn.h... yes
-checking whether we are using the GNU C++ compiler... (cached) yes
-checking whether g++ accepts -g... (cached) yes
-checking dependency style of g++... (cached) none
-checking how to run the C++ preprocessor... g++ -E
-checking for objdir... .libs
-checking if gcc supports -fno-rtti -fno-exceptions... no
-checking for gcc option to produce PIC... -fPIC -DPIC
-checking if gcc PIC flag -fPIC -DPIC works... yes
-checking if gcc static flag -static works... yes
-checking if gcc supports -c -o file.o... yes
-checking if gcc supports -c -o file.o... (cached) yes
-checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
-checking whether -lc should be explicitly linked in... no
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking whether stripping libraries is possible... yes
-checking if libtool supports shared libraries... yes
-checking whether to build shared libraries... yes
-checking whether to build static libraries... yes
-checking for ld used by g++... /usr/bin/ld
-checking if the linker (/usr/bin/ld) is GNU ld... yes
-checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
-checking for g++ option to produce PIC... -fPIC -DPIC
-checking if g++ PIC flag -fPIC -DPIC works... yes
-checking if g++ static flag -static works... yes
-checking if g++ supports -c -o file.o... yes
-checking if g++ supports -c -o file.o... (cached) yes
-checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
-checking dynamic linker characteristics... GNU/Linux ld.so
-checking how to hardcode library paths into programs... immediate
-checking for long long int... yes
-checking for ISO C++ TR1 include files... yes
-checking for pkg-config... /usr/bin/pkg-config
-checking pkg-config is at least version 0.9.0... yes
-checking for GTEXTUTILS... yes
-configure: creating ./config.status
-config.status: creating Makefile
-config.status: creating doc/Makefile
-config.status: creating m4/Makefile
-config.status: creating src/Makefile
-config.status: creating src/libfastx/Makefile
-config.status: creating src/fastx_clipper/Makefile
-config.status: creating src/fastq_to_fasta/Makefile
-config.status: creating src/fastx_quality_stats/Makefile
-config.status: creating src/fastq_quality_converter/Makefile
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-config.status: creating src/seqalign_test/Makefile
-config.status: creating src/fasta_formatter/Makefile
-config.status: creating src/fasta_nucleotide_changer/Makefile
-config.status: creating src/fastx_renamer/Makefile
-config.status: creating src/fastq_masker/Makefile
-config.status: creating galaxy/Makefile
-config.status: creating galaxy/tools/Makefile
-config.status: creating galaxy/tools/fastx_toolkit/Makefile
-config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile
-config.status: creating galaxy/test-data/Makefile
-config.status: creating galaxy/static/Makefile
-config.status: creating galaxy/static/fastx_icons/Makefile
-config.status: creating galaxy/tool-data/Makefile
-config.status: creating scripts/Makefile
-config.status: creating build_scripts/Makefile
-config.status: creating config.h
-config.status: executing depfiles commands
-config.status: executing libtool commands
-configure: WARNING: unrecognized options: --disable-maintainer-mode
- dh_auto_build -a
- make -j1
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make all-recursive
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-Making all in m4
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-gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c
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-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making all in fastx_renamer
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making all in fastq_masker
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_masker.c
-/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-Making all in doc
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-Making all in galaxy
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making all in tools
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making all in cshl_custom_fastx_toolkit
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making all in test-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making all in static
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in fastx_icons
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `all'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `all-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making all in tool-data
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `all'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `all-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making all in scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-Making all in build_scripts
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `all-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- dh_auto_test -a
- make -j1 check
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-Making check in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-Making check in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-Making check in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-Making check in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making check in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making check in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making check in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making check in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making check in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making check in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making check in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making check in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making check in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making check in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making check in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making check in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making check in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making check in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making check in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-Making check in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-Making check in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making check in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making check in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making check in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making check in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Nothing to be done for `check'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Nothing to be done for `check-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making check in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Nothing to be done for `check'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Nothing to be done for `check-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making check in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-Making check in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Nothing to be done for `check'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[2]: Nothing to be done for `check-am'.
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- fakeroot debian/rules binary-arch
-dh binary-arch
- dh_testroot -a
- dh_prep -a
- rm -f debian/fastx-toolkit.substvars
- rm -f debian/fastx-toolkit.*.debhelper
- rm -rf debian/fastx-toolkit/
- dh_installdirs -a
- install -d debian/fastx-toolkit
- dh_auto_install -a
- make -j1 install DESTDIR=/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-Making install in m4
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal"
- /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/m4'
-Making install in src
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-Making install in libfastx
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/libfastx'
-Making install in fastx_clipper
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_clipper /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_clipper'
-Making install in fastx_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_trimmer'
-Making install in fastx_quality_stats
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_quality_stats'
-Making install in fastq_quality_converter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_converter'
-Making install in fastq_to_fasta
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_to_fasta'
-Making install in fastq_quality_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_filter'
-Making install in fastq_quality_trimmer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_quality_trimmer'
-Making install in fastx_artifacts_filter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_artifacts_filter'
-Making install in fastx_reverse_complement
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_reverse_complement'
-Making install in fastx_collapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_collapser /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_collapser'
-Making install in fastx_uncollapser
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_uncollapser'
-Making install in seqalign_test
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/seqalign_test'
-Making install in fasta_formatter
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_formatter /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_formatter'
-Making install in fasta_nucleotide_changer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fasta_nucleotide_changer'
-Making install in fastx_renamer
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastx_renamer /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastx_renamer'
-Making install in fastq_masker
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-libtool: install: /usr/bin/install -c fastq_masker /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src/fastq_masker'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/src'
-Making install in doc
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/doc'
-Making install in galaxy
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making install in tools
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/fastx_toolkit'
-Making install in cshl_custom_fastx_toolkit
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools/cshl_custom_fastx_toolkit'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tools'
-Making install in test-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/test-data'
-Making install in static
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in fastx_icons
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static/fastx_icons'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[5]: Nothing to be done for `install-exec-am'.
-make[5]: Nothing to be done for `install-data-am'.
-make[5]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/static'
-Making install in tool-data
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy/tool-data'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[4]: Nothing to be done for `install-exec-am'.
-make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/galaxy'
-Making install in scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-test -z "/usr/bin" || /bin/mkdir -p "/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin"
- /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin'
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/scripts'
-Making install in build_scripts
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/build_scripts'
-make[2]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[3]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[3]: Nothing to be done for `install-exec-am'.
-make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[2]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- debian/rules override_dh_install
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-dh_install
-rm --recursive /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/aclocal
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- dh_installdocs -a
- install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit
- chown -R 0:0 debian/fastx-toolkit/usr/share/doc
- chmod -R go=rX debian/fastx-toolkit/usr/share/doc
- chmod -R u\+rw debian/fastx-toolkit/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian
- install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright
- debian/rules override_dh_installchangelogs
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-dh_installchangelogs -k NEWS
- install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian
- install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- dh_installexamples -a
- debian/rules override_dh_installman
-make[1]: Entering directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
-mkdir -p /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1
-# The name strings are obtained from
-# http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools")
-# and
-# http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='changes the width of sequences line in a FASTA file' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convets FASTA sequences from/to RNA/DNA' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name="Masks nucleotides with 'N' (or other character) based on quality" \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1
-# FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Converts sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Filters sequences based on quality' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1
-dh_installman debian/fastq_quality_trimmer.1
- install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new
- chmod 644 fastq_masker.1.new
- mv -f fastq_masker.1.new fastq_masker.1
- man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new
- chmod 644 fastq_quality_filter.1.new
- mv -f fastq_quality_filter.1.new fastq_quality_filter.1
- man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new
- chmod 644 fasta_formatter.1.new
- mv -f fasta_formatter.1.new fasta_formatter.1
- man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new
- chmod 644 fastq_quality_trimmer.1.new
- mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1
- man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new
- chmod 644 fastq_quality_converter.1.new
- mv -f fastq_quality_converter.1.new fastq_quality_converter.1
- man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new
- chmod 644 fasta_nucleotide_changer.1.new
- mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Convert FASTQ files to FASTA files' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Artifacts Filter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Clipper' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Collapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Statistics' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Renamer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTQ/A Reverse Complement' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Trimmer' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Uncollapser' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1
-# Perl scripts add the full path to usage advise which needs to be removed
-# The script fasta_clipping_histogram.pl does not feature a '-h' option
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' -h '' \
- --name='Create a Linker Clipping Information Histogram' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTX Barcode Splitter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \
- sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \
- > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='Solexa-Quality BoxPlot plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1
-help2man --no-info --no-discard-stderr --version-string='0.0.13.2' --help-option='-h' \
- --name='FASTA/Q Nucleotide Distribution Plotter' \
- /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1
-for man in `find /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done
-find: `*.1': No such file or directory
-/bin/sh: 1: cannot create /build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2/debian/fastx-toolkit/usr/share/man/man1: Is a directory
-make[1]: Leaving directory `/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- dh_installcatalogs -a
- dh_installcron -a
- dh_installdebconf -a
- install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN
- dh_installemacsen -a
- dh_installifupdown -a
- dh_installinfo -a
- dh_installinit -a
- dh_installmenu -a
- dh_installmime -a
- dh_installmodules -a
- dh_installlogcheck -a
- dh_installlogrotate -a
- dh_installpam -a
- dh_installppp -a
- dh_installudev -a
- dh_installwm -a
- dh_installxfonts -a
- dh_installgsettings -a
- dh_bugfiles -a
- dh_ucf -a
- dh_lintian -a
- dh_gconf -a
- dh_icons -a
- dh_perl -a
- (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new
- mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars
- dh_usrlocal -a
- dh_link -a
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- dh_compress -a
- cd debian/fastx-toolkit
- chmod a-x usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_nucleotide_distribution_gr [...]
- gzip -9nf usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_nucleotide_distribution_gr [...]
- cd '/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN/fastx-toolkit-0.0.13.2'
- rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS
- ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz
- dh_fixperms -a
- find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
- dh_strip -a
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer
- strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer
- dh_makeshlibs -a
- rm -f debian/fastx-toolkit/DEBIAN/shlibs
- dh_shlibdeps -a
- dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian [...]
- dh_installdeb -a
- dh_gencontrol -a
- echo misc:Depends= >> debian/fastx-toolkit.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit
-dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends}
- chmod 644 debian/fastx-toolkit/DEBIAN/control
- chown 0:0 debian/fastx-toolkit/DEBIAN/control
- dh_md5sums -a
- (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/fastx-toolkit/DEBIAN/md5sums
- chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums
- dh_builddeb -a
- dpkg-deb --build debian/fastx-toolkit ..
-dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.2-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../fastx-toolkit_0.0.13.2-1_sparc.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build fastx-toolkit-0.0.13.2
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120515-1242
-
-fastx-toolkit_0.0.13.2-1_sparc.changes:
-Format: 1.8
-Date: Tue, 15 May 2012 21:02:22 +0900
-Source: fastx-toolkit
-Binary: fastx-toolkit
-Architecture: sparc
-Version: 0.0.13.2-1
-Distribution: sid
-Urgency: low
-Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools
-Changes:
- fastx-toolkit (0.0.13.2-1) unstable; urgency=low
- .
- 1313f16 Imported Upstream version 0.0.13.2
- dbfb3ae Removed debian/patches/gcc-4.7.patch, applied upstream.
- 182cd30 Include 7 digits of the commit ID in the changelog entry.
- 2ae7b63 Spellchecked common “See also” section of the manpages.
- 363856c Verbose Debhelper.
-Checksums-Sha1:
- 7f545d31504f291b9e7e8595906b1402e357837c 135284 fastx-toolkit_0.0.13.2-1_sparc.deb
-Checksums-Sha256:
- f64da7ae056d5181e88a2865869af21f6c8852687b7a943f27b3a242ccb139db 135284 fastx-toolkit_0.0.13.2-1_sparc.deb
-Files:
- cfb75eec3a794747f1331a46b7252c7b 135284 science optional fastx-toolkit_0.0.13.2-1_sparc.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-fastx-toolkit_0.0.13.2-1_sparc.deb
-──────────────────────────────────
-
- new debian package, version 2.0.
- size 135284 bytes: control archive= 2141 bytes.
- 1078 bytes, 19 lines control
- 3342 bytes, 46 lines md5sums
- Package: fastx-toolkit
- Version: 0.0.13.2-1
- Architecture: sparc
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 482
- Depends: libc6 (>= 2.6), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6), libgd-graph-perl, libperlio-gzip-perl
- Section: science
- Priority: optional
- Homepage: http://hannonlab.cshl.edu/fastx_toolkit/
- Description: FASTQ/A short nucleotide reads pre-processing tools
- The FASTX-Toolkit is a collection of command line tools for preprocessing
- short nucleotide reads in FASTA and FASTQ formats, usually produced by
- Next-Generation sequencing machines. The main processing of such FASTA/FASTQ
- files is mapping (aligning) the sequences to reference genomes or other
- databases using specialized programs like BWA, Bowtie and many others.
- However, it is sometimes more productive to preprocess the FASTA/FASTQ files
- before mapping the sequences to the genome—manipulating the sequences to
- produce better mapping results. The FASTX-Toolkit tools perform some of these
- preprocessing tasks.
-
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/bin/
--rwxr-xr-x root/root 18384 2012-05-15 12:42 ./usr/bin/fasta_formatter
--rwxr-xr-x root/root 18104 2012-05-15 12:42 ./usr/bin/fastq_quality_filter
--rwxr-xr-x root/root 5380 2012-05-15 12:42 ./usr/bin/fastq_quality_boxplot_graph.sh
--rwxr-xr-x root/root 18076 2012-05-15 12:42 ./usr/bin/fasta_nucleotide_changer
--rwxr-xr-x root/root 35036 2012-05-15 12:42 ./usr/bin/fastx_collapser
--rwxr-xr-x root/root 6069 2012-05-15 12:42 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh
--rwxr-xr-x root/root 18092 2012-05-15 12:42 ./usr/bin/fastx_artifacts_filter
--rwxr-xr-x root/root 5896 2012-05-15 12:42 ./usr/bin/fastx_nucleotide_distribution_graph.sh
--rwxr-xr-x root/root 2764 2012-05-15 12:42 ./usr/bin/fasta_clipping_histogram.pl
--rwxr-xr-x root/root 59740 2012-05-15 12:42 ./usr/bin/fastx_clipper
--rwxr-xr-x root/root 18080 2012-05-15 12:42 ./usr/bin/fastq_quality_converter
--rwxr-xr-x root/root 18108 2012-05-15 12:42 ./usr/bin/fastq_to_fasta
--rwxr-xr-x root/root 13925 2012-05-15 12:42 ./usr/bin/fastx_barcode_splitter.pl
--rwxr-xr-x root/root 18116 2012-05-15 12:42 ./usr/bin/fastq_quality_trimmer
--rwxr-xr-x root/root 18088 2012-05-15 12:42 ./usr/bin/fastx_reverse_complement
--rwxr-xr-x root/root 18084 2012-05-15 12:42 ./usr/bin/fastq_masker
--rwxr-xr-x root/root 26344 2012-05-15 12:42 ./usr/bin/fastx_quality_stats
--rwxr-xr-x root/root 35204 2012-05-15 12:42 ./usr/bin/fastx_uncollapser
--rwxr-xr-x root/root 26284 2012-05-15 12:42 ./usr/bin/fastx_trimmer
--rwxr-xr-x root/root 18104 2012-05-15 12:42 ./usr/bin/fastx_renamer
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/share/man/man1/
--rw-r--r-- root/root 904 2012-05-15 12:42 ./usr/share/man/man1/fastx_clipper.1.gz
--rw-r--r-- root/root 638 2012-05-15 12:42 ./usr/share/man/man1/fastx_trimmer.1.gz
--rw-r--r-- root/root 589 2012-05-15 12:42 ./usr/share/man/man1/fastx_uncollapser.1.gz
--rw-r--r-- root/root 557 2012-05-15 12:42 ./usr/share/man/man1/fastx_renamer.1.gz
--rw-r--r-- root/root 613 2012-05-15 12:42 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz
--rw-r--r-- root/root 599 2012-05-15 12:42 ./usr/share/man/man1/fastx_artifacts_filter.1.gz
--rw-r--r-- root/root 590 2012-05-15 12:42 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz
--rw-r--r-- root/root 2211 2012-05-15 12:42 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz
--rw-r--r-- root/root 645 2012-05-15 12:42 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz
--rw-r--r-- root/root 661 2012-05-15 12:42 ./usr/share/man/man1/fastq_to_fasta.1.gz
--rw-r--r-- root/root 518 2012-05-15 12:42 ./usr/share/man/man1/fastx_reverse_complement.1.gz
--rw-r--r-- root/root 929 2012-05-15 12:42 ./usr/share/man/man1/fastx_quality_stats.1.gz
--rw-r--r-- root/root 688 2012-05-15 12:42 ./usr/share/man/man1/fastq_masker.1.gz
--rw-r--r-- root/root 583 2012-05-15 12:42 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz
--rw-r--r-- root/root 468 2012-05-15 12:42 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz
--rw-r--r-- root/root 558 2012-05-15 12:42 ./usr/share/man/man1/fastq_quality_converter.1.gz
--rw-r--r-- root/root 659 2012-05-15 12:42 ./usr/share/man/man1/fastq_quality_filter.1.gz
--rw-r--r-- root/root 505 2012-05-15 12:42 ./usr/share/man/man1/fastx_collapser.1.gz
--rw-r--r-- root/root 922 2012-05-15 12:42 ./usr/share/man/man1/fasta_formatter.1.gz
--rw-r--r-- root/root 728 2012-05-15 12:42 ./usr/share/man/man1/fastq_quality_trimmer.1.gz
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-15 12:42 ./usr/share/doc/fastx-toolkit/
--rw-r--r-- root/root 425 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/changelog.gz
--rw-r--r-- root/root 372 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/THANKS
--rw-r--r-- root/root 3728 2012-04-12 20:02 ./usr/share/doc/fastx-toolkit/README.gz
--rw-r--r-- root/root 37701 2012-05-15 03:43 ./usr/share/doc/fastx-toolkit/copyright
--rw-r--r-- root/root 482 2012-05-15 03:39 ./usr/share/doc/fastx-toolkit/README.Debian
--rw-r--r-- root/root 802 2012-05-15 12:02 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2012-05-15 12:42 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-367b7ce4-d90f-4413-a91f-21d21c558869/build/buildd-fastx-toolkit_0.0.13.2-1-sparc-98yCEN
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: sparc
-Build-Space: 9024
-Build-Time: 101
-Distribution: sid
-Install-Time: 105
-Job: fastx-toolkit_0.0.13.2-1
-Package: fastx-toolkit
-Package-Time: 311
-Source-Version: 0.0.13.2-1
-Space: 9024
-Status: successful
-Version: 0.0.13.2-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20120515-1242
-Build needed 00:05:11, 9024k disc space
-Signature with key '24E4F805' requested:
diff --git a/upload b/upload
deleted file mode 100644
index 5c5e943..0000000
--- a/upload
+++ /dev/null
@@ -1,6 +0,0 @@
-u fastx-toolkit_0.0.13.2-1_amd64.deb ftp.upload.debian.org Tue May 15 21:11:59 2012
-u fastx-toolkit_0.0.13.2-1.debian.tar.gz ftp.upload.debian.org Tue May 15 21:12:00 2012
-u fastx-toolkit_0.0.13.2.orig.tar.bz2 ftp.upload.debian.org Tue May 15 21:12:03 2012
-u fastx-toolkit_0.0.13.2-1.dsc ftp.upload.debian.org Tue May 15 21:12:04 2012
-u fastx-toolkit_0.0.13.2-1_amd64.changes ftp.upload.debian.org Tue May 15 21:12:05 2012
-s fastx-toolkit_0.0.13.2-1_amd64.changes ftp.upload.debian.org Tue May 15 21:12:05 2012
--
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/fastx-toolkit.git
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