[med-svn] [picard-tools] 02/04: Merge tag 'upstream/1.101'

[Charles Plessy]

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plessy pushed a commit to branch master
in repository picard-tools.

commit 75a5a9215cd45fe52d13cfd4578796689f9588f5
Merge: fa4a3a6 ff4fd82
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Oct 28 19:12:35 2013 +0900

    Merge tag 'upstream/1.101'
    
    Upstream version 1.101
    
    # gpg: Signature faite le lun. 28 oct. 2013 19:12:35 JST avec la clef RSA d'identifiant 2295D502
    # gpg: Bonne signature de « Charles Plessy <plessy at debian.org> »

 build.xml                                          |    2 +-
 src/java/net/sf/picard/pedigree/PedFile.java       |   99 +++++++++++
 src/java/net/sf/picard/pedigree/PedTrio.java       |   45 +++++
 src/java/net/sf/picard/pedigree/Sex.java           |   26 +++
 src/java/net/sf/picard/util/MathUtil.java          |   17 ++
 src/java/net/sf/samtools/util/Iso8601Date.java     |    2 +-
 .../net/sf/samtools/util/RelativeIso8601Date.java  |  187 ++++++++++++++++++++
 .../org/broadinstitute/variant/vcf/VCFCodec.java   |    4 +-
 .../broadinstitute/variant/vcf/VCFFileReader.java  |   40 +++--
 .../sf/samtools/util/RelativeIso8601DateTest.java  |   39 ++++
 10 files changed, 442 insertions(+), 19 deletions(-)

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