[med-svn] [picard-tools] branch master updated (fa4a3a6 -> c8be686)

[Charles Plessy]

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plessy pushed a change to branch master
in repository picard-tools.

      from  fa4a3a6   Upload release 1.100
       new  ff4fd82   Imported Upstream version 1.101
       new  75a5a92   Merge tag 'upstream/1.101'
       new  2cdae8e   New upstream release with no new copyright nor license notice.
       new  c8be686   Conforms with Policy 3.9.5.

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 build.xml                                          |    2 +-
 debian/changelog                                   |    7 +
 debian/control                                     |    2 +-
 debian/copyright                                   |    2 +-
 src/java/net/sf/picard/pedigree/PedFile.java       |   99 +++++++++++
 src/java/net/sf/picard/pedigree/PedTrio.java       |   45 +++++
 src/java/net/sf/picard/pedigree/Sex.java           |   26 +++
 src/java/net/sf/picard/util/MathUtil.java          |   17 ++
 src/java/net/sf/samtools/util/Iso8601Date.java     |    2 +-
 .../net/sf/samtools/util/RelativeIso8601Date.java  |  187 ++++++++++++++++++++
 .../org/broadinstitute/variant/vcf/VCFCodec.java   |    4 +-
 .../broadinstitute/variant/vcf/VCFFileReader.java  |   40 +++--
 .../sf/samtools/util/RelativeIso8601DateTest.java  |   39 ++++
 13 files changed, 451 insertions(+), 21 deletions(-)
 create mode 100644 src/java/net/sf/picard/pedigree/PedFile.java
 create mode 100644 src/java/net/sf/picard/pedigree/PedTrio.java
 create mode 100644 src/java/net/sf/picard/pedigree/Sex.java
 create mode 100644 src/java/net/sf/samtools/util/RelativeIso8601Date.java
 create mode 100644 src/tests/java/net/sf/samtools/util/RelativeIso8601DateTest.java

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