[med-svn] r15062 - in trunk/packages/R: r-bioc-genomicfeatures/trunk/debian r-bioc-gviz/trunk/debian r-bioc-rsamtools/trunk/debian r-bioc-rtracklayer/trunk/debian

[Andreas Tille]

Author: tille
Date: 2013-10-30 07:54:40 +0000 (Wed, 30 Oct 2013)
New Revision: 15062

Modified:
   trunk/packages/R/r-bioc-genomicfeatures/trunk/debian/control
   trunk/packages/R/r-bioc-gviz/trunk/debian/control
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
   trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
Log:
Also update Dependencies about newly available r-bioc-genomicranges


Modified: trunk/packages/R/r-bioc-genomicfeatures/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-genomicfeatures/trunk/debian/control	2013-10-30 07:51:45 UTC (rev 15061)
+++ trunk/packages/R/r-bioc-genomicfeatures/trunk/debian/control	2013-10-30 07:54:40 UTC (rev 15062)
@@ -10,7 +10,8 @@
                r-cran-rsqlite,
                r-bioc-biobase,
                r-bioc-iranges,
-               r-bioc-biostrings
+               r-bioc-biostrings,
+               r-bioc-genomicranges
 Standards-Version: 3.9.4
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicfeatures/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicfeatures/trunk/
@@ -23,7 +24,8 @@
          r-cran-rsqlite,
          r-bioc-biobase,
          r-bioc-iranges,
-         r-bioc-biostrings
+         r-bioc-biostrings,
+         r-bioc-genomicranges
 Description: GNU R tools for making and manipulating transcript centric annotations
  A set of tools and methods for making and manipulating transcript
  centric annotations. With these tools the user can easily download the

Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-gviz/trunk/debian/control	2013-10-30 07:51:45 UTC (rev 15061)
+++ trunk/packages/R/r-bioc-gviz/trunk/debian/control	2013-10-30 07:54:40 UTC (rev 15062)
@@ -12,7 +12,8 @@
                r-bioc-biocgenerics,
                r-bioc-iranges,
                r-bioc-annotationdbi,
-               r-bioc-biostrings
+               r-bioc-biostrings,
+               r-bioc-genomicranges
 Standards-Version: 3.9.4
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-gviz/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-gviz/trunk/
@@ -28,7 +29,8 @@
          r-bioc-biocgenerics,
          r-bioc-iranges,
          r-bioc-annotationdbi,
-         r-bioc-biostrings
+         r-bioc-biostrings,
+         r-bioc-genomicranges
 Description: Plotting data and annotation information along genomic coordinates
  Genomic data analyses requires integrated visualization of known
  genomic information and new experimental data. Gviz uses the biomaRt and

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2013-10-30 07:51:45 UTC (rev 15061)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2013-10-30 07:54:40 UTC (rev 15062)
@@ -9,7 +9,8 @@
                r-cran-bitops,
                r-bioc-biocgenerics,
                r-bioc-iranges,
-               r-bioc-biostrings
+               r-bioc-biostrings,
+               r-bioc-genomicranges
 Standards-Version: 3.9.4
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rsamtools/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rsamtools/trunk/
@@ -22,7 +23,8 @@
          r-cran-bitops,
          r-bioc-biocgenerics,
          r-bioc-iranges,
-         r-bioc-biostrings
+         r-bioc-biostrings,
+         r-bioc-genomicranges
 Description: GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  This package provides an interface to the 'samtools', 'bcftools', and
  'tabix' utilities for manipulating SAM (Sequence Alignment / Map),

Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2013-10-30 07:51:45 UTC (rev 15061)
+++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control	2013-10-30 07:54:40 UTC (rev 15062)
@@ -9,7 +9,8 @@
                r-cran-xml,
                r-bioc-biocgenerics,
                r-bioc-iranges,
-               r-bioc-biostrings
+               r-bioc-biostrings,
+               r-bioc-genomicranges
 Standards-Version: 3.9.4
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rtracklayer/trunk/
@@ -22,7 +23,8 @@
          r-cran-xml,
          r-bioc-biocgenerics,
          r-bioc-iranges,
-         r-bioc-biostrings
+         r-bioc-biostrings,
+         r-bioc-genomicranges
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various