[med-svn] r14571 - in trunk/packages/R/r-bioc-affy/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2013-09-04 08:40:19 +0000 (Wed, 04 Sep 2013)
New Revision: 14571

Added:
   trunk/packages/R/r-bioc-affy/trunk/debian/patches/
   trunk/packages/R/r-bioc-affy/trunk/debian/patches/series
   trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
There is no need to inject an extra copy of zlib - just use the Debian packaged version


Added: trunk/packages/R/r-bioc-affy/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-affy/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/R/r-bioc-affy/trunk/debian/patches/series	2013-09-04 08:40:19 UTC (rev 14571)
@@ -0,0 +1 @@
+use_debian_packaged_zlib.patch

Added: trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch	                        (rev 0)
+++ trunk/packages/R/r-bioc-affy/trunk/debian/patches/use_debian_packaged_zlib.patch	2013-09-04 08:40:19 UTC (rev 14571)
@@ -0,0 +1,28 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Fri, 23 Aug 2013 12:11:49 +0200
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -13,8 +13,7 @@ Author: Rafael A. Irizarry <rafa at jhu.edu
+ Maintainer: Rafael A. Irizarry <rafa at jhu.edu>
+ Depends: R (>= 2.8.0), BiocGenerics (>= 0.1.12), Biobase (>= 2.5.5)
+ Imports: BiocGenerics, Biobase, affyio (>= 1.13.3), BiocInstaller,
+-        graphics, grDevices, methods, preprocessCore, stats, utils,
+-        zlibbioc
++        graphics, grDevices, methods, preprocessCore, stats, utils
+ Suggests: tkWidgets (>= 1.19.0), affydata, widgetTools
+ LinkingTo: preprocessCore
+ Description: The package contains functions for exploratory
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -4,8 +4,6 @@ importFrom(BiocGenerics, updateObject, c
+ 
+ import(affyio)
+ 
+-import(zlibbioc)
+-
+ importClassesFrom(Biobase, AnnotatedDataFrame, AssayData, eSet, MIAME,
+                   Versioned, VersionedBiobase, Versions)
+