[med-svn] r14621 - in trunk/packages/bioperl/trunk/debian: . patches

[Charles Plessy]

Author: plessy
Date: 2013-09-08 11:45:36 +0000 (Sun, 08 Sep 2013)
New Revision: 14621

Removed:
   trunk/packages/bioperl/trunk/debian/patches/fix_berkeleydb3_temp_file_creation
Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/patches/series
Log:
Removed patch ?\226?\128?\152fix_berkeleydb3_temp_file_creation?\226?\128?\153 applied upstream.


Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2013-09-08 11:43:57 UTC (rev 14620)
+++ trunk/packages/bioperl/trunk/debian/changelog	2013-09-08 11:45:36 UTC (rev 14621)
@@ -2,6 +2,7 @@
 
   * New upstream release (Closes: #720776)
   * Adjusted Depends and Recommends (4 additions).
+  * Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream.
 
  -- Charles Plessy <plessy at debian.org>  Sun, 08 Sep 2013 20:28:36 +0900
 

Deleted: trunk/packages/bioperl/trunk/debian/patches/fix_berkeleydb3_temp_file_creation
===================================================================
--- trunk/packages/bioperl/trunk/debian/patches/fix_berkeleydb3_temp_file_creation	2013-09-08 11:43:57 UTC (rev 14620)
+++ trunk/packages/bioperl/trunk/debian/patches/fix_berkeleydb3_temp_file_creation	2013-09-08 11:45:36 UTC (rev 14621)
@@ -1,17 +0,0 @@
-Subject: wrong order in file creation
-Description: tie operation has flags and mode in the wrong order.
- Fixed upstream with commit 2b0daf196e0f2acf373c2bc8f0bf2449c36edf40.
- Patch should be removed with next upstream release.
-Author: Olivier Sallou <olivier.sallou at irisa.fr
-Last-Updated: 02/03/2012
---- a/Bio/DB/SeqFeature/Store/berkeleydb3.pm
-+++ b/Bio/DB/SeqFeature/Store/berkeleydb3.pm
-@@ -497,7 +497,7 @@
-     my $numeric_cmp         = DB_File::BTREEINFO->new;
-     $numeric_cmp->{compare} = sub { $_[0] <=> $_[1] };
-     $numeric_cmp->{flags}   = R_DUP;
--    my $s = tie %sort,'DB_File',$name,0666,O_CREAT|O_RDWR,$numeric_cmp 
-+    my $s = tie %sort,'DB_File',$name,O_CREAT|O_RDWR,0666,$numeric_cmp 
- 	or $self->throw("Couldn't create temporary file for sorting: $!");
- 
-     my $index    = $self->index_db('locations');

Modified: trunk/packages/bioperl/trunk/debian/patches/series
===================================================================
--- trunk/packages/bioperl/trunk/debian/patches/series	2013-09-08 11:43:57 UTC (rev 14620)
+++ trunk/packages/bioperl/trunk/debian/patches/series	2013-09-08 11:45:36 UTC (rev 14621)
@@ -1,2 +1,2 @@
 fix_examples_perl_location
-fix_berkeleydb3_temp_file_creation
+#fix_berkeleydb3_temp_file_creation