[med-svn] r14646 - trunk/packages/profit/trunk/debian

[Steffen Möller]

Author: moeller
Date: 2013-09-10 17:04:43 +0000 (Tue, 10 Sep 2013)
New Revision: 14646

Added:
   trunk/packages/profit/trunk/debian/profit-3d.dirs
   trunk/packages/profit/trunk/debian/profit-3d.install
   trunk/packages/profit/trunk/debian/profit.links
Removed:
   trunk/packages/profit/trunk/debian/profit.dirs
   trunk/packages/profit/trunk/debian/profit.install
Modified:
   trunk/packages/profit/trunk/debian/README.Debian
   trunk/packages/profit/trunk/debian/control
   trunk/packages/profit/trunk/debian/rules
Log:
EMBOSS conflicts with profit .. the letter being unredistributable and hence not in our distribution. 


Modified: trunk/packages/profit/trunk/debian/README.Debian
===================================================================
--- trunk/packages/profit/trunk/debian/README.Debian	2013-09-10 08:40:47 UTC (rev 14645)
+++ trunk/packages/profit/trunk/debian/README.Debian	2013-09-10 17:04:43 UTC (rev 14646)
@@ -1,6 +1,9 @@
 profit for Debian
 -----------------
 
+/usr/bin/profit sadly clashes with the emboss package, for a very
+different funtion.
+
 The license of ProFit does not allow a redistribution.
 
 The documentation is not built, since it demanded too much of LaTeX to be installed,

Modified: trunk/packages/profit/trunk/debian/control
===================================================================
--- trunk/packages/profit/trunk/debian/control	2013-09-10 08:40:47 UTC (rev 14645)
+++ trunk/packages/profit/trunk/debian/control	2013-09-10 17:04:43 UTC (rev 14646)
@@ -8,7 +8,7 @@
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/profit/trunk/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/profit/trunk/
 
-Package: profit
+Package: profit-3d
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, profit-data
 Description: Protein structure alignment
@@ -16,7 +16,23 @@
  program. It has many features including flexible specification of
  fitting zones and atoms, calculation of RMS over different zones or
  atoms, RMS-by-residue calculation, on-line help facility, etc.
+ .
+ The binary is named profit-3D because of a name clash with an
+ EMBOSS tool.
 
+Package: profit
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, profit-3d
+Conflicts: emboss
+Description: Protein structure alignment
+ ProFit is designed to be the ultimate protein least squares fitting
+ program. It has many features including flexible specification of
+ fitting zones and atoms, calculation of RMS over different zones or
+ atoms, RMS-by-residue calculation, on-line help facility, etc.
+ .
+ A symbolic link is provided to have the binary name back to how
+ it is historically correct.
+
 Package: profit-data
 Architecture: all
 Recommends: profit

Copied: trunk/packages/profit/trunk/debian/profit-3d.dirs (from rev 14634, trunk/packages/profit/trunk/debian/profit.dirs)
===================================================================
--- trunk/packages/profit/trunk/debian/profit-3d.dirs	                        (rev 0)
+++ trunk/packages/profit/trunk/debian/profit-3d.dirs	2013-09-10 17:04:43 UTC (rev 14646)
@@ -0,0 +1,2 @@
+usr/lib/profit
+usr/bin

Copied: trunk/packages/profit/trunk/debian/profit-3d.install (from rev 14634, trunk/packages/profit/trunk/debian/profit.install)
===================================================================
--- trunk/packages/profit/trunk/debian/profit-3d.install	                        (rev 0)
+++ trunk/packages/profit/trunk/debian/profit-3d.install	2013-09-10 17:04:43 UTC (rev 14646)
@@ -0,0 +1 @@
+src/profit usr/lib/profit/

Deleted: trunk/packages/profit/trunk/debian/profit.dirs
===================================================================
--- trunk/packages/profit/trunk/debian/profit.dirs	2013-09-10 08:40:47 UTC (rev 14645)
+++ trunk/packages/profit/trunk/debian/profit.dirs	2013-09-10 17:04:43 UTC (rev 14646)
@@ -1,2 +0,0 @@
-usr/lib/profit
-usr/bin

Deleted: trunk/packages/profit/trunk/debian/profit.install
===================================================================
--- trunk/packages/profit/trunk/debian/profit.install	2013-09-10 08:40:47 UTC (rev 14645)
+++ trunk/packages/profit/trunk/debian/profit.install	2013-09-10 17:04:43 UTC (rev 14646)
@@ -1,2 +0,0 @@
-src/profit usr/lib/profit/
-debian/bin/profit usr/bin/

Added: trunk/packages/profit/trunk/debian/profit.links
===================================================================
--- trunk/packages/profit/trunk/debian/profit.links	                        (rev 0)
+++ trunk/packages/profit/trunk/debian/profit.links	2013-09-10 17:04:43 UTC (rev 14646)
@@ -0,0 +1 @@
+usr/bin/profit-3D usr/bin/profit

Modified: trunk/packages/profit/trunk/debian/rules
===================================================================
--- trunk/packages/profit/trunk/debian/rules	2013-09-10 08:40:47 UTC (rev 14645)
+++ trunk/packages/profit/trunk/debian/rules	2013-09-10 17:04:43 UTC (rev 14646)
@@ -18,3 +18,7 @@
 override_dh_auto_clean:
 	$(MAKE) -C src clean
 
+override_dh_install:
+	dh_install
+	cp $(CURDIR)/src/profit $(CURDIR)/debian/profit-3d/usr/bin/profit-3D
+