[med-svn] [freecontact] 05/05: 1.0.18-1 ready for upload

Laszlo Kajan lkajan at alioth.debian.org
Wed Sep 18 14:58:36 UTC 2013


This is an automated email from the git hooks/post-receive script.

lkajan pushed a commit to branch master
in repository freecontact.

commit a1a276cda099df7e117f45d3cf11a978cb170270
Author: Laszlo Kajan <lkajan at debian.org>
Date:   Wed Sep 18 16:58:02 2013 +0200

    1.0.18-1 ready for upload
---
 debian/changelog      |    6 +-
 debian/control        |    2 +-
 debian/source/options |    1 +
 src/Makefile.in       | 1395 -------------------------------------------------
 4 files changed, 6 insertions(+), 1398 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index eebbc2d..49d2c29 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,9 +2,11 @@ freecontact (1.0.18-1) unstable; urgency=low
 
   * New upstream release.
   * Added missing build dependencies.
-  * Fixed FTBFS on non-x86: x86intrin.h: No such file or directory (Closes: #721379).
+  * Fixed FTBFS on non-x86: x86intrin.h: No such file or directory
+    (Closes: #721379).
   * Fixed FTBFS: POD document had syntax errors (Closes: #721381).
-  * Fixed FTBFS on *-i386: relies on non-portable SSE2 intrinsics (Closes: #721380).
+  * Fixed FTBFS on *-i386: relies on non-portable SSE2 intrinsics
+    (Closes: #721380).
 
  -- Laszlo Kajan <lkajan at rostlab.org>  Wed, 18 Sep 2013 16:02:41 +0200
 
diff --git a/debian/control b/debian/control
index 4ab92fb..50321f3 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,7 @@ Section: science
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Laszlo Kajan <lkajan at rostlab.org>
-Build-Depends: debhelper (>= 9.0.0), automake, bash-completion, gfortran, libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, liblapack-dev | liblapack-3.so, libtool, libxerces-c-dev, perl, xsdcxx (>= 3.3)
+Build-Depends: debhelper (>= 9.0.0), automake, autotools-dev, bash-completion, gfortran, libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, liblapack-dev | liblapack-3.so, libtool, libxerces-c-dev, perl, xsdcxx (>= 3.3)
 Build-Depends-Indep: doxygen
 Standards-Version: 3.9.4
 Homepage: http://rostlab.org/
diff --git a/debian/source/options b/debian/source/options
index 7423a2d..5d722f9 100644
--- a/debian/source/options
+++ b/debian/source/options
@@ -1 +1,2 @@
 single-debian-patch
+extend-diff-ignore=config.guess|config.sub
diff --git a/src/Makefile.in b/src/Makefile.in
deleted file mode 100644
index 3a15578..0000000
--- a/src/Makefile.in
+++ /dev/null
@@ -1,1395 +0,0 @@
-# Makefile.in generated by automake 1.14 from Makefile.am.
-# @configure_input@
-
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
-
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
- at SET_MAKE@
-
-#   FreeContact - program to predict protein residue contacts from a sufficiently large multiple alignment
-#   Copyright (C) 2012-2013  Laszlo Kajan <lkajan at rostlab.org> Rost Lab, Technical University of Munich, Germany
-#   
-#   This program is free software: you can redistribute it and/or modify
-#   it under the terms of the GNU General Public License as published by
-#   the Free Software Foundation, either version 3 of the License, or
-#   (at your option) any later version.
-#   
-#   This program is distributed in the hope that it will be useful,
-#   but WITHOUT ANY WARRANTY; without even the implied warranty of
-#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-#   GNU General Public License for more details.
-#   
-#   You should have received a copy of the GNU General Public License
-#   along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
-# BIOXSD comes from configure.ac because of an apparent bug in depfile commands, see configure.ac
-
-
-
-VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
-am__make_running_with_option = \
-  case $${target_option-} in \
-      ?) ;; \
-      *) echo "am__make_running_with_option: internal error: invalid" \
-              "target option '$${target_option-}' specified" >&2; \
-         exit 1;; \
-  esac; \
-  has_opt=no; \
-  sane_makeflags=$$MAKEFLAGS; \
-  if $(am__is_gnu_make); then \
-    sane_makeflags=$$MFLAGS; \
-  else \
-    case $$MAKEFLAGS in \
-      *\\[\ \	]*) \
-        bs=\\; \
-        sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
-          | sed "s/$$bs$$bs[$$bs $$bs	]*//g"`;; \
-    esac; \
-  fi; \
-  skip_next=no; \
-  strip_trailopt () \
-  { \
-    flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \
-  }; \
-  for flg in $$sane_makeflags; do \
-    test $$skip_next = yes && { skip_next=no; continue; }; \
-    case $$flg in \
-      *=*|--*) continue;; \
-        -*I) strip_trailopt 'I'; skip_next=yes;; \
-      -*I?*) strip_trailopt 'I';; \
-        -*O) strip_trailopt 'O'; skip_next=yes;; \
-      -*O?*) strip_trailopt 'O';; \
-        -*l) strip_trailopt 'l'; skip_next=yes;; \
-      -*l?*) strip_trailopt 'l';; \
-      -[dEDm]) skip_next=yes;; \
-      -[JT]) skip_next=yes;; \
-    esac; \
-    case $$flg in \
-      *$$target_option*) has_opt=yes; break;; \
-    esac; \
-  done; \
-  test $$has_opt = yes
-am__make_dryrun = (target_option=n; $(am__make_running_with_option))
-am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
-pkgdatadir = $(datadir)/@PACKAGE@
-pkgincludedir = $(includedir)/@PACKAGE@
-pkglibdir = $(libdir)/@PACKAGE@
-pkglibexecdir = $(libexecdir)/@PACKAGE@
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = @build@
-host_triplet = @host@
-bin_PROGRAMS = freecontact$(EXEEXT)
-subdir = src
-DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
-	$(dist_check_SCRIPTS) $(dist_pkgdata_SCRIPTS) \
-	$(top_srcdir)/depcomp $(dist_examples_DATA) \
-	$(dist_pkgdata_DATA) $(top_srcdir)/test-driver
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/ax_blas.m4 \
-	$(top_srcdir)/m4/ax_boost_base.m4 \
-	$(top_srcdir)/m4/ax_boost_program_options.m4 \
-	$(top_srcdir)/m4/ax_check_compile_flag.m4 \
-	$(top_srcdir)/m4/ax_ext.m4 \
-	$(top_srcdir)/m4/ax_gcc_x86_cpuid.m4 \
-	$(top_srcdir)/m4/ax_lapack.m4 \
-	$(top_srcdir)/m4/ax_lib_xerces.m4 \
-	$(top_srcdir)/m4/ax_openmp.m4 \
-	$(top_srcdir)/m4/ax_prog_doxygen.m4 \
-	$(top_srcdir)/m4/ax_pthread.m4 $(top_srcdir)/m4/ax_xsdcxx.m4 \
-	$(top_srcdir)/m4/libtool.m4 $(top_srcdir)/m4/ltoptions.m4 \
-	$(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \
-	$(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/lib/config.h
-CONFIG_CLEAN_FILES =
-CONFIG_CLEAN_VPATH_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(pkgdatadir)" \
-	"$(DESTDIR)$(man1dir)" "$(DESTDIR)$(examplesdir)" \
-	"$(DESTDIR)$(pkgdatadir)"
-PROGRAMS = $(bin_PROGRAMS)
-am__freecontact_SOURCES_DIST = $(top_srcdir)/lib/config.h \
-	freecontact.cpp fc.h $(top_srcdir)/lib/freecontact.h \
-	_write_bioxsd.cpp
- at HAVE_XSDCXX_TRUE@am__objects_1 = freecontact-_write_bioxsd.$(OBJEXT)
-am_freecontact_OBJECTS = freecontact-freecontact.$(OBJEXT) \
-	$(am__objects_1)
- at HAVE_XSDCXX_TRUE@am__objects_2 =  \
- at HAVE_XSDCXX_TRUE@	freecontact-freecontact_input_xsd.$(OBJEXT) \
- at HAVE_XSDCXX_TRUE@	freecontact-freecontact_output_xsd.$(OBJEXT) \
- at HAVE_XSDCXX_TRUE@	freecontact-$(BIOXSD)_xsd.$(OBJEXT)
-nodist_freecontact_OBJECTS = $(am__objects_2)
-freecontact_OBJECTS = $(am_freecontact_OBJECTS) \
-	$(nodist_freecontact_OBJECTS)
-am__DEPENDENCIES_1 =
-freecontact_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) \
-	$(top_builddir)/lib/libfreecontact.la
-AM_V_lt = $(am__v_lt_ at AM_V@)
-am__v_lt_ = $(am__v_lt_ at AM_DEFAULT_V@)
-am__v_lt_0 = --silent
-am__v_lt_1 = 
-freecontact_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \
-	$(CXXFLAGS) $(freecontact_LDFLAGS) $(LDFLAGS) -o $@
-am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
-am__vpath_adj = case $$p in \
-    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
-    *) f=$$p;; \
-  esac;
-am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
-am__install_max = 40
-am__nobase_strip_setup = \
-  srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
-am__nobase_strip = \
-  for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
-am__nobase_list = $(am__nobase_strip_setup); \
-  for p in $$list; do echo "$$p $$p"; done | \
-  sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
-  $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
-    if (++n[$$2] == $(am__install_max)) \
-      { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
-    END { for (dir in files) print dir, files[dir] }'
-am__base_list = \
-  sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
-  sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
-am__uninstall_files_from_dir = { \
-  test -z "$$files" \
-    || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \
-    || { echo " ( cd '$$dir' && rm -f" $$files ")"; \
-         $(am__cd) "$$dir" && rm -f $$files; }; \
-  }
-SCRIPTS = $(dist_pkgdata_SCRIPTS)
-AM_V_P = $(am__v_P_ at AM_V@)
-am__v_P_ = $(am__v_P_ at AM_DEFAULT_V@)
-am__v_P_0 = false
-am__v_P_1 = :
-AM_V_GEN = $(am__v_GEN_ at AM_V@)
-am__v_GEN_ = $(am__v_GEN_ at AM_DEFAULT_V@)
-am__v_GEN_0 = @echo "  GEN     " $@;
-am__v_GEN_1 = 
-AM_V_at = $(am__v_at_ at AM_V@)
-am__v_at_ = $(am__v_at_ at AM_DEFAULT_V@)
-am__v_at_0 = @
-am__v_at_1 = 
-DEFAULT_INCLUDES = -I. at am__isrc@ -I$(top_builddir)/lib
-depcomp = $(SHELL) $(top_srcdir)/depcomp
-am__depfiles_maybe = depfiles
-am__mv = mv -f
-CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
-	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
-LTCXXCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) \
-	$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
-	$(AM_CXXFLAGS) $(CXXFLAGS)
-AM_V_CXX = $(am__v_CXX_ at AM_V@)
-am__v_CXX_ = $(am__v_CXX_ at AM_DEFAULT_V@)
-am__v_CXX_0 = @echo "  CXX     " $@;
-am__v_CXX_1 = 
-CXXLD = $(CXX)
-CXXLINK = $(LIBTOOL) $(AM_V_lt) --tag=CXX $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=link $(CXXLD) $(AM_CXXFLAGS) \
-	$(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-AM_V_CXXLD = $(am__v_CXXLD_ at AM_V@)
-am__v_CXXLD_ = $(am__v_CXXLD_ at AM_DEFAULT_V@)
-am__v_CXXLD_0 = @echo "  CXXLD   " $@;
-am__v_CXXLD_1 = 
-COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
-	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
-LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \
-	$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
-	$(AM_CFLAGS) $(CFLAGS)
-AM_V_CC = $(am__v_CC_ at AM_V@)
-am__v_CC_ = $(am__v_CC_ at AM_DEFAULT_V@)
-am__v_CC_0 = @echo "  CC      " $@;
-am__v_CC_1 = 
-CCLD = $(CC)
-LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
-	$(AM_LDFLAGS) $(LDFLAGS) -o $@
-AM_V_CCLD = $(am__v_CCLD_ at AM_V@)
-am__v_CCLD_ = $(am__v_CCLD_ at AM_DEFAULT_V@)
-am__v_CCLD_0 = @echo "  CCLD    " $@;
-am__v_CCLD_1 = 
-SOURCES = $(freecontact_SOURCES) $(nodist_freecontact_SOURCES)
-DIST_SOURCES = $(am__freecontact_SOURCES_DIST)
-am__can_run_installinfo = \
-  case $$AM_UPDATE_INFO_DIR in \
-    n|no|NO) false;; \
-    *) (install-info --version) >/dev/null 2>&1;; \
-  esac
-man1dir = $(mandir)/man1
-NROFF = nroff
-MANS = $(man_MANS)
-DATA = $(dist_examples_DATA) $(dist_pkgdata_DATA)
-am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
-# Read a list of newline-separated strings from the standard input,
-# and print each of them once, without duplicates.  Input order is
-# *not* preserved.
-am__uniquify_input = $(AWK) '\
-  BEGIN { nonempty = 0; } \
-  { items[$$0] = 1; nonempty = 1; } \
-  END { if (nonempty) { for (i in items) print i; }; } \
-'
-# Make sure the list of sources is unique.  This is necessary because,
-# e.g., the same source file might be shared among _SOURCES variables
-# for different programs/libraries.
-am__define_uniq_tagged_files = \
-  list='$(am__tagged_files)'; \
-  unique=`for i in $$list; do \
-    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-  done | $(am__uniquify_input)`
-ETAGS = etags
-CTAGS = ctags
-am__tty_colors_dummy = \
-  mgn= red= grn= lgn= blu= brg= std=; \
-  am__color_tests=no
-am__tty_colors = { \
-  $(am__tty_colors_dummy); \
-  if test "X$(AM_COLOR_TESTS)" = Xno; then \
-    am__color_tests=no; \
-  elif test "X$(AM_COLOR_TESTS)" = Xalways; then \
-    am__color_tests=yes; \
-  elif test "X$$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then \
-    am__color_tests=yes; \
-  fi; \
-  if test $$am__color_tests = yes; then \
-    red=''; \
-    grn=''; \
-    lgn=''; \
-    blu=''; \
-    mgn=''; \
-    brg=''; \
-    std=''; \
-  fi; \
-}
-am__recheck_rx = ^[ 	]*:recheck:[ 	]*
-am__global_test_result_rx = ^[ 	]*:global-test-result:[ 	]*
-am__copy_in_global_log_rx = ^[ 	]*:copy-in-global-log:[ 	]*
-# A command that, given a newline-separated list of test names on the
-# standard input, print the name of the tests that are to be re-run
-# upon "make recheck".
-am__list_recheck_tests = $(AWK) '{ \
-  recheck = 1; \
-  while ((rc = (getline line < ($$0 ".trs"))) != 0) \
-    { \
-      if (rc < 0) \
-        { \
-          if ((getline line2 < ($$0 ".log")) < 0) \
-	    recheck = 0; \
-          break; \
-        } \
-      else if (line ~ /$(am__recheck_rx)[nN][Oo]/) \
-        { \
-          recheck = 0; \
-          break; \
-        } \
-      else if (line ~ /$(am__recheck_rx)[yY][eE][sS]/) \
-        { \
-          break; \
-        } \
-    }; \
-  if (recheck) \
-    print $$0; \
-  close ($$0 ".trs"); \
-  close ($$0 ".log"); \
-}'
-# A command that, given a newline-separated list of test names on the
-# standard input, create the global log from their .trs and .log files.
-am__create_global_log = $(AWK) ' \
-function fatal(msg) \
-{ \
-  print "fatal: making $@: " msg | "cat >&2"; \
-  exit 1; \
-} \
-function rst_section(header) \
-{ \
-  print header; \
-  len = length(header); \
-  for (i = 1; i <= len; i = i + 1) \
-    printf "="; \
-  printf "\n\n"; \
-} \
-{ \
-  copy_in_global_log = 1; \
-  global_test_result = "RUN"; \
-  while ((rc = (getline line < ($$0 ".trs"))) != 0) \
-    { \
-      if (rc < 0) \
-         fatal("failed to read from " $$0 ".trs"); \
-      if (line ~ /$(am__global_test_result_rx)/) \
-        { \
-          sub("$(am__global_test_result_rx)", "", line); \
-          sub("[ 	]*$$", "", line); \
-          global_test_result = line; \
-        } \
-      else if (line ~ /$(am__copy_in_global_log_rx)[nN][oO]/) \
-        copy_in_global_log = 0; \
-    }; \
-  if (copy_in_global_log) \
-    { \
-      rst_section(global_test_result ": " $$0); \
-      while ((rc = (getline line < ($$0 ".log"))) != 0) \
-      { \
-        if (rc < 0) \
-          fatal("failed to read from " $$0 ".log"); \
-        print line; \
-      }; \
-      printf "\n"; \
-    }; \
-  close ($$0 ".trs"); \
-  close ($$0 ".log"); \
-}'
-# Restructured Text title.
-am__rst_title = { sed 's/.*/   &   /;h;s/./=/g;p;x;s/ *$$//;p;g' && echo; }
-# Solaris 10 'make', and several other traditional 'make' implementations,
-# pass "-e" to $(SHELL), and POSIX 2008 even requires this.  Work around it
-# by disabling -e (using the XSI extension "set +e") if it's set.
-am__sh_e_setup = case $$- in *e*) set +e;; esac
-# Default flags passed to test drivers.
-am__common_driver_flags = \
-  --color-tests "$$am__color_tests" \
-  --enable-hard-errors "$$am__enable_hard_errors" \
-  --expect-failure "$$am__expect_failure"
-# To be inserted before the command running the test.  Creates the
-# directory for the log if needed.  Stores in $dir the directory
-# containing $f, in $tst the test, in $log the log.  Executes the
-# developer- defined test setup AM_TESTS_ENVIRONMENT (if any), and
-# passes TESTS_ENVIRONMENT.  Set up options for the wrapper that
-# will run the test scripts (or their associated LOG_COMPILER, if
-# thy have one).
-am__check_pre = \
-$(am__sh_e_setup);					\
-$(am__vpath_adj_setup) $(am__vpath_adj)			\
-$(am__tty_colors);					\
-srcdir=$(srcdir); export srcdir;			\
-case "$@" in						\
-  */*) am__odir=`echo "./$@" | sed 's|/[^/]*$$||'`;;	\
-    *) am__odir=.;; 					\
-esac;							\
-test "x$$am__odir" = x"." || test -d "$$am__odir" 	\
-  || $(MKDIR_P) "$$am__odir" || exit $$?;		\
-if test -f "./$$f"; then dir=./;			\
-elif test -f "$$f"; then dir=;				\
-else dir="$(srcdir)/"; fi;				\
-tst=$$dir$$f; log='$@'; 				\
-if test -n '$(DISABLE_HARD_ERRORS)'; then		\
-  am__enable_hard_errors=no; 				\
-else							\
-  am__enable_hard_errors=yes; 				\
-fi; 							\
-case " $(XFAIL_TESTS) " in				\
-  *[\ \	]$$f[\ \	]* | *[\ \	]$$dir$$f[\ \	]*) \
-    am__expect_failure=yes;;				\
-  *)							\
-    am__expect_failure=no;;				\
-esac; 							\
-$(AM_TESTS_ENVIRONMENT) $(TESTS_ENVIRONMENT)
-# A shell command to get the names of the tests scripts with any registered
-# extension removed (i.e., equivalently, the names of the test logs, with
-# the '.log' extension removed).  The result is saved in the shell variable
-# '$bases'.  This honors runtime overriding of TESTS and TEST_LOGS.  Sadly,
-# we cannot use something simpler, involving e.g., "$(TEST_LOGS:.log=)",
-# since that might cause problem with VPATH rewrites for suffix-less tests.
-# See also 'test-harness-vpath-rewrite.sh' and 'test-trs-basic.sh'.
-am__set_TESTS_bases = \
-  bases='$(TEST_LOGS)'; \
-  bases=`for i in $$bases; do echo $$i; done | sed 's/\.log$$//'`; \
-  bases=`echo $$bases`
-RECHECK_LOGS = $(TEST_LOGS)
-AM_RECURSIVE_TARGETS = check recheck
-TEST_SUITE_LOG = test-suite.log
-TEST_EXTENSIONS = @EXEEXT@ .test
-LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver
-LOG_COMPILE = $(LOG_COMPILER) $(AM_LOG_FLAGS) $(LOG_FLAGS)
-am__set_b = \
-  case '$@' in \
-    */*) \
-      case '$*' in \
-        */*) b='$*';; \
-          *) b=`echo '$@' | sed 's/\.log$$//'`; \
-       esac;; \
-    *) \
-      b='$*';; \
-  esac
-am__test_logs1 = $(TESTS:=.log)
-am__test_logs2 = $(am__test_logs1:@EXEEXT at .log=.log)
-TEST_LOGS = $(am__test_logs2:.test.log=.log)
-TEST_LOG_DRIVER = $(SHELL) $(top_srcdir)/test-driver
-TEST_LOG_COMPILE = $(TEST_LOG_COMPILER) $(AM_TEST_LOG_FLAGS) \
-	$(TEST_LOG_FLAGS)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = @ACLOCAL@
-AMTAR = @AMTAR@
-AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
-AR = @AR@
-AUTOCONF = @AUTOCONF@
-AUTOHEADER = @AUTOHEADER@
-AUTOMAKE = @AUTOMAKE@
-AWK = @AWK@
-BIOXSD = @BIOXSD@
-BLAS_LIBS = @BLAS_LIBS@
-BOOST_CPPFLAGS = @BOOST_CPPFLAGS@
-BOOST_LDFLAGS = @BOOST_LDFLAGS@
-BOOST_PROGRAM_OPTIONS_LIB = @BOOST_PROGRAM_OPTIONS_LIB@
-CC = @CC@
-CCDEPMODE = @CCDEPMODE@
-CFLAGS = @CFLAGS@
-CPP = @CPP@
-CPPFLAGS = @CPPFLAGS@
-CXX = @CXX@
-CXXCPP = @CXXCPP@
-CXXDEPMODE = @CXXDEPMODE@
-CXXFLAGS = @CXXFLAGS@
-CYGPATH_W = @CYGPATH_W@
-DEFS = @DEFS@
-DEPDIR = @DEPDIR@
-DLLTOOL = @DLLTOOL@
-DOXYGEN_PAPER_SIZE = @DOXYGEN_PAPER_SIZE@
-DSYMUTIL = @DSYMUTIL@
-DUMPBIN = @DUMPBIN@
-DX_CONFIG = @DX_CONFIG@
-DX_DOCDIR = @DX_DOCDIR@
-DX_DOT = @DX_DOT@
-DX_DOXYGEN = @DX_DOXYGEN@
-DX_DVIPS = @DX_DVIPS@
-DX_EGREP = @DX_EGREP@
-DX_ENV = @DX_ENV@
-DX_FLAG_chi = @DX_FLAG_chi@
-DX_FLAG_chm = @DX_FLAG_chm@
-DX_FLAG_doc = @DX_FLAG_doc@
-DX_FLAG_dot = @DX_FLAG_dot@
-DX_FLAG_html = @DX_FLAG_html@
-DX_FLAG_man = @DX_FLAG_man@
-DX_FLAG_pdf = @DX_FLAG_pdf@
-DX_FLAG_ps = @DX_FLAG_ps@
-DX_FLAG_rtf = @DX_FLAG_rtf@
-DX_FLAG_xml = @DX_FLAG_xml@
-DX_HHC = @DX_HHC@
-DX_LATEX = @DX_LATEX@
-DX_MAKEINDEX = @DX_MAKEINDEX@
-DX_PDFLATEX = @DX_PDFLATEX@
-DX_PERL = @DX_PERL@
-DX_PROJECT = @DX_PROJECT@
-ECHO_C = @ECHO_C@
-ECHO_N = @ECHO_N@
-ECHO_T = @ECHO_T@
-EGREP = @EGREP@
-EXEEXT = @EXEEXT@
-F77 = @F77@
-FC = @FC@
-FCFLAGS = @FCFLAGS@
-FCLIBS = @FCLIBS@
-FFLAGS = @FFLAGS@
-FGREP = @FGREP@
-FLIBS = @FLIBS@
-GREP = @GREP@
-INSTALL = @INSTALL@
-INSTALL_DATA = @INSTALL_DATA@
-INSTALL_PROGRAM = @INSTALL_PROGRAM@
-INSTALL_SCRIPT = @INSTALL_SCRIPT@
-INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
-LAPACK_LIBS = @LAPACK_LIBS@
-LD = @LD@
-LDFLAGS = @LDFLAGS@
-LIBOBJS = @LIBOBJS@
-LIBS = @LIBS@
-LIBTOOL = @LIBTOOL@
-LIPO = @LIPO@
-LN_S = @LN_S@
-LTLIBOBJS = @LTLIBOBJS@
-MAKEINFO = @MAKEINFO@
-MANIFEST_TOOL = @MANIFEST_TOOL@
-MKDIR_P = @MKDIR_P@
-NM = @NM@
-NMEDIT = @NMEDIT@
-O3FLAGS = @O3FLAGS@
-OBJDUMP = @OBJDUMP@
-OBJEXT = @OBJEXT@
-OPENMP_CFLAGS = @OPENMP_CFLAGS@
-OPENMP_CXXFLAGS = @OPENMP_CXXFLAGS@
-OPENMP_FCFLAGS = @OPENMP_FCFLAGS@
-OPENMP_FFLAGS = @OPENMP_FFLAGS@
-OTOOL = @OTOOL@
-OTOOL64 = @OTOOL64@
-PACKAGE = @PACKAGE@
-PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
-PACKAGE_NAME = @PACKAGE_NAME@
-PACKAGE_STRING = @PACKAGE_STRING@
-PACKAGE_TARNAME = @PACKAGE_TARNAME@
-PACKAGE_URL = @PACKAGE_URL@
-PACKAGE_VERSION = @PACKAGE_VERSION@
-PATH_SEPARATOR = @PATH_SEPARATOR@
-PTHREAD_CC = @PTHREAD_CC@
-PTHREAD_CFLAGS = @PTHREAD_CFLAGS@
-PTHREAD_LIBS = @PTHREAD_LIBS@
-RANLIB = @RANLIB@
-SED = @SED@
-SET_MAKE = @SET_MAKE@
-SHELL = @SHELL@
-SIMD_FLAGS = @SIMD_FLAGS@
-STRIP = @STRIP@
-VERSION = @VERSION@
-XERCES_CPPFLAGS = @XERCES_CPPFLAGS@
-XERCES_LDFLAGS = @XERCES_LDFLAGS@
-XERCES_LIBS = @XERCES_LIBS@
-XERCES_VERSION = @XERCES_VERSION@
-XSDCXX = @XSDCXX@
-XSDCXX_CPPFLAGS = @XSDCXX_CPPFLAGS@
-abs_builddir = @abs_builddir@
-abs_srcdir = @abs_srcdir@
-abs_top_builddir = @abs_top_builddir@
-abs_top_srcdir = @abs_top_srcdir@
-ac_ct_AR = @ac_ct_AR@
-ac_ct_CC = @ac_ct_CC@
-ac_ct_CXX = @ac_ct_CXX@
-ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
-ac_ct_F77 = @ac_ct_F77@
-ac_ct_FC = @ac_ct_FC@
-am__include = @am__include@
-am__leading_dot = @am__leading_dot@
-am__quote = @am__quote@
-am__tar = @am__tar@
-am__untar = @am__untar@
-ax_pthread_config = @ax_pthread_config@
-bindir = @bindir@
-build = @build@
-build_alias = @build_alias@
-build_cpu = @build_cpu@
-build_os = @build_os@
-build_vendor = @build_vendor@
-builddir = @builddir@
-datadir = @datadir@
-datarootdir = @datarootdir@
-docdir = @docdir@
-dvidir = @dvidir@
-exec_prefix = @exec_prefix@
-host = @host@
-host_alias = @host_alias@
-host_cpu = @host_cpu@
-host_os = @host_os@
-host_vendor = @host_vendor@
-htmldir = @htmldir@
-includedir = @includedir@
-infodir = @infodir@
-install_sh = @install_sh@
-libdir = @libdir@
-libexecdir = @libexecdir@
-localedir = @localedir@
-localstatedir = @localstatedir@
-mandir = @mandir@
-mkdir_p = @mkdir_p@
-oldincludedir = @oldincludedir@
-pdfdir = @pdfdir@
-prefix = @prefix@
-program_transform_name = @program_transform_name@
-psdir = @psdir@
-sbindir = @sbindir@
-sharedstatedir = @sharedstatedir@
-srcdir = @srcdir@
-sysconfdir = @sysconfdir@
-target_alias = @target_alias@
-top_build_prefix = @top_build_prefix@
-top_builddir = @top_builddir@
-top_srcdir = @top_srcdir@
- at HAVE_XSDCXX_TRUE@XSDSOURCES = freecontact_input_xsd.cxx freecontact_input_xsd.hxx freecontact_output_xsd.cxx freecontact_output_xsd.hxx $(BIOXSD)_xsd.cxx $(BIOXSD)_xsd.hxx
- at HAVE_XSDCXX_TRUE@XMLSOURCES = _write_bioxsd.cpp
-man_MANS = freecontact.1
-TESTS = test_freecontact
-dist_check_SCRIPTS = test_freecontact
-examplesdir = $(docdir)/examples
-dist_examples_DATA = demo_1000.aln demo_1000.psicov.50 PF00071_v25_1000.fa PF00071_v25_1000.xml PF00071_v25_1000.evfold.50 PF00071_v25_1000.evfold.50.xml
-dist_pkgdata_SCRIPTS = a2m2aln
-# lkajan: I am not sure where to install these, perhaps [1]? That is not policy, though.
-# [1] http://debian-xml-sgml.alioth.debian.org/xml-policy/xml-infrastructure-dirs.html
-dist_pkgdata_DATA = $(BIOXSD).xsd freecontact_input.xsd freecontact_output.xsd
-AM_CPPFLAGS = $(BOOST_CPPFLAGS) -I$(top_srcdir)/lib -D__sysconfdir__=\"$(sysconfdir)\" -D__pkgdatadir__=\"$(pkgdatadir)\" -Wall
-AM_CXXFLAGS = $(OPENMP_CXXFLAGS)
-AM_LDFLAGS = $(OPENMP_CXXFLAGS) $(BOOST_LDFLAGS) -Wall
-freecontact_SOURCES = $(top_srcdir)/lib/config.h freecontact.cpp fc.h $(top_srcdir)/lib/freecontact.h $(XMLSOURCES)
-nodist_freecontact_SOURCES = $(XSDSOURCES)
-# lkajan: _xsd.[ch]xx gets built into $(top_builddir)/src
-freecontact_CPPFLAGS = -I$(top_srcdir)/lib -I$(top_builddir)/src $(XERCES_CPPFLAGS) $(XSDCXX_CPPFLAGS)
-freecontact_LDFLAGS = $(XERCES_LDFLAGS)
-freecontact_LDADD = $(BOOST_PROGRAM_OPTIONS_LIB) $(XERCES_LIBS) $(top_builddir)/lib/libfreecontact.la
-
-# statically linked version
-STATIC_LAPACK_LIBDIR = /usr/lib/atlas-base
-all: all-am
-
-.SUFFIXES:
-.SUFFIXES: .cpp .cxx .lo .log .o .obj .test .test$(EXEEXT) .trs
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile'; \
-	$(am__cd) $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu src/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(am__aclocal_m4_deps):
-install-binPROGRAMS: $(bin_PROGRAMS)
-	@$(NORMAL_INSTALL)
-	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
-	if test -n "$$list"; then \
-	  echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
-	  $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
-	fi; \
-	for p in $$list; do echo "$$p $$p"; done | \
-	sed 's/$(EXEEXT)$$//' | \
-	while read p p1; do if test -f $$p \
-	 || test -f $$p1 \
-	  ; then echo "$$p"; echo "$$p"; else :; fi; \
-	done | \
-	sed -e 'p;s,.*/,,;n;h' \
-	    -e 's|.*|.|' \
-	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
-	sed 'N;N;N;s,\n, ,g' | \
-	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
-	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
-	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
-	    else { print "f", $$3 "/" $$4, $$1; } } \
-	  END { for (d in files) print "f", d, files[d] }' | \
-	while read type dir files; do \
-	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
-	    test -z "$$files" || { \
-	    echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
-	    $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
-	    } \
-	; done
-
-uninstall-binPROGRAMS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
-	files=`for p in $$list; do echo "$$p"; done | \
-	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
-	      -e 's/$$/$(EXEEXT)/' \
-	`; \
-	test -n "$$list" || exit 0; \
-	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
-	cd "$(DESTDIR)$(bindir)" && rm -f $$files
-
-clean-binPROGRAMS:
-	@list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \
-	echo " rm -f" $$list; \
-	rm -f $$list || exit $$?; \
-	test -n "$(EXEEXT)" || exit 0; \
-	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
-	echo " rm -f" $$list; \
-	rm -f $$list
-
-freecontact$(EXEEXT): $(freecontact_OBJECTS) $(freecontact_DEPENDENCIES) $(EXTRA_freecontact_DEPENDENCIES) 
-	@rm -f freecontact$(EXEEXT)
-	$(AM_V_CXXLD)$(freecontact_LINK) $(freecontact_OBJECTS) $(freecontact_LDADD) $(LIBS)
-install-dist_pkgdataSCRIPTS: $(dist_pkgdata_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	@list='$(dist_pkgdata_SCRIPTS)'; test -n "$(pkgdatadir)" || list=; \
-	if test -n "$$list"; then \
-	  echo " $(MKDIR_P) '$(DESTDIR)$(pkgdatadir)'"; \
-	  $(MKDIR_P) "$(DESTDIR)$(pkgdatadir)" || exit 1; \
-	fi; \
-	for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \
-	done | \
-	sed -e 'p;s,.*/,,;n' \
-	    -e 'h;s|.*|.|' \
-	    -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \
-	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \
-	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
-	    if ($$2 == $$4) { files[d] = files[d] " " $$1; \
-	      if (++n[d] == $(am__install_max)) { \
-		print "f", d, files[d]; n[d] = 0; files[d] = "" } } \
-	    else { print "f", d "/" $$4, $$1 } } \
-	  END { for (d in files) print "f", d, files[d] }' | \
-	while read type dir files; do \
-	     if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
-	     test -z "$$files" || { \
-	       echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(pkgdatadir)$$dir'"; \
-	       $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(pkgdatadir)$$dir" || exit $$?; \
-	     } \
-	; done
-
-uninstall-dist_pkgdataSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(dist_pkgdata_SCRIPTS)'; test -n "$(pkgdatadir)" || exit 0; \
-	files=`for p in $$list; do echo "$$p"; done | \
-	       sed -e 's,.*/,,;$(transform)'`; \
-	dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
-
-mostlyclean-compile:
-	-rm -f *.$(OBJEXT)
-
-distclean-compile:
-	-rm -f *.tab.c
-
- at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/freecontact-$(BIOXSD)_xsd.Po at am__quote@
- at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/freecontact-_write_bioxsd.Po at am__quote@
- at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/freecontact-freecontact.Po at am__quote@
- at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/freecontact-freecontact_input_xsd.Po at am__quote@
- at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/freecontact-freecontact_output_xsd.Po at am__quote@
-
-.cpp.o:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXXCOMPILE) -c -o $@ $<
-
-.cpp.obj:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
-
-.cpp.lo:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(LTCXXCOMPILE) -c -o $@ $<
-
-freecontact-freecontact.o: freecontact.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact.o -MD -MP -MF $(DEPDIR)/freecontact-freecontact.Tpo -c -o freecontact-freecontact.o `test -f 'freecontact.cpp' || echo '$(srcdir)/'`freecontact.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact.Tpo $(DEPDIR)/freecontact-freecontact.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact.cpp' object='freecontact-freecontact.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact.o `test -f 'freecontact.cpp' || echo '$(srcdir)/'`freecontact.cpp
-
-freecontact-freecontact.obj: freecontact.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact.obj -MD -MP -MF $(DEPDIR)/freecontact-freecontact.Tpo -c -o freecontact-freecontact.obj `if test -f 'freecontact.cpp'; then $(CYGPATH_W) 'freecontact.cpp'; else $(CYGPATH_W) '$(srcdir)/freecontact.cpp'; fi`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact.Tpo $(DEPDIR)/freecontact-freecontact.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact.cpp' object='freecontact-freecontact.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact.obj `if test -f 'freecontact.cpp'; then $(CYGPATH_W) 'freecontact.cpp'; else $(CYGPATH_W) '$(srcdir)/freecontact.cpp'; fi`
-
-freecontact-_write_bioxsd.o: _write_bioxsd.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-_write_bioxsd.o -MD -MP -MF $(DEPDIR)/freecontact-_write_bioxsd.Tpo -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo '$(srcdir)/'`_write_bioxsd.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-_write_bioxsd.Tpo $(DEPDIR)/freecontact-_write_bioxsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='_write_bioxsd.cpp' object='freecontact-_write_bioxsd.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo '$(srcdir)/'`_write_bioxsd.cpp
-
-freecontact-_write_bioxsd.obj: _write_bioxsd.cpp
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-_write_bioxsd.obj -MD -MP -MF $(DEPDIR)/freecontact-_write_bioxsd.Tpo -c -o freecontact-_write_bioxsd.obj `if test -f '_write_bioxsd.cpp'; then $(CYGPATH_W) '_write_bioxsd.cpp'; else $(CYGPATH_W) '$(srcdir)/_write_bioxsd.cpp'; fi`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-_write_bioxsd.Tpo $(DEPDIR)/freecontact-_write_bioxsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='_write_bioxsd.cpp' object='freecontact-_write_bioxsd.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-_write_bioxsd.obj `if test -f '_write_bioxsd.cpp'; then $(CYGPATH_W) '_write_bioxsd.cpp'; else $(CYGPATH_W) '$(srcdir)/_write_bioxsd.cpp'; fi`
-
-freecontact-freecontact_input_xsd.o: freecontact_input_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact_input_xsd.o -MD -MP -MF $(DEPDIR)/freecontact-freecontact_input_xsd.Tpo -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo '$(srcdir)/'`freecontact_input_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact_input_xsd.Tpo $(DEPDIR)/freecontact-freecontact_input_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact_input_xsd.cxx' object='freecontact-freecontact_input_xsd.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo '$(srcdir)/'`freecontact_input_xsd.cxx
-
-freecontact-freecontact_input_xsd.obj: freecontact_input_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact_input_xsd.obj -MD -MP -MF $(DEPDIR)/freecontact-freecontact_input_xsd.Tpo -c -o freecontact-freecontact_input_xsd.obj `if test -f 'freecontact_input_xsd.cxx'; then $(CYGPATH_W) 'freecontact_input_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/freecontact_input_xsd.cxx'; fi`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact_input_xsd.Tpo $(DEPDIR)/freecontact-freecontact_input_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact_input_xsd.cxx' object='freecontact-freecontact_input_xsd.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact_input_xsd.obj `if test -f 'freecontact_input_xsd.cxx'; then $(CYGPATH_W) 'freecontact_input_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/freecontact_input_xsd.cxx'; fi`
-
-freecontact-freecontact_output_xsd.o: freecontact_output_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact_output_xsd.o -MD -MP -MF $(DEPDIR)/freecontact-freecontact_output_xsd.Tpo -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo '$(srcdir)/'`freecontact_output_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact_output_xsd.Tpo $(DEPDIR)/freecontact-freecontact_output_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact_output_xsd.cxx' object='freecontact-freecontact_output_xsd.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo '$(srcdir)/'`freecontact_output_xsd.cxx
-
-freecontact-freecontact_output_xsd.obj: freecontact_output_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-freecontact_output_xsd.obj -MD -MP -MF $(DEPDIR)/freecontact-freecontact_output_xsd.Tpo -c -o freecontact-freecontact_output_xsd.obj `if test -f 'freecontact_output_xsd.cxx'; then $(CYGPATH_W) 'freecontact_output_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/freecontact_output_xsd.cxx'; fi`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-freecontact_output_xsd.Tpo $(DEPDIR)/freecontact-freecontact_output_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='freecontact_output_xsd.cxx' object='freecontact-freecontact_output_xsd.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-freecontact_output_xsd.obj `if test -f 'freecontact_output_xsd.cxx'; then $(CYGPATH_W) 'freecontact_output_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/freecontact_output_xsd.cxx'; fi`
-
-freecontact-$(BIOXSD)_xsd.o: $(BIOXSD)_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-$(BIOXSD)_xsd.o -MD -MP -MF $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Tpo -c -o freecontact-$(BIOXSD)_xsd.o `test -f '$(BIOXSD)_xsd.cxx' || echo '$(srcdir)/'`$(BIOXSD)_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Tpo $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(BIOXSD)_xsd.cxx' object='freecontact-$(BIOXSD)_xsd.o' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-$(BIOXSD)_xsd.o `test -f '$(BIOXSD)_xsd.cxx' || echo '$(srcdir)/'`$(BIOXSD)_xsd.cxx
-
-freecontact-$(BIOXSD)_xsd.obj: $(BIOXSD)_xsd.cxx
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT freecontact-$(BIOXSD)_xsd.obj -MD -MP -MF $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Tpo -c -o freecontact-$(BIOXSD)_xsd.obj `if test -f '$(BIOXSD)_xsd.cxx'; then $(CYGPATH_W) '$(BIOXSD)_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/$(BIOXSD)_xsd.cxx'; fi`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Tpo $(DEPDIR)/freecontact-$(BIOXSD)_xsd.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(BIOXSD)_xsd.cxx' object='freecontact-$(BIOXSD)_xsd.obj' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(freecontact_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o freecontact-$(BIOXSD)_xsd.obj `if test -f '$(BIOXSD)_xsd.cxx'; then $(CYGPATH_W) '$(BIOXSD)_xsd.cxx'; else $(CYGPATH_W) '$(srcdir)/$(BIOXSD)_xsd.cxx'; fi`
-
-.cxx.o:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXXCOMPILE) -c -o $@ $<
-
-.cxx.obj:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
-
-.cxx.lo:
- at am__fastdepCXX_TRUE@	$(AM_V_CXX)$(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
- at am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
- at AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- at am__fastdepCXX_FALSE@	$(AM_V_CXX at am__nodep@)$(LTCXXCOMPILE) -c -o $@ $<
-
-mostlyclean-libtool:
-	-rm -f *.lo
-
-clean-libtool:
-	-rm -rf .libs _libs
-install-man1: $(man_MANS)
-	@$(NORMAL_INSTALL)
-	@list1=''; \
-	list2='$(man_MANS)'; \
-	test -n "$(man1dir)" \
-	  && test -n "`echo $$list1$$list2`" \
-	  || exit 0; \
-	echo " $(MKDIR_P) '$(DESTDIR)$(man1dir)'"; \
-	$(MKDIR_P) "$(DESTDIR)$(man1dir)" || exit 1; \
-	{ for i in $$list1; do echo "$$i"; done;  \
-	if test -n "$$list2"; then \
-	  for i in $$list2; do echo "$$i"; done \
-	    | sed -n '/\.1[a-z]*$$/p'; \
-	fi; \
-	} | while read p; do \
-	  if test -f $$p; then d=; else d="$(srcdir)/"; fi; \
-	  echo "$$d$$p"; echo "$$p"; \
-	done | \
-	sed -e 'n;s,.*/,,;p;h;s,.*\.,,;s,^[^1][0-9a-z]*$$,1,;x' \
-	      -e 's,\.[0-9a-z]*$$,,;$(transform);G;s,\n,.,' | \
-	sed 'N;N;s,\n, ,g' | { \
-	list=; while read file base inst; do \
-	  if test "$$base" = "$$inst"; then list="$$list $$file"; else \
-	    echo " $(INSTALL_DATA) '$$file' '$(DESTDIR)$(man1dir)/$$inst'"; \
-	    $(INSTALL_DATA) "$$file" "$(DESTDIR)$(man1dir)/$$inst" || exit $$?; \
-	  fi; \
-	done; \
-	for i in $$list; do echo "$$i"; done | $(am__base_list) | \
-	while read files; do \
-	  test -z "$$files" || { \
-	    echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(man1dir)'"; \
-	    $(INSTALL_DATA) $$files "$(DESTDIR)$(man1dir)" || exit $$?; }; \
-	done; }
-
-uninstall-man1:
-	@$(NORMAL_UNINSTALL)
-	@list=''; test -n "$(man1dir)" || exit 0; \
-	files=`{ for i in $$list; do echo "$$i"; done; \
-	l2='$(man_MANS)'; for i in $$l2; do echo "$$i"; done | \
-	  sed -n '/\.1[a-z]*$$/p'; \
-	} | sed -e 's,.*/,,;h;s,.*\.,,;s,^[^1][0-9a-z]*$$,1,;x' \
-	      -e 's,\.[0-9a-z]*$$,,;$(transform);G;s,\n,.,'`; \
-	dir='$(DESTDIR)$(man1dir)'; $(am__uninstall_files_from_dir)
-install-dist_examplesDATA: $(dist_examples_DATA)
-	@$(NORMAL_INSTALL)
-	@list='$(dist_examples_DATA)'; test -n "$(examplesdir)" || list=; \
-	if test -n "$$list"; then \
-	  echo " $(MKDIR_P) '$(DESTDIR)$(examplesdir)'"; \
-	  $(MKDIR_P) "$(DESTDIR)$(examplesdir)" || exit 1; \
-	fi; \
-	for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  echo "$$d$$p"; \
-	done | $(am__base_list) | \
-	while read files; do \
-	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(examplesdir)'"; \
-	  $(INSTALL_DATA) $$files "$(DESTDIR)$(examplesdir)" || exit $$?; \
-	done
-
-uninstall-dist_examplesDATA:
-	@$(NORMAL_UNINSTALL)
-	@list='$(dist_examples_DATA)'; test -n "$(examplesdir)" || list=; \
-	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
-	dir='$(DESTDIR)$(examplesdir)'; $(am__uninstall_files_from_dir)
-install-dist_pkgdataDATA: $(dist_pkgdata_DATA)
-	@$(NORMAL_INSTALL)
-	@list='$(dist_pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
-	if test -n "$$list"; then \
-	  echo " $(MKDIR_P) '$(DESTDIR)$(pkgdatadir)'"; \
-	  $(MKDIR_P) "$(DESTDIR)$(pkgdatadir)" || exit 1; \
-	fi; \
-	for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  echo "$$d$$p"; \
-	done | $(am__base_list) | \
-	while read files; do \
-	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(pkgdatadir)'"; \
-	  $(INSTALL_DATA) $$files "$(DESTDIR)$(pkgdatadir)" || exit $$?; \
-	done
-
-uninstall-dist_pkgdataDATA:
-	@$(NORMAL_UNINSTALL)
-	@list='$(dist_pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
-	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
-	dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
-
-ID: $(am__tagged_files)
-	$(am__define_uniq_tagged_files); mkid -fID $$unique
-tags: tags-am
-TAGS: tags
-
-tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
-	set x; \
-	here=`pwd`; \
-	$(am__define_uniq_tagged_files); \
-	shift; \
-	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
-	  test -n "$$unique" || unique=$$empty_fix; \
-	  if test $$# -gt 0; then \
-	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	      "$$@" $$unique; \
-	  else \
-	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	      $$unique; \
-	  fi; \
-	fi
-ctags: ctags-am
-
-CTAGS: ctags
-ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
-	$(am__define_uniq_tagged_files); \
-	test -z "$(CTAGS_ARGS)$$unique" \
-	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$unique
-
-GTAGS:
-	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && $(am__cd) $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) "$$here"
-cscopelist: cscopelist-am
-
-cscopelist-am: $(am__tagged_files)
-	list='$(am__tagged_files)'; \
-	case "$(srcdir)" in \
-	  [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \
-	  *) sdir=$(subdir)/$(srcdir) ;; \
-	esac; \
-	for i in $$list; do \
-	  if test -f "$$i"; then \
-	    echo "$(subdir)/$$i"; \
-	  else \
-	    echo "$$sdir/$$i"; \
-	  fi; \
-	done >> $(top_builddir)/cscope.files
-
-distclean-tags:
-	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
-
-# Recover from deleted '.trs' file; this should ensure that
-# "rm -f foo.log; make foo.trs" re-run 'foo.test', and re-create
-# both 'foo.log' and 'foo.trs'.  Break the recipe in two subshells
-# to avoid problems with "make -n".
-.log.trs:
-	rm -f $< $@
-	$(MAKE) $(AM_MAKEFLAGS) $<
-
-# Leading 'am--fnord' is there to ensure the list of targets does not
-# expand to empty, as could happen e.g. with make check TESTS=''.
-am--fnord $(TEST_LOGS) $(TEST_LOGS:.log=.trs): $(am__force_recheck)
-am--force-recheck:
-	@:
-
-$(TEST_SUITE_LOG): $(TEST_LOGS)
-	@$(am__set_TESTS_bases); \
-	am__f_ok () { test -f "$$1" && test -r "$$1"; }; \
-	redo_bases=`for i in $$bases; do \
-	              am__f_ok $$i.trs && am__f_ok $$i.log || echo $$i; \
-	            done`; \
-	if test -n "$$redo_bases"; then \
-	  redo_logs=`for i in $$redo_bases; do echo $$i.log; done`; \
-	  redo_results=`for i in $$redo_bases; do echo $$i.trs; done`; \
-	  if $(am__make_dryrun); then :; else \
-	    rm -f $$redo_logs && rm -f $$redo_results || exit 1; \
-	  fi; \
-	fi; \
-	if test -n "$$am__remaking_logs"; then \
-	  echo "fatal: making $(TEST_SUITE_LOG): possible infinite" \
-	       "recursion detected" >&2; \
-	else \
-	  am__remaking_logs=yes $(MAKE) $(AM_MAKEFLAGS) $$redo_logs; \
-	fi; \
-	if $(am__make_dryrun); then :; else \
-	  st=0;  \
-	  errmsg="fatal: making $(TEST_SUITE_LOG): failed to create"; \
-	  for i in $$redo_bases; do \
-	    test -f $$i.trs && test -r $$i.trs \
-	      || { echo "$$errmsg $$i.trs" >&2; st=1; }; \
-	    test -f $$i.log && test -r $$i.log \
-	      || { echo "$$errmsg $$i.log" >&2; st=1; }; \
-	  done; \
-	  test $$st -eq 0 || exit 1; \
-	fi
-	@$(am__sh_e_setup); $(am__tty_colors); $(am__set_TESTS_bases); \
-	ws='[ 	]'; \
-	results=`for b in $$bases; do echo $$b.trs; done`; \
-	test -n "$$results" || results=/dev/null; \
-	all=`  grep "^$$ws*:test-result:"           $$results | wc -l`; \
-	pass=` grep "^$$ws*:test-result:$$ws*PASS"  $$results | wc -l`; \
-	fail=` grep "^$$ws*:test-result:$$ws*FAIL"  $$results | wc -l`; \
-	skip=` grep "^$$ws*:test-result:$$ws*SKIP"  $$results | wc -l`; \
-	xfail=`grep "^$$ws*:test-result:$$ws*XFAIL" $$results | wc -l`; \
-	xpass=`grep "^$$ws*:test-result:$$ws*XPASS" $$results | wc -l`; \
-	error=`grep "^$$ws*:test-result:$$ws*ERROR" $$results | wc -l`; \
-	if test `expr $$fail + $$xpass + $$error` -eq 0; then \
-	  success=true; \
-	else \
-	  success=false; \
-	fi; \
-	br='==================='; br=$$br$$br$$br$$br; \
-	result_count () \
-	{ \
-	    if test x"$$1" = x"--maybe-color"; then \
-	      maybe_colorize=yes; \
-	    elif test x"$$1" = x"--no-color"; then \
-	      maybe_colorize=no; \
-	    else \
-	      echo "$@: invalid 'result_count' usage" >&2; exit 4; \
-	    fi; \
-	    shift; \
-	    desc=$$1 count=$$2; \
-	    if test $$maybe_colorize = yes && test $$count -gt 0; then \
-	      color_start=$$3 color_end=$$std; \
-	    else \
-	      color_start= color_end=; \
-	    fi; \
-	    echo "$${color_start}# $$desc $$count$${color_end}"; \
-	}; \
-	create_testsuite_report () \
-	{ \
-	  result_count $$1 "TOTAL:" $$all   "$$brg"; \
-	  result_count $$1 "PASS: " $$pass  "$$grn"; \
-	  result_count $$1 "SKIP: " $$skip  "$$blu"; \
-	  result_count $$1 "XFAIL:" $$xfail "$$lgn"; \
-	  result_count $$1 "FAIL: " $$fail  "$$red"; \
-	  result_count $$1 "XPASS:" $$xpass "$$red"; \
-	  result_count $$1 "ERROR:" $$error "$$mgn"; \
-	}; \
-	{								\
-	  echo "$(PACKAGE_STRING): $(subdir)/$(TEST_SUITE_LOG)" |	\
-	    $(am__rst_title);						\
-	  create_testsuite_report --no-color;				\
-	  echo;								\
-	  echo ".. contents:: :depth: 2";				\
-	  echo;								\
-	  for b in $$bases; do echo $$b; done				\
-	    | $(am__create_global_log);					\
-	} >$(TEST_SUITE_LOG).tmp || exit 1;				\
-	mv $(TEST_SUITE_LOG).tmp $(TEST_SUITE_LOG);			\
-	if $$success; then						\
-	  col="$$grn";							\
-	 else								\
-	  col="$$red";							\
-	  test x"$$VERBOSE" = x || cat $(TEST_SUITE_LOG);		\
-	fi;								\
-	echo "$${col}$$br$${std}"; 					\
-	echo "$${col}Testsuite summary for $(PACKAGE_STRING)$${std}";	\
-	echo "$${col}$$br$${std}"; 					\
-	create_testsuite_report --maybe-color;				\
-	echo "$$col$$br$$std";						\
-	if $$success; then :; else					\
-	  echo "$${col}See $(subdir)/$(TEST_SUITE_LOG)$${std}";		\
-	  if test -n "$(PACKAGE_BUGREPORT)"; then			\
-	    echo "$${col}Please report to $(PACKAGE_BUGREPORT)$${std}";	\
-	  fi;								\
-	  echo "$$col$$br$$std";					\
-	fi;								\
-	$$success || exit 1
-
-check-TESTS:
-	@list='$(RECHECK_LOGS)';           test -z "$$list" || rm -f $$list
-	@list='$(RECHECK_LOGS:.log=.trs)'; test -z "$$list" || rm -f $$list
-	@test -z "$(TEST_SUITE_LOG)" || rm -f $(TEST_SUITE_LOG)
-	@set +e; $(am__set_TESTS_bases); \
-	log_list=`for i in $$bases; do echo $$i.log; done`; \
-	trs_list=`for i in $$bases; do echo $$i.trs; done`; \
-	log_list=`echo $$log_list`; trs_list=`echo $$trs_list`; \
-	$(MAKE) $(AM_MAKEFLAGS) $(TEST_SUITE_LOG) TEST_LOGS="$$log_list"; \
-	exit $$?;
-recheck: all $(dist_check_SCRIPTS)
-	@test -z "$(TEST_SUITE_LOG)" || rm -f $(TEST_SUITE_LOG)
-	@set +e; $(am__set_TESTS_bases); \
-	bases=`for i in $$bases; do echo $$i; done \
-	         | $(am__list_recheck_tests)` || exit 1; \
-	log_list=`for i in $$bases; do echo $$i.log; done`; \
-	log_list=`echo $$log_list`; \
-	$(MAKE) $(AM_MAKEFLAGS) $(TEST_SUITE_LOG) \
-	        am__force_recheck=am--force-recheck \
-	        TEST_LOGS="$$log_list"; \
-	exit $$?
-test_freecontact.log: test_freecontact
-	@p='test_freecontact'; \
-	b='test_freecontact'; \
-	$(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
-	--log-file $$b.log --trs-file $$b.trs \
-	$(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
-	"$$tst" $(AM_TESTS_FD_REDIRECT)
-.test.log:
-	@p='$<'; \
-	$(am__set_b); \
-	$(am__check_pre) $(TEST_LOG_DRIVER) --test-name "$$f" \
-	--log-file $$b.log --trs-file $$b.trs \
-	$(am__common_driver_flags) $(AM_TEST_LOG_DRIVER_FLAGS) $(TEST_LOG_DRIVER_FLAGS) -- $(TEST_LOG_COMPILE) \
-	"$$tst" $(AM_TESTS_FD_REDIRECT)
- at am__EXEEXT_TRUE@.test$(EXEEXT).log:
- at am__EXEEXT_TRUE@	@p='$<'; \
- at am__EXEEXT_TRUE@	$(am__set_b); \
- at am__EXEEXT_TRUE@	$(am__check_pre) $(TEST_LOG_DRIVER) --test-name "$$f" \
- at am__EXEEXT_TRUE@	--log-file $$b.log --trs-file $$b.trs \
- at am__EXEEXT_TRUE@	$(am__common_driver_flags) $(AM_TEST_LOG_DRIVER_FLAGS) $(TEST_LOG_DRIVER_FLAGS) -- $(TEST_LOG_COMPILE) \
- at am__EXEEXT_TRUE@	"$$tst" $(AM_TESTS_FD_REDIRECT)
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d "$(distdir)/$$file"; then \
-	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
-	    fi; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
-	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
-	    fi; \
-	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
-	  else \
-	    test -f "$(distdir)/$$file" \
-	    || cp -p $$d/$$file "$(distdir)/$$file" \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-	$(MAKE) $(AM_MAKEFLAGS) $(dist_check_SCRIPTS)
-	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
-check: check-am
-all-am: Makefile $(PROGRAMS) $(SCRIPTS) $(MANS) $(DATA)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(pkgdatadir)" "$(DESTDIR)$(man1dir)" "$(DESTDIR)$(examplesdir)" "$(DESTDIR)$(pkgdatadir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	if test -z '$(STRIP)'; then \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	      install; \
-	else \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
-	fi
-mostlyclean-generic:
-	-test -z "$(TEST_LOGS)" || rm -f $(TEST_LOGS)
-	-test -z "$(TEST_LOGS:.log=.trs)" || rm -f $(TEST_LOGS:.log=.trs)
-	-test -z "$(TEST_SUITE_LOG)" || rm -f $(TEST_SUITE_LOG)
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-binPROGRAMS clean-generic clean-libtool clean-local \
-	mostlyclean-am
-
-distclean: distclean-am
-	-rm -rf ./$(DEPDIR)
-	-rm -f Makefile
-distclean-am: clean-am distclean-compile distclean-generic \
-	distclean-tags
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-html-am:
-
-info: info-am
-
-info-am:
-
-install-data-am: install-dist_examplesDATA install-dist_pkgdataDATA \
-	install-dist_pkgdataSCRIPTS install-man
-
-install-dvi: install-dvi-am
-
-install-dvi-am:
-
-install-exec-am: install-binPROGRAMS
-
-install-html: install-html-am
-
-install-html-am:
-
-install-info: install-info-am
-
-install-info-am:
-
-install-man: install-man1
-
-install-pdf: install-pdf-am
-
-install-pdf-am:
-
-install-ps: install-ps-am
-
-install-ps-am:
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -rf ./$(DEPDIR)
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-compile mostlyclean-generic \
-	mostlyclean-libtool
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binPROGRAMS uninstall-dist_examplesDATA \
-	uninstall-dist_pkgdataDATA uninstall-dist_pkgdataSCRIPTS \
-	uninstall-man
-
-uninstall-man: uninstall-man1
-
-.MAKE: check-am install-am install-strip
-
-.PHONY: CTAGS GTAGS TAGS all all-am check check-TESTS check-am clean \
-	clean-binPROGRAMS clean-generic clean-libtool clean-local \
-	cscopelist-am ctags ctags-am distclean distclean-compile \
-	distclean-generic distclean-libtool distclean-tags distdir dvi \
-	dvi-am html html-am info info-am install install-am \
-	install-binPROGRAMS install-data install-data-am \
-	install-dist_examplesDATA install-dist_pkgdataDATA \
-	install-dist_pkgdataSCRIPTS install-dvi install-dvi-am \
-	install-exec install-exec-am install-html install-html-am \
-	install-info install-info-am install-man install-man1 \
-	install-pdf install-pdf-am install-ps install-ps-am \
-	install-strip installcheck installcheck-am installdirs \
-	maintainer-clean maintainer-clean-generic mostlyclean \
-	mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
-	pdf pdf-am ps ps-am recheck tags tags-am uninstall \
-	uninstall-am uninstall-binPROGRAMS uninstall-dist_examplesDATA \
-	uninstall-dist_pkgdataDATA uninstall-dist_pkgdataSCRIPTS \
-	uninstall-man uninstall-man1
-
-
-$(man_MANS) : %.1 : %.cpp
-	sed -e 's|__pkgdatadir__|$(pkgdatadir)|g;s|__examplesdir__|$(examplesdir)|g;s|__sysconfdir__|$(sysconfdir)|g;s|__bindir__|$(bindir)|g;s|__PACKAGE_VERSION__|$(PACKAGE_VERSION)|g' "$<" | \
-	pod2man --utf8 -c 'User Commands' -r "$(VERSION)" -name $(shell echo "$(basename $@)" | tr '[:lower:]' '[:upper:]') > "$@"
-
- at HAVE_XSDCXX_TRUE@.SECONDARY: freecontact_input_xsd.cxx freecontact_input_xsd.hxx freecontact_output_xsd.cxx freecontact_output_xsd.hxx
- at HAVE_XSDCXX_TRUE@%_xsd.cxx %_xsd.hxx : %.xsd
- at HAVE_XSDCXX_TRUE@	$(XSDCXX) cxx-tree --location-map http://bioxsd.org/$(BIOXSD).xsd=$(BIOXSD).xsd \
- at HAVE_XSDCXX_TRUE@		--namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \
- at HAVE_XSDCXX_TRUE@		--namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \
- at HAVE_XSDCXX_TRUE@		--namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \
- at HAVE_XSDCXX_TRUE@		--generate-serialization --generate-doxygen \
- at HAVE_XSDCXX_TRUE@		--generate-polymorphic --polymorphic-type-all \
- at HAVE_XSDCXX_TRUE@		--omit-default-attributes \
- at HAVE_XSDCXX_TRUE@		--root-element-all \
- at HAVE_XSDCXX_TRUE@		--hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \
- at HAVE_XSDCXX_TRUE@		$<
-
- at HAVE_XSDCXX_TRUE@freecontact_input_xsd.hxx : $(BIOXSD)_xsd.hxx
- at HAVE_XSDCXX_TRUE@freecontact_input_xsd.cxx : $(BIOXSD)_xsd.hxx
- at HAVE_XSDCXX_TRUE@freecontact_output_xsd.hxx : $(BIOXSD)_xsd.hxx
- at HAVE_XSDCXX_TRUE@freecontact_output_xsd.cxx : $(BIOXSD)_xsd.hxx
- at HAVE_XSDCXX_TRUE@_write_bioxsd.cpp : freecontact_input_xsd.hxx freecontact_output_xsd.hxx $(BIOXSD)_xsd.hxx
-
-clean-local:
-	rm -f $(man_MANS) $(XSDSOURCES)
-	rm -f freecontact.static
-freecontact.static: freecontact
-	$(freecontact_LINK) -all-static -L$(STATIC_LAPACK_LIBDIR) $(freecontact_OBJECTS) $(freecontact_LDADD) $(LIBS)
-
-#include $(srcdir)/glassotest.mk
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/freecontact.git



More information about the debian-med-commit mailing list