[med-svn] [cnrun] 01/10: separate upstream from distro-specific files
andrei zavada
hmmr-guest at alioth.debian.org
Sun Sep 22 17:19:12 UTC 2013
This is an automated email from the git hooks/post-receive script.
hmmr-guest pushed a commit to branch master
in repository cnrun.
commit dad0ab73ad78fda37a156dc5a9bea3d004cf9a68
Author: Andrei Zavada <johnhommer at gmail.com>
Date: Mon Sep 16 16:40:03 2013 +0300
separate upstream from distro-specific files
---
AUTHORS => upstream/AUTHORS | 0
COPYING => upstream/COPYING | 0
ChangeLog => upstream/ChangeLog | 0
INSTALL => upstream/INSTALL | 0
Makefile.am => upstream/Makefile.am | 0
NEWS => upstream/NEWS | 0
README => upstream/README | 0
upstream/autogen.sh | 9 +
upstream/cnrun-1.1.13.tar.bz2 | Bin 0 -> 378626 bytes
upstream/compile | 347 ++++++++++++++++++++
configure.in => upstream/configure.ac | 2 +-
{doc => upstream/doc}/Makefile.am | 0
{doc => upstream/doc}/README | 0
.../doc}/examples/ratiocoding/ORNa.x1000.in | 0
.../doc}/examples/ratiocoding/ORNb.x1000.in | 0
.../doc}/examples/ratiocoding/PN.0.sxf.target | 0
{doc => upstream/doc}/examples/ratiocoding/batch | 0
{doc => upstream/doc}/examples/ratiocoding/m.nml | 0
.../ratiocoding/rational-plot-sdf-interactive | 0
.../examples/ratiocoding/rational-plot-sdf-static | 0
.../doc}/examples/ratiocoding/rational-plot-var | 0
{doc => upstream/doc}/examples/ratiocoding/script | 0
{man => upstream/man}/.gitignore | 0
{man => upstream/man}/cnrun.1.in | 0
{man => upstream/man}/hh-latency-estimator.1.in | 0
{man => upstream/man}/spike2sdf.1.in | 0
{man => upstream/man}/varfold.1.in | 0
{src => upstream/src}/.gitignore | 0
{src => upstream/src}/Makefile.am | 0
{src => upstream/src}/hh-latency-estimator.cc | 0
{src => upstream/src}/libcn/Makefile.am | 0
{src => upstream/src}/libcn/base-neuron.hh | 0
{src => upstream/src}/libcn/base-synapse.hh | 0
{src => upstream/src}/libcn/base-unit.cc | 0
{src => upstream/src}/libcn/base-unit.hh | 0
{src => upstream/src}/libcn/hosted-attr.hh | 0
{src => upstream/src}/libcn/hosted-neurons.cc | 0
{src => upstream/src}/libcn/hosted-neurons.hh | 0
{src => upstream/src}/libcn/hosted-synapses.cc | 0
{src => upstream/src}/libcn/hosted-synapses.hh | 0
{src => upstream/src}/libcn/integrate-base.hh | 0
{src => upstream/src}/libcn/integrate-rk65.hh | 0
{src => upstream/src}/libcn/model-cycle.cc | 0
{src => upstream/src}/libcn/model-nmlio.cc | 0
{src => upstream/src}/libcn/model-struct.cc | 0
{src => upstream/src}/libcn/model.hh | 0
{src => upstream/src}/libcn/mx-attr.hh | 0
{src => upstream/src}/libcn/param-unit-literals.hh | 0
{src => upstream/src}/libcn/sources.cc | 0
{src => upstream/src}/libcn/sources.hh | 0
{src => upstream/src}/libcn/standalone-attr.hh | 0
{src => upstream/src}/libcn/standalone-neurons.cc | 0
{src => upstream/src}/libcn/standalone-neurons.hh | 0
{src => upstream/src}/libcn/standalone-synapses.cc | 0
{src => upstream/src}/libcn/standalone-synapses.hh | 0
{src => upstream/src}/libcn/types.cc | 0
{src => upstream/src}/libcn/types.hh | 0
{src => upstream/src}/libstilton/Makefile.am | 0
{src => upstream/src}/libstilton/exprparser.cc | 0
{src => upstream/src}/libstilton/exprparser.hh | 0
{src => upstream/src}/libstilton/gcc-builtins.hh | 0
{src => upstream/src}/libstilton/log-facility.cc | 0
{src => upstream/src}/libstilton/log-facility.hh | 0
{src => upstream/src}/libstilton/pointaligned-s.cc | 0
{src => upstream/src}/libstilton/pointaligned-s.hh | 0
.../src}/runner-interpreter-completions.cc | 0
{src => upstream/src}/runner-interpreter.cc | 0
{src => upstream/src}/runner-main.cc | 0
{src => upstream/src}/runner.hh | 0
{src => upstream/src}/spike2sdf.cc | 0
{src => upstream/src}/varfold.cc | 0
71 files changed, 357 insertions(+), 1 deletion(-)
diff --git a/AUTHORS b/upstream/AUTHORS
similarity index 100%
rename from AUTHORS
rename to upstream/AUTHORS
diff --git a/COPYING b/upstream/COPYING
similarity index 100%
rename from COPYING
rename to upstream/COPYING
diff --git a/ChangeLog b/upstream/ChangeLog
similarity index 100%
rename from ChangeLog
rename to upstream/ChangeLog
diff --git a/INSTALL b/upstream/INSTALL
similarity index 100%
rename from INSTALL
rename to upstream/INSTALL
diff --git a/Makefile.am b/upstream/Makefile.am
similarity index 100%
rename from Makefile.am
rename to upstream/Makefile.am
diff --git a/NEWS b/upstream/NEWS
similarity index 100%
rename from NEWS
rename to upstream/NEWS
diff --git a/README b/upstream/README
similarity index 100%
rename from README
rename to upstream/README
diff --git a/upstream/autogen.sh b/upstream/autogen.sh
new file mode 100755
index 0000000..402acef
--- /dev/null
+++ b/upstream/autogen.sh
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+test -d /usr/share/autoconf-archive && AUTOCONF_ARCHIVE="-I /usr/share/autoconf-archive"
+libtoolize --force --copy
+aclocal $AUTOCONF_ARCHIVE
+autoheader
+automake --gnu --add-missing --copy
+autoconf
+# or just use autoreconf?
diff --git a/upstream/cnrun-1.1.13.tar.bz2 b/upstream/cnrun-1.1.13.tar.bz2
new file mode 100644
index 0000000..955e94a
Binary files /dev/null and b/upstream/cnrun-1.1.13.tar.bz2 differ
diff --git a/upstream/compile b/upstream/compile
new file mode 100755
index 0000000..531136b
--- /dev/null
+++ b/upstream/compile
@@ -0,0 +1,347 @@
+#! /bin/sh
+# Wrapper for compilers which do not understand '-c -o'.
+
+scriptversion=2012-10-14.11; # UTC
+
+# Copyright (C) 1999-2013 Free Software Foundation, Inc.
+# Written by Tom Tromey <tromey at cygnus.com>.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# This file is maintained in Automake, please report
+# bugs to <bug-automake at gnu.org> or send patches to
+# <automake-patches at gnu.org>.
+
+nl='
+'
+
+# We need space, tab and new line, in precisely that order. Quoting is
+# there to prevent tools from complaining about whitespace usage.
+IFS=" "" $nl"
+
+file_conv=
+
+# func_file_conv build_file lazy
+# Convert a $build file to $host form and store it in $file
+# Currently only supports Windows hosts. If the determined conversion
+# type is listed in (the comma separated) LAZY, no conversion will
+# take place.
+func_file_conv ()
+{
+ file=$1
+ case $file in
+ / | /[!/]*) # absolute file, and not a UNC file
+ if test -z "$file_conv"; then
+ # lazily determine how to convert abs files
+ case `uname -s` in
+ MINGW*)
+ file_conv=mingw
+ ;;
+ CYGWIN*)
+ file_conv=cygwin
+ ;;
+ *)
+ file_conv=wine
+ ;;
+ esac
+ fi
+ case $file_conv/,$2, in
+ *,$file_conv,*)
+ ;;
+ mingw/*)
+ file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'`
+ ;;
+ cygwin/*)
+ file=`cygpath -m "$file" || echo "$file"`
+ ;;
+ wine/*)
+ file=`winepath -w "$file" || echo "$file"`
+ ;;
+ esac
+ ;;
+ esac
+}
+
+# func_cl_dashL linkdir
+# Make cl look for libraries in LINKDIR
+func_cl_dashL ()
+{
+ func_file_conv "$1"
+ if test -z "$lib_path"; then
+ lib_path=$file
+ else
+ lib_path="$lib_path;$file"
+ fi
+ linker_opts="$linker_opts -LIBPATH:$file"
+}
+
+# func_cl_dashl library
+# Do a library search-path lookup for cl
+func_cl_dashl ()
+{
+ lib=$1
+ found=no
+ save_IFS=$IFS
+ IFS=';'
+ for dir in $lib_path $LIB
+ do
+ IFS=$save_IFS
+ if $shared && test -f "$dir/$lib.dll.lib"; then
+ found=yes
+ lib=$dir/$lib.dll.lib
+ break
+ fi
+ if test -f "$dir/$lib.lib"; then
+ found=yes
+ lib=$dir/$lib.lib
+ break
+ fi
+ if test -f "$dir/lib$lib.a"; then
+ found=yes
+ lib=$dir/lib$lib.a
+ break
+ fi
+ done
+ IFS=$save_IFS
+
+ if test "$found" != yes; then
+ lib=$lib.lib
+ fi
+}
+
+# func_cl_wrapper cl arg...
+# Adjust compile command to suit cl
+func_cl_wrapper ()
+{
+ # Assume a capable shell
+ lib_path=
+ shared=:
+ linker_opts=
+ for arg
+ do
+ if test -n "$eat"; then
+ eat=
+ else
+ case $1 in
+ -o)
+ # configure might choose to run compile as 'compile cc -o foo foo.c'.
+ eat=1
+ case $2 in
+ *.o | *.[oO][bB][jJ])
+ func_file_conv "$2"
+ set x "$@" -Fo"$file"
+ shift
+ ;;
+ *)
+ func_file_conv "$2"
+ set x "$@" -Fe"$file"
+ shift
+ ;;
+ esac
+ ;;
+ -I)
+ eat=1
+ func_file_conv "$2" mingw
+ set x "$@" -I"$file"
+ shift
+ ;;
+ -I*)
+ func_file_conv "${1#-I}" mingw
+ set x "$@" -I"$file"
+ shift
+ ;;
+ -l)
+ eat=1
+ func_cl_dashl "$2"
+ set x "$@" "$lib"
+ shift
+ ;;
+ -l*)
+ func_cl_dashl "${1#-l}"
+ set x "$@" "$lib"
+ shift
+ ;;
+ -L)
+ eat=1
+ func_cl_dashL "$2"
+ ;;
+ -L*)
+ func_cl_dashL "${1#-L}"
+ ;;
+ -static)
+ shared=false
+ ;;
+ -Wl,*)
+ arg=${1#-Wl,}
+ save_ifs="$IFS"; IFS=','
+ for flag in $arg; do
+ IFS="$save_ifs"
+ linker_opts="$linker_opts $flag"
+ done
+ IFS="$save_ifs"
+ ;;
+ -Xlinker)
+ eat=1
+ linker_opts="$linker_opts $2"
+ ;;
+ -*)
+ set x "$@" "$1"
+ shift
+ ;;
+ *.cc | *.CC | *.cxx | *.CXX | *.[cC]++)
+ func_file_conv "$1"
+ set x "$@" -Tp"$file"
+ shift
+ ;;
+ *.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO])
+ func_file_conv "$1" mingw
+ set x "$@" "$file"
+ shift
+ ;;
+ *)
+ set x "$@" "$1"
+ shift
+ ;;
+ esac
+ fi
+ shift
+ done
+ if test -n "$linker_opts"; then
+ linker_opts="-link$linker_opts"
+ fi
+ exec "$@" $linker_opts
+ exit 1
+}
+
+eat=
+
+case $1 in
+ '')
+ echo "$0: No command. Try '$0 --help' for more information." 1>&2
+ exit 1;
+ ;;
+ -h | --h*)
+ cat <<\EOF
+Usage: compile [--help] [--version] PROGRAM [ARGS]
+
+Wrapper for compilers which do not understand '-c -o'.
+Remove '-o dest.o' from ARGS, run PROGRAM with the remaining
+arguments, and rename the output as expected.
+
+If you are trying to build a whole package this is not the
+right script to run: please start by reading the file 'INSTALL'.
+
+Report bugs to <bug-automake at gnu.org>.
+EOF
+ exit $?
+ ;;
+ -v | --v*)
+ echo "compile $scriptversion"
+ exit $?
+ ;;
+ cl | *[/\\]cl | cl.exe | *[/\\]cl.exe )
+ func_cl_wrapper "$@" # Doesn't return...
+ ;;
+esac
+
+ofile=
+cfile=
+
+for arg
+do
+ if test -n "$eat"; then
+ eat=
+ else
+ case $1 in
+ -o)
+ # configure might choose to run compile as 'compile cc -o foo foo.c'.
+ # So we strip '-o arg' only if arg is an object.
+ eat=1
+ case $2 in
+ *.o | *.obj)
+ ofile=$2
+ ;;
+ *)
+ set x "$@" -o "$2"
+ shift
+ ;;
+ esac
+ ;;
+ *.c)
+ cfile=$1
+ set x "$@" "$1"
+ shift
+ ;;
+ *)
+ set x "$@" "$1"
+ shift
+ ;;
+ esac
+ fi
+ shift
+done
+
+if test -z "$ofile" || test -z "$cfile"; then
+ # If no '-o' option was seen then we might have been invoked from a
+ # pattern rule where we don't need one. That is ok -- this is a
+ # normal compilation that the losing compiler can handle. If no
+ # '.c' file was seen then we are probably linking. That is also
+ # ok.
+ exec "$@"
+fi
+
+# Name of file we expect compiler to create.
+cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'`
+
+# Create the lock directory.
+# Note: use '[/\\:.-]' here to ensure that we don't use the same name
+# that we are using for the .o file. Also, base the name on the expected
+# object file name, since that is what matters with a parallel build.
+lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d
+while true; do
+ if mkdir "$lockdir" >/dev/null 2>&1; then
+ break
+ fi
+ sleep 1
+done
+# FIXME: race condition here if user kills between mkdir and trap.
+trap "rmdir '$lockdir'; exit 1" 1 2 15
+
+# Run the compile.
+"$@"
+ret=$?
+
+if test -f "$cofile"; then
+ test "$cofile" = "$ofile" || mv "$cofile" "$ofile"
+elif test -f "${cofile}bj"; then
+ test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile"
+fi
+
+rmdir "$lockdir"
+exit $ret
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:
diff --git a/configure.in b/upstream/configure.ac
similarity index 98%
rename from configure.in
rename to upstream/configure.ac
index 802f617..7a32637 100644
--- a/configure.in
+++ b/upstream/configure.ac
@@ -1,6 +1,6 @@
AC_COPYRIGHT([Copyright (c) 2008-12 Andrei Zavada <johnhommer at gmail.com>])
-AC_INIT([cnrun], [1.1.13], [johnhommer at gmail.com])
+AC_INIT([cnrun], [1.1.14], [johnhommer at gmail.com])
AC_CONFIG_SRCDIR([src/runner-main.cc])
AC_CONFIG_MACRO_DIR([m4])
AC_PREREQ(2.61)
diff --git a/doc/Makefile.am b/upstream/doc/Makefile.am
similarity index 100%
rename from doc/Makefile.am
rename to upstream/doc/Makefile.am
diff --git a/doc/README b/upstream/doc/README
similarity index 100%
rename from doc/README
rename to upstream/doc/README
diff --git a/doc/examples/ratiocoding/ORNa.x1000.in b/upstream/doc/examples/ratiocoding/ORNa.x1000.in
similarity index 100%
rename from doc/examples/ratiocoding/ORNa.x1000.in
rename to upstream/doc/examples/ratiocoding/ORNa.x1000.in
diff --git a/doc/examples/ratiocoding/ORNb.x1000.in b/upstream/doc/examples/ratiocoding/ORNb.x1000.in
similarity index 100%
rename from doc/examples/ratiocoding/ORNb.x1000.in
rename to upstream/doc/examples/ratiocoding/ORNb.x1000.in
diff --git a/doc/examples/ratiocoding/PN.0.sxf.target b/upstream/doc/examples/ratiocoding/PN.0.sxf.target
similarity index 100%
rename from doc/examples/ratiocoding/PN.0.sxf.target
rename to upstream/doc/examples/ratiocoding/PN.0.sxf.target
diff --git a/doc/examples/ratiocoding/batch b/upstream/doc/examples/ratiocoding/batch
similarity index 100%
rename from doc/examples/ratiocoding/batch
rename to upstream/doc/examples/ratiocoding/batch
diff --git a/doc/examples/ratiocoding/m.nml b/upstream/doc/examples/ratiocoding/m.nml
similarity index 100%
rename from doc/examples/ratiocoding/m.nml
rename to upstream/doc/examples/ratiocoding/m.nml
diff --git a/doc/examples/ratiocoding/rational-plot-sdf-interactive b/upstream/doc/examples/ratiocoding/rational-plot-sdf-interactive
similarity index 100%
rename from doc/examples/ratiocoding/rational-plot-sdf-interactive
rename to upstream/doc/examples/ratiocoding/rational-plot-sdf-interactive
diff --git a/doc/examples/ratiocoding/rational-plot-sdf-static b/upstream/doc/examples/ratiocoding/rational-plot-sdf-static
similarity index 100%
rename from doc/examples/ratiocoding/rational-plot-sdf-static
rename to upstream/doc/examples/ratiocoding/rational-plot-sdf-static
diff --git a/doc/examples/ratiocoding/rational-plot-var b/upstream/doc/examples/ratiocoding/rational-plot-var
similarity index 100%
rename from doc/examples/ratiocoding/rational-plot-var
rename to upstream/doc/examples/ratiocoding/rational-plot-var
diff --git a/doc/examples/ratiocoding/script b/upstream/doc/examples/ratiocoding/script
similarity index 100%
rename from doc/examples/ratiocoding/script
rename to upstream/doc/examples/ratiocoding/script
diff --git a/man/.gitignore b/upstream/man/.gitignore
similarity index 100%
rename from man/.gitignore
rename to upstream/man/.gitignore
diff --git a/man/cnrun.1.in b/upstream/man/cnrun.1.in
similarity index 100%
rename from man/cnrun.1.in
rename to upstream/man/cnrun.1.in
diff --git a/man/hh-latency-estimator.1.in b/upstream/man/hh-latency-estimator.1.in
similarity index 100%
rename from man/hh-latency-estimator.1.in
rename to upstream/man/hh-latency-estimator.1.in
diff --git a/man/spike2sdf.1.in b/upstream/man/spike2sdf.1.in
similarity index 100%
rename from man/spike2sdf.1.in
rename to upstream/man/spike2sdf.1.in
diff --git a/man/varfold.1.in b/upstream/man/varfold.1.in
similarity index 100%
rename from man/varfold.1.in
rename to upstream/man/varfold.1.in
diff --git a/src/.gitignore b/upstream/src/.gitignore
similarity index 100%
rename from src/.gitignore
rename to upstream/src/.gitignore
diff --git a/src/Makefile.am b/upstream/src/Makefile.am
similarity index 100%
rename from src/Makefile.am
rename to upstream/src/Makefile.am
diff --git a/src/hh-latency-estimator.cc b/upstream/src/hh-latency-estimator.cc
similarity index 100%
rename from src/hh-latency-estimator.cc
rename to upstream/src/hh-latency-estimator.cc
diff --git a/src/libcn/Makefile.am b/upstream/src/libcn/Makefile.am
similarity index 100%
rename from src/libcn/Makefile.am
rename to upstream/src/libcn/Makefile.am
diff --git a/src/libcn/base-neuron.hh b/upstream/src/libcn/base-neuron.hh
similarity index 100%
rename from src/libcn/base-neuron.hh
rename to upstream/src/libcn/base-neuron.hh
diff --git a/src/libcn/base-synapse.hh b/upstream/src/libcn/base-synapse.hh
similarity index 100%
rename from src/libcn/base-synapse.hh
rename to upstream/src/libcn/base-synapse.hh
diff --git a/src/libcn/base-unit.cc b/upstream/src/libcn/base-unit.cc
similarity index 100%
rename from src/libcn/base-unit.cc
rename to upstream/src/libcn/base-unit.cc
diff --git a/src/libcn/base-unit.hh b/upstream/src/libcn/base-unit.hh
similarity index 100%
rename from src/libcn/base-unit.hh
rename to upstream/src/libcn/base-unit.hh
diff --git a/src/libcn/hosted-attr.hh b/upstream/src/libcn/hosted-attr.hh
similarity index 100%
rename from src/libcn/hosted-attr.hh
rename to upstream/src/libcn/hosted-attr.hh
diff --git a/src/libcn/hosted-neurons.cc b/upstream/src/libcn/hosted-neurons.cc
similarity index 100%
rename from src/libcn/hosted-neurons.cc
rename to upstream/src/libcn/hosted-neurons.cc
diff --git a/src/libcn/hosted-neurons.hh b/upstream/src/libcn/hosted-neurons.hh
similarity index 100%
rename from src/libcn/hosted-neurons.hh
rename to upstream/src/libcn/hosted-neurons.hh
diff --git a/src/libcn/hosted-synapses.cc b/upstream/src/libcn/hosted-synapses.cc
similarity index 100%
rename from src/libcn/hosted-synapses.cc
rename to upstream/src/libcn/hosted-synapses.cc
diff --git a/src/libcn/hosted-synapses.hh b/upstream/src/libcn/hosted-synapses.hh
similarity index 100%
rename from src/libcn/hosted-synapses.hh
rename to upstream/src/libcn/hosted-synapses.hh
diff --git a/src/libcn/integrate-base.hh b/upstream/src/libcn/integrate-base.hh
similarity index 100%
rename from src/libcn/integrate-base.hh
rename to upstream/src/libcn/integrate-base.hh
diff --git a/src/libcn/integrate-rk65.hh b/upstream/src/libcn/integrate-rk65.hh
similarity index 100%
rename from src/libcn/integrate-rk65.hh
rename to upstream/src/libcn/integrate-rk65.hh
diff --git a/src/libcn/model-cycle.cc b/upstream/src/libcn/model-cycle.cc
similarity index 100%
rename from src/libcn/model-cycle.cc
rename to upstream/src/libcn/model-cycle.cc
diff --git a/src/libcn/model-nmlio.cc b/upstream/src/libcn/model-nmlio.cc
similarity index 100%
rename from src/libcn/model-nmlio.cc
rename to upstream/src/libcn/model-nmlio.cc
diff --git a/src/libcn/model-struct.cc b/upstream/src/libcn/model-struct.cc
similarity index 100%
rename from src/libcn/model-struct.cc
rename to upstream/src/libcn/model-struct.cc
diff --git a/src/libcn/model.hh b/upstream/src/libcn/model.hh
similarity index 100%
rename from src/libcn/model.hh
rename to upstream/src/libcn/model.hh
diff --git a/src/libcn/mx-attr.hh b/upstream/src/libcn/mx-attr.hh
similarity index 100%
rename from src/libcn/mx-attr.hh
rename to upstream/src/libcn/mx-attr.hh
diff --git a/src/libcn/param-unit-literals.hh b/upstream/src/libcn/param-unit-literals.hh
similarity index 100%
rename from src/libcn/param-unit-literals.hh
rename to upstream/src/libcn/param-unit-literals.hh
diff --git a/src/libcn/sources.cc b/upstream/src/libcn/sources.cc
similarity index 100%
rename from src/libcn/sources.cc
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diff --git a/src/libcn/sources.hh b/upstream/src/libcn/sources.hh
similarity index 100%
rename from src/libcn/sources.hh
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diff --git a/src/libcn/standalone-attr.hh b/upstream/src/libcn/standalone-attr.hh
similarity index 100%
rename from src/libcn/standalone-attr.hh
rename to upstream/src/libcn/standalone-attr.hh
diff --git a/src/libcn/standalone-neurons.cc b/upstream/src/libcn/standalone-neurons.cc
similarity index 100%
rename from src/libcn/standalone-neurons.cc
rename to upstream/src/libcn/standalone-neurons.cc
diff --git a/src/libcn/standalone-neurons.hh b/upstream/src/libcn/standalone-neurons.hh
similarity index 100%
rename from src/libcn/standalone-neurons.hh
rename to upstream/src/libcn/standalone-neurons.hh
diff --git a/src/libcn/standalone-synapses.cc b/upstream/src/libcn/standalone-synapses.cc
similarity index 100%
rename from src/libcn/standalone-synapses.cc
rename to upstream/src/libcn/standalone-synapses.cc
diff --git a/src/libcn/standalone-synapses.hh b/upstream/src/libcn/standalone-synapses.hh
similarity index 100%
rename from src/libcn/standalone-synapses.hh
rename to upstream/src/libcn/standalone-synapses.hh
diff --git a/src/libcn/types.cc b/upstream/src/libcn/types.cc
similarity index 100%
rename from src/libcn/types.cc
rename to upstream/src/libcn/types.cc
diff --git a/src/libcn/types.hh b/upstream/src/libcn/types.hh
similarity index 100%
rename from src/libcn/types.hh
rename to upstream/src/libcn/types.hh
diff --git a/src/libstilton/Makefile.am b/upstream/src/libstilton/Makefile.am
similarity index 100%
rename from src/libstilton/Makefile.am
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diff --git a/src/libstilton/exprparser.cc b/upstream/src/libstilton/exprparser.cc
similarity index 100%
rename from src/libstilton/exprparser.cc
rename to upstream/src/libstilton/exprparser.cc
diff --git a/src/libstilton/exprparser.hh b/upstream/src/libstilton/exprparser.hh
similarity index 100%
rename from src/libstilton/exprparser.hh
rename to upstream/src/libstilton/exprparser.hh
diff --git a/src/libstilton/gcc-builtins.hh b/upstream/src/libstilton/gcc-builtins.hh
similarity index 100%
rename from src/libstilton/gcc-builtins.hh
rename to upstream/src/libstilton/gcc-builtins.hh
diff --git a/src/libstilton/log-facility.cc b/upstream/src/libstilton/log-facility.cc
similarity index 100%
rename from src/libstilton/log-facility.cc
rename to upstream/src/libstilton/log-facility.cc
diff --git a/src/libstilton/log-facility.hh b/upstream/src/libstilton/log-facility.hh
similarity index 100%
rename from src/libstilton/log-facility.hh
rename to upstream/src/libstilton/log-facility.hh
diff --git a/src/libstilton/pointaligned-s.cc b/upstream/src/libstilton/pointaligned-s.cc
similarity index 100%
rename from src/libstilton/pointaligned-s.cc
rename to upstream/src/libstilton/pointaligned-s.cc
diff --git a/src/libstilton/pointaligned-s.hh b/upstream/src/libstilton/pointaligned-s.hh
similarity index 100%
rename from src/libstilton/pointaligned-s.hh
rename to upstream/src/libstilton/pointaligned-s.hh
diff --git a/src/runner-interpreter-completions.cc b/upstream/src/runner-interpreter-completions.cc
similarity index 100%
rename from src/runner-interpreter-completions.cc
rename to upstream/src/runner-interpreter-completions.cc
diff --git a/src/runner-interpreter.cc b/upstream/src/runner-interpreter.cc
similarity index 100%
rename from src/runner-interpreter.cc
rename to upstream/src/runner-interpreter.cc
diff --git a/src/runner-main.cc b/upstream/src/runner-main.cc
similarity index 100%
rename from src/runner-main.cc
rename to upstream/src/runner-main.cc
diff --git a/src/runner.hh b/upstream/src/runner.hh
similarity index 100%
rename from src/runner.hh
rename to upstream/src/runner.hh
diff --git a/src/spike2sdf.cc b/upstream/src/spike2sdf.cc
similarity index 100%
rename from src/spike2sdf.cc
rename to upstream/src/spike2sdf.cc
diff --git a/src/varfold.cc b/upstream/src/varfold.cc
similarity index 100%
rename from src/varfold.cc
rename to upstream/src/varfold.cc
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