[med-svn] r14757 - in trunk/packages/infernal/tags: . 1.1~rc4-2/debian
Charles Plessy
plessy at alioth.debian.org
Mon Sep 23 02:27:26 UTC 2013
Author: plessy
Date: 2013-09-23 02:27:26 +0000 (Mon, 23 Sep 2013)
New Revision: 14757
Added:
trunk/packages/infernal/tags/1.1~rc4-2/
trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog
trunk/packages/infernal/tags/1.1~rc4-2/debian/control
Removed:
trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog
trunk/packages/infernal/tags/1.1~rc4-2/debian/control
Log:
[svn-buildpackage] Tagging infernal 1.1~rc4-2
Deleted: trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog
===================================================================
--- trunk/packages/infernal/trunk/debian/changelog 2013-09-23 00:37:18 UTC (rev 14754)
+++ trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog 2013-09-23 02:27:26 UTC (rev 14757)
@@ -1,125 +0,0 @@
-infernal (1.1~rc4-1.1) UNRELEASED; urgency=low
-
- * Team upload.
- * debian/control: removed myself from Uploaders.
-
- -- Charles Plessy <plessy at debian.org> Mon, 23 Sep 2013 09:36:44 +0900
-
-infernal (1.1~rc4-1) unstable; urgency=low
-
- * New upstream source
- * debian/source/format: 3.0 (quilt)
- * debian/control:
- - cme fix dpkg-control
- - debhelper 9
- - do not Build-Depend: quilt since source format implies this
- - The package builds only on architectures with SSE instructions.
- Quoting from build log on armel:
- configure: WARNING: Infernal 1.1 requires VMX or SSE capability for
- parallel instructions.
- configure: error: It appears your platform has neither and will not
- support Infernal.
- So all non i386/amd64 architectures were excluded
- Closes: #718742
- - use anonscm in Vcs fields
- * debian/rules:
- - remove redundant setting for flags which is handled by debhelper 9
- automatically
- - use xz compression
- * debian/copyright: DEP5
-
- -- Andreas Tille <tille at debian.org> Mon, 05 Aug 2013 12:06:12 +0200
-
-infernal (1.1~rc2-1) unstable; urgency=low
-
- * New upstream version - aiming to support RNAWorld BOINC project,
- with many thanks and regards to Yoyo!
- - cmscore no longer available
- * Bumped policy to 3.9.4 (no changes needed)
- - introduced hardening, with it build dep on
- dpkg-dev (>= 1.16.1~)
-
- -- Steffen Moeller <moeller at debian.org> Wed, 01 May 2013 20:24:17 +0200
-
-infernal (1.0.2-3) UNRELEASED; urgency=low
-
- [ Steffen Moeller ]
- * Extra fixed for lintian cleanliness (Steffen)
-
- [ Andreas Tille ]
- * debian/upstream:
- - do not specify DOI twice
- - Moved PMID to references
- * debian/control:
- - Fixed Vcs-Svn field
- - Standards-Version: 3.9.3 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Thu, 08 Mar 2012 11:44:54 +0100
-
-infernal (1.0.2-2) unstable; urgency=low
-
- * Series of mall fixes (Closes: #643407).
- * source/format 3.0
- * Policy to 3.9.2
- * added infernal-dbg
- * corrected upstream's email address
-
- -- Steffen Moeller <moeller at debian.org> Tue, 27 Sep 2011 15:48:27 +0200
-
-infernal (1.0.2-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 11:15:34 +0100
-
-infernal (1.0-2) unstable; urgency=low
-
- * Switch to CDBS to benefit from automagical config.{sub,guess}
- update (debian/rules). Closes: #550253.
- * debian/control:
- - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7.
- - Transferred bibliographic information from the package description
- to debian/upstream-metadata.yaml.
- - Clarified the short description of the documentation package.
- * Removed debian/infernal.dirs, not needed.
- * Edited README.source, removing mention that infernal is in contrib.
- * debian/copyright points at the version 3 of the GPL.
-
- -- Charles Plessy <plessy at debian.org> Sat, 10 Oct 2009 11:22:35 +0900
-
-infernal (1.0-1) unstable; urgency=low
-
- [ Charles Plessy ]
- * Updated my email address.
-
- [ Andreas Tille ]
- * New upstream version
- * debian/control:
- - Standards-Version: 3.8.3 (no changes needed)
- - Added myself to uploaders
- - s/Debian-Med/Debian Med/
- - Build-Depends: debhelper (>= 7.1) autotools-dev
- - Package: infernal-doc
- * debian/rules rewritten to make use of short dh
- * debian/copyright:
- - added myself to Copyright holders of debian/*
- - squid is not part of the upstream tarball anymore so this
- paragraph was deleted
- - files/Userguide.pdf: Copied comment about PDF = source from
- README.Debian
- * debian/infernal-doc.doc-base
- * debian/infernal.install: install src/{trcyk,truncyk_check} to
- /usr/bin
-
- * TODO: Convince upstream to release libeazel which is also used in
- hmmer as a separate library instead of copying the code into
- different projects
-
- -- Andreas Tille <tille at debian.org> Fri, 25 Sep 2009 15:17:22 +0200
-
-infernal (0.81-1) experimental; urgency=low
-
- * Initial release (Closes: #441840)
-
- -- Steffen Moeller <moeller at debian.org> Mon, 10 Sep 2007 23:15:37 +0200
-
Copied: trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog (from rev 14756, trunk/packages/infernal/trunk/debian/changelog)
===================================================================
--- trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog (rev 0)
+++ trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog 2013-09-23 02:27:26 UTC (rev 14757)
@@ -0,0 +1,126 @@
+infernal (1.1~rc4-2) unstable; urgency=low
+
+ * Team upload.
+ * Build-depends on libperl4-corelibs-perl (Closes: #724119).
+ * debian/control: removed myself from Uploaders.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 23 Sep 2013 10:57:17 +0900
+
+infernal (1.1~rc4-1) unstable; urgency=low
+
+ * New upstream source
+ * debian/source/format: 3.0 (quilt)
+ * debian/control:
+ - cme fix dpkg-control
+ - debhelper 9
+ - do not Build-Depend: quilt since source format implies this
+ - The package builds only on architectures with SSE instructions.
+ Quoting from build log on armel:
+ configure: WARNING: Infernal 1.1 requires VMX or SSE capability for
+ parallel instructions.
+ configure: error: It appears your platform has neither and will not
+ support Infernal.
+ So all non i386/amd64 architectures were excluded
+ Closes: #718742
+ - use anonscm in Vcs fields
+ * debian/rules:
+ - remove redundant setting for flags which is handled by debhelper 9
+ automatically
+ - use xz compression
+ * debian/copyright: DEP5
+
+ -- Andreas Tille <tille at debian.org> Mon, 05 Aug 2013 12:06:12 +0200
+
+infernal (1.1~rc2-1) unstable; urgency=low
+
+ * New upstream version - aiming to support RNAWorld BOINC project,
+ with many thanks and regards to Yoyo!
+ - cmscore no longer available
+ * Bumped policy to 3.9.4 (no changes needed)
+ - introduced hardening, with it build dep on
+ dpkg-dev (>= 1.16.1~)
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 01 May 2013 20:24:17 +0200
+
+infernal (1.0.2-3) UNRELEASED; urgency=low
+
+ [ Steffen Moeller ]
+ * Extra fixed for lintian cleanliness (Steffen)
+
+ [ Andreas Tille ]
+ * debian/upstream:
+ - do not specify DOI twice
+ - Moved PMID to references
+ * debian/control:
+ - Fixed Vcs-Svn field
+ - Standards-Version: 3.9.3 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Thu, 08 Mar 2012 11:44:54 +0100
+
+infernal (1.0.2-2) unstable; urgency=low
+
+ * Series of mall fixes (Closes: #643407).
+ * source/format 3.0
+ * Policy to 3.9.2
+ * added infernal-dbg
+ * corrected upstream's email address
+
+ -- Steffen Moeller <moeller at debian.org> Tue, 27 Sep 2011 15:48:27 +0200
+
+infernal (1.0.2-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 11:15:34 +0100
+
+infernal (1.0-2) unstable; urgency=low
+
+ * Switch to CDBS to benefit from automagical config.{sub,guess}
+ update (debian/rules). Closes: #550253.
+ * debian/control:
+ - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7.
+ - Transferred bibliographic information from the package description
+ to debian/upstream-metadata.yaml.
+ - Clarified the short description of the documentation package.
+ * Removed debian/infernal.dirs, not needed.
+ * Edited README.source, removing mention that infernal is in contrib.
+ * debian/copyright points at the version 3 of the GPL.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 10 Oct 2009 11:22:35 +0900
+
+infernal (1.0-1) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Updated my email address.
+
+ [ Andreas Tille ]
+ * New upstream version
+ * debian/control:
+ - Standards-Version: 3.8.3 (no changes needed)
+ - Added myself to uploaders
+ - s/Debian-Med/Debian Med/
+ - Build-Depends: debhelper (>= 7.1) autotools-dev
+ - Package: infernal-doc
+ * debian/rules rewritten to make use of short dh
+ * debian/copyright:
+ - added myself to Copyright holders of debian/*
+ - squid is not part of the upstream tarball anymore so this
+ paragraph was deleted
+ - files/Userguide.pdf: Copied comment about PDF = source from
+ README.Debian
+ * debian/infernal-doc.doc-base
+ * debian/infernal.install: install src/{trcyk,truncyk_check} to
+ /usr/bin
+
+ * TODO: Convince upstream to release libeazel which is also used in
+ hmmer as a separate library instead of copying the code into
+ different projects
+
+ -- Andreas Tille <tille at debian.org> Fri, 25 Sep 2009 15:17:22 +0200
+
+infernal (0.81-1) experimental; urgency=low
+
+ * Initial release (Closes: #441840)
+
+ -- Steffen Moeller <moeller at debian.org> Mon, 10 Sep 2007 23:15:37 +0200
+
Deleted: trunk/packages/infernal/tags/1.1~rc4-2/debian/control
===================================================================
--- trunk/packages/infernal/trunk/debian/control 2013-09-23 00:37:18 UTC (rev 14754)
+++ trunk/packages/infernal/tags/1.1~rc4-2/debian/control 2013-09-23 02:27:26 UTC (rev 14757)
@@ -1,60 +0,0 @@
-Source: infernal
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>,
- Andreas Tille <tille at debian.org>
-Section: science
-Priority: optional
-Build-Depends: dpkg-dev (>= 1.16.1~),
- debhelper (>= 9),
- autotools-dev
-Standards-Version: 3.9.4
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/infernal/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/infernal/trunk/
-Homepage: http://infernal.janelia.org/
-
-Package: infernal
-Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Description: inference of RNA secondary structural alignments
- Infernal ("INFERence of RNA ALignment") searches DNA sequence
- databases for RNA structure and sequence similarities. It provides an
- implementation of a special variant of profile stochastic context-free
- grammars called covariance models (CMs). A CM is like a sequence
- profile, but it scores a combination of sequence consensus and RNA
- secondary structure consensus, so in many cases, it is more capable of
- identifying RNA homologs that conserve their secondary structure more
- than their primary sequence.
- .
- The tool is an integral component of the Rfam database.
-
-Package: infernal-doc
-Architecture: all
-Section: doc
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Description: inference of RNA secondary structural alignments – documentation
- Infernal ("INFERence of RNA ALignment") searches DNA sequence
- databases for RNA structure and sequence similarities. It provides an
- implementation of a special case of profile stochastic context-free
- grammars called covariance models (CMs). A CM is like a sequence
- profile, but it scores a combination of sequence consensus and RNA
- secondary structure consensus, so in many cases, it is more capable of
- identifying RNA homologs that conserve their secondary structure more
- than their primary sequence.
- .
- This package provides the documentation which is shipped with the
- code of infernal.
-
-Package: infernal-dbg
-Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386
-Section: debug
-Priority: extra
-Depends: ${misc:Depends},
- infernal (= ${binary:Version})
-Description: debug information for infernal
- This package contains extra information to help the debugging of the
- infernal suite. The package is auto-generated. You may be asked
- by the upstream developer to install it to help the identification
- of a technical problem.
-
Copied: trunk/packages/infernal/tags/1.1~rc4-2/debian/control (from rev 14755, trunk/packages/infernal/trunk/debian/control)
===================================================================
--- trunk/packages/infernal/tags/1.1~rc4-2/debian/control (rev 0)
+++ trunk/packages/infernal/tags/1.1~rc4-2/debian/control 2013-09-23 02:27:26 UTC (rev 14757)
@@ -0,0 +1,61 @@
+Source: infernal
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: dpkg-dev (>= 1.16.1~),
+ debhelper (>= 9),
+ libperl4-corelibs-perl,
+ autotools-dev
+Standards-Version: 3.9.4
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/infernal/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/infernal/trunk/
+Homepage: http://infernal.janelia.org/
+
+Package: infernal
+Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: inference of RNA secondary structural alignments
+ Infernal ("INFERence of RNA ALignment") searches DNA sequence
+ databases for RNA structure and sequence similarities. It provides an
+ implementation of a special variant of profile stochastic context-free
+ grammars called covariance models (CMs). A CM is like a sequence
+ profile, but it scores a combination of sequence consensus and RNA
+ secondary structure consensus, so in many cases, it is more capable of
+ identifying RNA homologs that conserve their secondary structure more
+ than their primary sequence.
+ .
+ The tool is an integral component of the Rfam database.
+
+Package: infernal-doc
+Architecture: all
+Section: doc
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Description: inference of RNA secondary structural alignments – documentation
+ Infernal ("INFERence of RNA ALignment") searches DNA sequence
+ databases for RNA structure and sequence similarities. It provides an
+ implementation of a special case of profile stochastic context-free
+ grammars called covariance models (CMs). A CM is like a sequence
+ profile, but it scores a combination of sequence consensus and RNA
+ secondary structure consensus, so in many cases, it is more capable of
+ identifying RNA homologs that conserve their secondary structure more
+ than their primary sequence.
+ .
+ This package provides the documentation which is shipped with the
+ code of infernal.
+
+Package: infernal-dbg
+Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386
+Section: debug
+Priority: extra
+Depends: ${misc:Depends},
+ infernal (= ${binary:Version})
+Description: debug information for infernal
+ This package contains extra information to help the debugging of the
+ infernal suite. The package is auto-generated. You may be asked
+ by the upstream developer to install it to help the identification
+ of a technical problem.
+
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