[med-svn] r16549 - trunk/packages/python-biom-format/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-04-01 07:17:15 +0000 (Tue, 01 Apr 2014)
New Revision: 16549

Added:
   trunk/packages/python-biom-format/trunk/debian/doc-base
   trunk/packages/python-biom-format/trunk/debian/examples
   trunk/packages/python-biom-format/trunk/debian/install
   trunk/packages/python-biom-format/trunk/debian/linktrees
Removed:
   trunk/packages/python-biom-format/trunk/debian/docs
Modified:
   trunk/packages/python-biom-format/trunk/debian/control
   trunk/packages/python-biom-format/trunk/debian/copyright
   trunk/packages/python-biom-format/trunk/debian/rules
Log:
Provide doc-base input file; use linktrees


Modified: trunk/packages/python-biom-format/trunk/debian/control
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/control	2014-04-01 07:00:52 UTC (rev 16548)
+++ trunk/packages/python-biom-format/trunk/debian/control	2014-04-01 07:17:15 UTC (rev 16549)
@@ -4,6 +4,7 @@
 Section: python
 Priority: optional
 Build-Depends: debhelper (>= 9),
+               dh-linktree,
                python-all,
                python-numpy,
                help2man,

Modified: trunk/packages/python-biom-format/trunk/debian/copyright
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/copyright	2014-04-01 07:00:52 UTC (rev 16548)
+++ trunk/packages/python-biom-format/trunk/debian/copyright	2014-04-01 07:17:15 UTC (rev 16549)
@@ -1,7 +1,7 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: biom-format.org
 Upstream-Contact: Greg Caporaso <gregcaporaso at gmail.com>
-Source: http://biom-format.org/ -> links to Github download
+Source: https://pypi.python.org/pypi/biom-format/
 Files-Excluded:
     doc/_build
 

Added: trunk/packages/python-biom-format/trunk/debian/doc-base
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/doc-base	                        (rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/doc-base	2014-04-01 07:17:15 UTC (rev 16549)
@@ -0,0 +1,14 @@
+Document: python-biom-format
+Title: The Biological Observation Matrix (BIOM) format
+Author: Greg Caporaso <gregcaporaso at gmail.com>
+Abstract:  Biological Observation Matrix (BIOM) format
+ The BIOM file format (canonically pronounced biome) is designed to be a
+ general-use format for representing biological sample by observation
+ contingency tables. BIOM is a recognized standard for the Earth
+ Microbiome Project and is a Genomics Standards Consortium candidate
+ project.
+Section: Science/Biology
+
+Format: html
+Index: /usr/share/doc/python-biom-format/html/index.html
+Files: /usr/share/doc/python-biom-format/html/

Deleted: trunk/packages/python-biom-format/trunk/debian/docs
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/docs	2014-04-01 07:00:52 UTC (rev 16548)
+++ trunk/packages/python-biom-format/trunk/debian/docs	2014-04-01 07:17:15 UTC (rev 16549)
@@ -1,2 +0,0 @@
-examples
-doc/_build/singlehtml

Added: trunk/packages/python-biom-format/trunk/debian/examples
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/examples	2014-04-01 07:17:15 UTC (rev 16549)
@@ -0,0 +1 @@
+examples/*

Added: trunk/packages/python-biom-format/trunk/debian/install
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/install	                        (rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/install	2014-04-01 07:17:15 UTC (rev 16549)
@@ -0,0 +1 @@
+doc/_build/singlehtml/*	usr/share/doc/python-biom-format/html

Added: trunk/packages/python-biom-format/trunk/debian/linktrees
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/linktrees	                        (rev 0)
+++ trunk/packages/python-biom-format/trunk/debian/linktrees	2014-04-01 07:17:15 UTC (rev 16549)
@@ -0,0 +1,4 @@
+replace usr/share/sphinx/themes/basic/static/doctools.js	usr/share/doc/python-biom-format/html/_static/doctools.js
+replace usr/share/sphinx/themes/basic/static/jquery.js		usr/share/doc/python-biom-format/html/_static/jquery.js
+replace usr/share/sphinx/themes/basic/static/underscore.js	usr/share/doc/python-biom-format/html/_static/underscore.js
+replace usr/share/sphinx/themes/basic/static/websupport.js	usr/share/doc/python-biom-format/html/_static/websupport.js

Modified: trunk/packages/python-biom-format/trunk/debian/rules
===================================================================
--- trunk/packages/python-biom-format/trunk/debian/rules	2014-04-01 07:00:52 UTC (rev 16548)
+++ trunk/packages/python-biom-format/trunk/debian/rules	2014-04-01 07:17:15 UTC (rev 16549)
@@ -16,7 +16,7 @@
 pybuilddir := $(shell dpkg-architecture -qDEB_BUILD_ARCH_OS)-$(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
 
 %:
-	dh $@ --with python2
+	dh $@ --with python2 --with linktree
 
 override_dh_auto_build:
 	dh_auto_build
@@ -42,15 +42,6 @@
 	# give one binary a less generic name
 	mv $(bindir)/add_metadata $(bindir)/add_biom_metadata 
 
-override_dh_installdocs:
-	dh_installdocs
-	# Replace jquery.js and underscore.js with symlink, and fail if no file found
-	for jq in jquery underscore ; do \
-	    find debian/$(pkg) -name $$jq.js -print \
-	        -exec ln -sf /usr/share/javascript/$$jq/$$jq.js '{}' ';' | grep -q . ;\
-	done
-	echo "js:Depends=libjs-jquery,libjs-underscore" >> debian/$(pkg).substvars
-
 override_dh_installman:
 	dh_installman
 	# try to create man pages whereever possible