[med-svn] [probabel] branch master updated (646f05f -> a9e460a)

[Lennart Karssen]

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lckarssen-guest pushed a change to branch master
in repository probabel.

      from  646f05f   Move debian/upstream to debian/upstream/metadata
       new  c35814e   Imported Upstream version 0.4.2
       new  e9ad568   Imported Upstream version 0.4.3
       new  6a5e79a   Fixed conflicts from upload of upstream version 0.4.3.
       new  a02e058   Updated d/changelog to reflect new upstream release.
       new  a9e460a   Added TeXlive fonts package needed for building the manual to d/control.

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 checks/R-tests/Makefile.am             |   5 +
 checks/R-tests/Makefile.in             |   3 +-
 checks/R-tests/run_models_in_R_pacox.R |   5 +-
 checks/run_diff.sh                     |   2 +-
 configure                              |  20 +--
 configure.ac                           |   4 +-
 debian/changelog                       |   7 +
 debian/control                         |   1 +
 doc/ChangeLog                          |  12 +-
 doc/INSTALL                            |   3 +
 doc/ProbABEL_manual.tex                | 225 +++++++++++++++++++++++++++++----
 doc/pacoxph.1                          |   2 +-
 doc/palinear.1                         |   2 +-
 doc/palogist.1                         |   2 +-
 doc/probabel.1                         |   2 +-
 doc/probabel.pl.1                      |   2 +-
 src/command_line_settings.cpp          |  21 +++
 src/command_line_settings.h            |  21 +++
 src/coxph_data.cpp                     |  22 ++++
 src/coxph_data.h                       |  21 +++
 src/data.cpp                           |  23 ++++
 src/data.h                             |  21 +++
 src/eigen_mematrix.cpp                 |  32 ++++-
 src/eigen_mematrix.h                   |  23 ++++
 src/gendata.cpp                        |  39 +++++-
 src/gendata.h                          |  21 +++
 src/main.cpp                           |  24 ++++
 src/main_functions_dump.cpp            |  20 +++
 src/main_functions_dump.h              |  21 +++
 src/maskedmatrix.cpp                   |  21 +++
 src/maskedmatrix.h                     |  21 +++
 src/mematri1.h                         |  23 ++++
 src/mematrix.h                         |  23 ++++
 src/phedata.cpp                        |  23 ++++
 src/phedata.h                          |  21 +++
 src/reg1.cpp                           |  34 ++++-
 src/reg1.h                             |  24 ++++
 src/regdata.cpp                        |  22 ++++
 src/regdata.h                          |  21 +++
 src/usage.cpp                          |  27 +++-
 src/usage.h                            |  21 +++
 src/utilities.cpp                      |  22 ++++
 src/utilities.h                        |  21 +++
 43 files changed, 865 insertions(+), 65 deletions(-)

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