[med-svn] [bamtools] branch debian updated (f314c74 -> c61ec3a)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian
in repository bamtools.

      from  f314c74   Move debian/upstream to debian/upstream/metadata
       new  bfd618f   Imported Upstream version 2.3.0+dfsg
       new  1624450   Merge tag 'upstream/2.3.0+dfsg' into debian
       new  b358816   New upstream version
       new  11c5a1a   cme fix dpkg-control
       new  bf34682   Add license for debian/* files
       new  3f0a692   Remove dangling symlink
       new  87e9ad2   Adapt patches to new upstream version
       new  c61ec3a   Make use of d-shlibs

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                     |   4 +-
 debian/bamtools-2.2.0.1                            |   1 -
 debian/changelog                                   |   5 +-
 debian/control                                     |  33 +-
 debian/copyright                                   |   7 +
 debian/libbamtools-dev.install                     |   3 -
 debian/libbamtools2.2.0.install                    |   1 -
 debian/libbamtools2.2.0.lintian-overrides          |   2 -
 debian/libbamtools2.2.0.manpages                   |   2 -
 .../patches/0002-support-out-of-source-build.patch |  10 +-
 ...om-ExportHeader-function-use-install-inst.patch |  46 +--
 ...bamtools-to-lib.-Installing-libraries-to-.patch |  28 +-
 debian/patches/series                              |   2 +-
 debian/rules                                       |  17 +-
 docs/Doxyfile                                      |   2 +-
 src/api/CMakeLists.txt                             |  14 +-
 src/api/SamHeader.cpp                              |   1 +
 src/api/internal/bam/BamMultiReader_p.cpp          |   4 +-
 src/api/internal/index/CMakeLists.txt              |   4 +-
 src/api/internal/io/BamHttp_p.cpp                  | 394 ++++++++++++++-------
 src/api/internal/io/BamHttp_p.h                    |   8 +-
 src/api/internal/io/CMakeLists.txt                 |  22 +-
 src/api/internal/io/HttpHeader_p.h                 |   2 +-
 src/api/internal/io/RollingBuffer_p.cpp            |   6 +-
 src/api/internal/io/TcpSocket_p.cpp                |   6 +-
 src/api/internal/io/TcpSocket_p.h                  |   6 +-
 src/api/internal/sam/CMakeLists.txt                |   4 +-
 src/api/internal/utils/CMakeLists.txt              |   4 +-
 src/toolkit/CMakeLists.txt                         |   2 +-
 src/toolkit/bamtools_convert.cpp                   |   2 +-
 src/toolkit/bamtools_coverage.cpp                  |   3 +-
 src/toolkit/bamtools_filter.cpp                    |  28 +-
 src/toolkit/bamtools_random.cpp                    |  24 +-
 src/toolkit/bamtools_resolve.cpp                   |  20 +-
 src/toolkit/bamtools_split.cpp                     |  23 +-
 src/utils/CMakeLists.txt                           |   4 +-
 src/utils/bamtools_filter_engine.h                 |   5 +-
 37 files changed, 471 insertions(+), 278 deletions(-)
 delete mode 120000 debian/bamtools-2.2.0.1
 delete mode 100644 debian/libbamtools-dev.install
 delete mode 100644 debian/libbamtools2.2.0.install
 delete mode 100644 debian/libbamtools2.2.0.lintian-overrides
 delete mode 100644 debian/libbamtools2.2.0.manpages

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bamtools.git