[med-svn] [bamtools] branch master updated (faee5bd -> bfd618f)

[Andreas Tille]

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tille pushed a change to branch master
in repository bamtools.

      from  faee5bd   Imported Upstream version 2.2.3
       new  bfd618f   Imported Upstream version 2.3.0+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 CMakeLists.txt                            |   4 +-
 docs/Doxyfile                             |   2 +-
 src/api/CMakeLists.txt                    |  14 +-
 src/api/SamHeader.cpp                     |   1 +
 src/api/internal/bam/BamMultiReader_p.cpp |   4 +-
 src/api/internal/index/CMakeLists.txt     |   4 +-
 src/api/internal/io/BamHttp_p.cpp         | 394 ++++++++++++++++++++----------
 src/api/internal/io/BamHttp_p.h           |   8 +-
 src/api/internal/io/CMakeLists.txt        |  22 +-
 src/api/internal/io/HttpHeader_p.h        |   2 +-
 src/api/internal/io/RollingBuffer_p.cpp   |   6 +-
 src/api/internal/io/TcpSocket_p.cpp       |   6 +-
 src/api/internal/io/TcpSocket_p.h         |   6 +-
 src/api/internal/sam/CMakeLists.txt       |   4 +-
 src/api/internal/utils/CMakeLists.txt     |   4 +-
 src/toolkit/CMakeLists.txt                |   2 +-
 src/toolkit/bamtools_convert.cpp          |   2 +-
 src/toolkit/bamtools_coverage.cpp         |   3 +-
 src/toolkit/bamtools_filter.cpp           |  28 ++-
 src/toolkit/bamtools_random.cpp           |  24 +-
 src/toolkit/bamtools_resolve.cpp          |  20 +-
 src/toolkit/bamtools_split.cpp            |  23 +-
 src/utils/CMakeLists.txt                  |   4 +-
 src/utils/bamtools_filter_engine.h        |   5 +-
 24 files changed, 396 insertions(+), 196 deletions(-)

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