[med-svn] [probabel] branch upstream updated (7b2d0e3 -> 80a055f)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository probabel.

      from  7b2d0e3   Imported Upstream version 0.4.2
       new  80a055f   Imported Upstream version 0.4.3

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 checks/R-tests/Makefile.am             |    5 +
 checks/R-tests/Makefile.in             |    3 +-
 checks/R-tests/run_models_in_R_pacox.R |    5 +-
 checks/run_diff.sh                     |    2 +-
 configure                              |   20 +-
 configure.ac                           |    4 +-
 doc/ChangeLog                          |   12 +-
 doc/INSTALL                            |    3 +
 doc/Makefile.in                        |    4 +-
 doc/ProbABEL_manual.tex                |  225 ++++++-
 doc/pacoxph.1                          |    2 +-
 doc/palinear.1                         |    2 +-
 doc/palogist.1                         |    2 +-
 doc/probabel.1                         |    2 +-
 doc/probabel.pl.1                      |    2 +-
 src/Makefile.in                        | 1005 +++++++++++++++-----------------
 src/command_line_settings.cpp          |   21 +
 src/command_line_settings.h            |   21 +
 src/coxph_data.cpp                     |   22 +
 src/coxph_data.h                       |   21 +
 src/data.cpp                           |   23 +
 src/data.h                             |   21 +
 src/eigen_mematrix.cpp                 |   32 +-
 src/eigen_mematrix.h                   |   23 +
 src/gendata.cpp                        |   39 +-
 src/gendata.h                          |   21 +
 src/main.cpp                           |   24 +
 src/main_functions_dump.cpp            |   20 +
 src/main_functions_dump.h              |   21 +
 src/maskedmatrix.cpp                   |   21 +
 src/maskedmatrix.h                     |   21 +
 src/mematri1.h                         |   23 +
 src/mematrix.h                         |   23 +
 src/phedata.cpp                        |   23 +
 src/phedata.h                          |   21 +
 src/reg1.cpp                           |   34 +-
 src/reg1.h                             |   24 +
 src/regdata.cpp                        |   22 +
 src/regdata.h                          |   21 +
 src/usage.cpp                          |   27 +-
 src/usage.h                            |   21 +
 src/utilities.cpp                      |   22 +
 src/utilities.h                        |   21 +
 43 files changed, 1342 insertions(+), 589 deletions(-)

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