[med-svn] r16569 - in trunk/packages/vcftools/trunk/debian: . patches

[Thorsten Alteholz]

Author: alteholz
Date: 2014-04-04 17:26:10 +0000 (Fri, 04 Apr 2014)
New Revision: 16569

Modified:
   trunk/packages/vcftools/trunk/debian/changelog
   trunk/packages/vcftools/trunk/debian/control
   trunk/packages/vcftools/trunk/debian/patches/make.patch
   trunk/packages/vcftools/trunk/debian/rules
   trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides
Log:
new upstream version

Modified: trunk/packages/vcftools/trunk/debian/changelog
===================================================================
--- trunk/packages/vcftools/trunk/debian/changelog	2014-04-04 16:33:47 UTC (rev 16568)
+++ trunk/packages/vcftools/trunk/debian/changelog	2014-04-04 17:26:10 UTC (rev 16569)
@@ -1,3 +1,10 @@
+vcftools (0.1.12+dfsg-1) unstable; urgency=low
+
+  * new upstream version
+  * debian/control: standard bumped to 3.9.5 (no changes)
+
+ -- Thorsten Alteholz <debian at alteholz.de>  Fri, 04 Apr 2014 18:00:00 +0200
+
 vcftools (0.1.11+dfsg-1) unstable; urgency=low
 
   * new upstream version

Modified: trunk/packages/vcftools/trunk/debian/control
===================================================================
--- trunk/packages/vcftools/trunk/debian/control	2014-04-04 16:33:47 UTC (rev 16568)
+++ trunk/packages/vcftools/trunk/debian/control	2014-04-04 17:26:10 UTC (rev 16569)
@@ -2,7 +2,7 @@
 Section: science
 Priority: extra
 Build-Depends: debhelper (>= 9), zlib1g-dev
-Standards-Version: 3.9.4
+Standards-Version: 3.9.5
 Homepage: http://vcftools.sourceforge.net
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Thorsten Alteholz <debian at alteholz.de>,

Modified: trunk/packages/vcftools/trunk/debian/patches/make.patch
===================================================================
--- trunk/packages/vcftools/trunk/debian/patches/make.patch	2014-04-04 16:33:47 UTC (rev 16568)
+++ trunk/packages/vcftools/trunk/debian/patches/make.patch	2014-04-04 17:26:10 UTC (rev 16569)
@@ -1,15 +1,18 @@
-Description: do not use MAKEFLAGS
+Description: do not use MAKEFLAGS and not MANDIR
 Author: Thorsten Alteholz <debian at alteholz.de>
-Last-Update: 2011-07-03
-Index: vcftools-0.1.7/Makefile
+Last-Update: 2014-04-03
+Index: vcftools_0.1.12/Makefile
 ===================================================================
---- vcftools_0.1.7.org/Makefile	2011-07-04 15:22:33.000000000 +0200
-+++ vcftools_0.1.7/Makefile	2011-07-04 15:22:56.000000000 +0200
-@@ -22,7 +22,7 @@
+--- vcftools_0.1.12.orig/Makefile	2014-04-04 10:37:59.000000000 +0200
++++ vcftools_0.1.12/Makefile	2014-04-04 10:38:34.000000000 +0200
+@@ -25,9 +25,8 @@
+ 
  DIRS = cpp perl
  install:
- 	    @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
+-	    @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \
+-	    cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \
 -        for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done
++	    @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \
 +        for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done
  
  clean:

Modified: trunk/packages/vcftools/trunk/debian/rules
===================================================================
--- trunk/packages/vcftools/trunk/debian/rules	2014-04-04 16:33:47 UTC (rev 16568)
+++ trunk/packages/vcftools/trunk/debian/rules	2014-04-04 17:26:10 UTC (rev 16569)
@@ -2,11 +2,16 @@
 # -*- makefile -*-
 
 # Uncomment this to turn on verbose mode.
-# export DH_VERBOSE=1
+export DH_VERBOSE=1
 
 %:
 	dh $@ 
 
+override_dh_auto_build:
+	echo "hier bin ich"
+	MAKEFLAGS="" echo MAKEFLAGS is $(MAKEFLAGS)
+	MAKEFLAGS="" make 
+
 override_dh_clean:
 	dh_clean
 	# [ -r Makefile ] && make clean ?

Modified: trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides
===================================================================
--- trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides	2014-04-04 16:33:47 UTC (rev 16568)
+++ trunk/packages/vcftools/trunk/debian/vcftools.lintian-overrides	2014-04-04 17:26:10 UTC (rev 16569)
@@ -1,4 +1,5 @@
 # the compiler flags are used
 vcftools: hardening-no-fortify-functions usr/bin/vcftools
 # this string does not appear in sources, it is just some binary blob
-vcftools: spelling-error-in-binary usr/bin/vcftools teH the
+# fixed upstream in 0.1.12
+#vcftools: spelling-error-in-binary usr/bin/vcftools teH the