[med-svn] [picard-tools] 01/01: picard-tools (1.110-1) unstable; urgency=medium
Charles Plessy
plessy at moszumanska.debian.org
Sun Apr 6 02:31:54 UTC 2014
This is an automated email from the git hooks/post-receive script.
plessy pushed a commit to branch meta
in repository picard-tools.
commit 8e124054a652ff88be22d305f4b3d26c99ac67d3
Author: Charles Plessy <plessy at debian.org>
Date: Sun Apr 6 11:30:39 2014 +0900
picard-tools (1.110-1) unstable; urgency=medium
* Imported Upstream version 1.110.
* Normalised debian/control with config-model-edit.
* Refreshed patch ‘use_libjbzip2-java’.
-- Charles Plessy <plessy at debian.org> Sun, 06 Apr 2014 10:56:12 +0900
---
amd64.changes | 66 ++---
amd64.log | 797 ++++++++++++++++++++++++++++------------------------------
dsc | 42 ++--
upload | 14 +-
4 files changed, 446 insertions(+), 473 deletions(-)
diff --git a/amd64.changes b/amd64.changes
index 83a35de..306e4f0 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA512
Format: 1.8
-Date: Sat, 22 Mar 2014 11:35:22 +0900
+Date: Sun, 06 Apr 2014 10:56:12 +0900
Source: picard-tools
Binary: libsam-java picard-tools
Architecture: source all
-Version: 1.109-1
+Version: 1.110-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -15,42 +15,44 @@ Description:
libsam-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
- picard-tools (1.109-1) unstable; urgency=medium
+ picard-tools (1.110-1) unstable; urgency=medium
.
- * Imported Upstream versions 1.106, 1.107, 1.108 and 1.109.
+ * Imported Upstream version 1.110.
+ * Normalised debian/control with config-model-edit.
+ * Refreshed patch ‘use_libjbzip2-java’.
Checksums-Sha1:
- 8ff6eab22a24afcb9c6cf1383c6cf81acc83232a 2202 picard-tools_1.109-1.dsc
- 61be1bc86f3a05701dd6d9d9cb28975a36599109 13570976 picard-tools_1.109.orig.tar.xz
- 3626c637bb10e20cecece6fbdb9ab0916560526d 9408 picard-tools_1.109-1.debian.tar.xz
- eb5aec043019984791968b484d0ccda148569166 188880 libsam-java_1.109-1_all.deb
- 7f186e3258a3c4c55c8e8e465aee4c7bd51a8f2e 630116 picard-tools_1.109-1_all.deb
+ 2d5aba9ea4d71d0b48e8cb63e019531652b29a3d 2192 picard-tools_1.110-1.dsc
+ 45f2d830475f643f37301df8916aa6d2591584de 14109708 picard-tools_1.110.orig.tar.xz
+ 36a02761fe7bc86b484fa56f43df6ab54204e3e3 9476 picard-tools_1.110-1.debian.tar.xz
+ e1c70c77ea1d898f7ded942b6680f91625f1bab9 194930 libsam-java_1.110-1_all.deb
+ 9c8a8a29d01911d9487af2739d135b6643a195e8 645946 picard-tools_1.110-1_all.deb
Checksums-Sha256:
- 2a5cfe7889b188afab4514722fa71ab17bcc482162c72b4e53afe756604b5fd2 2202 picard-tools_1.109-1.dsc
- c38dc75987d37c9344ccc91a39718d965a6bd07b31d1014bbee3941d4d2b462c 13570976 picard-tools_1.109.orig.tar.xz
- 5c5c76cf54f89e839c892e6809a1f46c1cd91673f2bb3b0ea540dc3335256c5b 9408 picard-tools_1.109-1.debian.tar.xz
- 1bacb1e2753db90be81e71979c713e0276387070cc20078220e0981dce8e4d04 188880 libsam-java_1.109-1_all.deb
- 0b7c64c24a4f4a56ea2a58e6ce77291af2a55bc242c22d76caede02ba03e60eb 630116 picard-tools_1.109-1_all.deb
+ c8c15cd4543980679c113f1b6038d947ac76789f78d80c1891aac3e0768ab32d 2192 picard-tools_1.110-1.dsc
+ 5274fa042a9df7e45d6591140206ce4c6bc9c5f1f5a4abc69476dadd0d420300 14109708 picard-tools_1.110.orig.tar.xz
+ b4dbef1a65299d2bffb8903f2542583f0484012f01832f79df4538e2e3cf61e9 9476 picard-tools_1.110-1.debian.tar.xz
+ b8afa0bda489edfcbd22114b970c7f307a2dec6d48338bcb0a258b32eddec51c 194930 libsam-java_1.110-1_all.deb
+ 213eb16885ef1bfbc4c7e41d6ecaad9ed6d66e1549200961c0c843f571b958c0 645946 picard-tools_1.110-1_all.deb
Files:
- 056f098603a3474521580bb4662f3316 2202 science optional picard-tools_1.109-1.dsc
- 032b4a14db51ef27891a72a40853520c 13570976 science optional picard-tools_1.109.orig.tar.xz
- d3c6936156c995f8e9d9e32daa03de46 9408 science optional picard-tools_1.109-1.debian.tar.xz
- a9309eaf489f2374bd7276abafbb0732 188880 java optional libsam-java_1.109-1_all.deb
- e732191bcd63654f17eeae76997bdc4e 630116 science optional picard-tools_1.109-1_all.deb
+ fb16c3426d753b5350857ea6d56be57c 2192 science optional picard-tools_1.110-1.dsc
+ bc3a0bf301948efa9be5e113486fc23d 14109708 science optional picard-tools_1.110.orig.tar.xz
+ 4c34b437509bb0b0d3469097c287992e 9476 science optional picard-tools_1.110-1.debian.tar.xz
+ 5fd5f28266e41fece2edd1fd7a2c8f43 194930 java optional libsam-java_1.110-1_all.deb
+ 7b94a9d536f11d7ae7b5a24ee78fb6dc 645946 science optional picard-tools_1.110-1_all.deb
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diff --git a/amd64.log b/amd64.log
index 42ddecc..8ec65ba 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,41 +1,20 @@
-From plessy at debian.org Sat Mar 22 10:49:31 2014
-Return-path: <plessy at debian.org>
-Received: from x122082.ppp.asahi-net.or.jp ([122.249.122.82]
- helo=mail.plessy.org) by wuiet.debian.org with esmtp (Exim 4.80)
- (envelope-from <plessy at debian.org>) id 1WRJUW-0005eH-QY
- for logs at buildd.debian.org; Sat, 22 Mar 2014 10:49:30 +0000
-Received: from aqwa.igloo (aqwa.igloo [192.168.0.10])
- by mail.plessy.org (Postfix) with ESMTPSA id A1EB46407A
- for <logs at buildd.debian.org>; Sat, 22 Mar 2014 19:49:20 +0900 (JST)
-Date: Sat, 22 Mar 2014 19:49:15 +0900
-From: Charles Plessy <plessy at debian.org>
-To: logs at buildd.debian.org
-Subject: Log for attempted build of picard-tools_1.109-1 on amd64 (dist=sid)
-Message-ID: <20140322104915.GA14060 at aqwa.igloo>
-MIME-Version: 1.0
-Content-Type: text/plain; charset=utf-8
-Content-Disposition: inline
-Content-Transfer-Encoding: quoted-printable
-User-Agent: Mutt/1.5.21 (2010-09-15)
-Delivered-To: logs at buildd.debian.org
-
sbuild (Debian sbuild) 0.64.1 (13 Oct 2013) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ picard-tools 1.109-1 (amd64) 22 mars 2014 11:47 ║
+║ picard-tools 1.110-1 (amd64) 06 avril 2014 11:08 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: picard-tools
-Version: 1.109-1
-Source Version: 1.109-1
+Version: 1.110-1
+Source Version: 1.110-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/picard-tools-7cQ9PD/picard-tools-1.109' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/picard-tools-7cQ9PD' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-ff2a2cc5-e1d9-4f8b-bcaf-735f43871d77' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/picard-tools-t3osR1/picard-tools-1.110' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/picard-tools-t3osR1' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-6feaf607-19a0-476a-a740-93a2713cd2ff' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -59,14 +38,14 @@ Reading state information...
Local sources
─────────────
-picard-tools_1.109-1.dsc exists in .; copying to chroot
+picard-tools_1.110-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-KsGqcD/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-DB62_H/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -85,13 +64,13 @@ debconf: delaying package configuration, since apt-utils is not installed
Need to get 0 B/822 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
-(Reading database ... 11224 files and directories currently installed.)
+(Reading database ... 11228 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper (>= 0.25), python
-Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper (>= 0.25), python
-dpkg-deb: building package `sbuild-build-depends-picard-tools-dummy' in `/«BUILDDIR»/resolver-CwWj5k/apt_archive/sbuild-build-depends-picard-tools-dummy.deb'.
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper, python
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper, python
+dpkg-deb: building package `sbuild-build-depends-picard-tools-dummy' in `/«BUILDDIR»/resolver-8AjNDa/apt_archive/sbuild-build-depends-picard-tools-dummy.deb'.
OK
Reading package lists...
@@ -125,15 +104,15 @@ The following extra packages will be installed:
libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.3-minimal libpython3.3-stdlib libsm6 libsnappy1
- libsnappy1.0.3-java libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-6
- libthai-data libthai0 libtiff5 libudev1 libunistring0 libvorbis0a
- libvorbisenc2 libwayland-client0 libwayland-server0 libwrap0 libx11-6
- libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
- libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
- libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6
- libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1
- libxml-commons-external-java libxml-commons-resolver1.1-java libxml2
- libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 man-db
+ libsnappy1.0.3-java libsndfile1 libsqlite3-0 libssl1.0.0 libsystemd-id128-0
+ libsystemd-journal0 libtasn1-6 libthai-data libthai0 libtiff5 libudev1
+ libunistring0 libvorbis0a libvorbisenc2 libwayland-client0
+ libwayland-server0 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6
+ libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0
+ libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1
+ libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6
+ libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java
+ libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 man-db
mime-support openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openssl
po-debconf python python-minimal python2.7 python2.7-minimal python3
python3-minimal python3.3 python3.3-minimal shared-mime-info testng
@@ -186,92 +165,64 @@ The following NEW packages will be installed:
libpcsclite1 libpipeline1 libpixman-1-0 libpng12-0 libpulse0
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.3-minimal libpython3.3-stdlib libsm6 libsnappy1
- libsnappy1.0.3-java libsndfile1 libsqlite3-0 libssl1.0.0 libtasn1-6
- libthai-data libthai0 libtiff5 libudev1 libunistring0 libvorbis0a
- libvorbisenc2 libwayland-client0 libwayland-server0 libwrap0 libx11-6
- libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
- libxcb-present0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
- libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6
- libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1
- libxml-commons-external-java libxml-commons-resolver1.1-java libxml2
- libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 man-db
+ libsnappy1.0.3-java libsndfile1 libsqlite3-0 libssl1.0.0 libsystemd-id128-0
+ libsystemd-journal0 libtasn1-6 libthai-data libthai0 libtiff5 libudev1
+ libunistring0 libvorbis0a libvorbisenc2 libwayland-client0
+ libwayland-server0 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau6
+ libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0
+ libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1
+ libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6
+ libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java
+ libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 man-db
mime-support openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openssl
po-debconf python python-minimal python2.7 python2.7-minimal python3
python3-minimal python3.3 python3.3-minimal
sbuild-build-depends-picard-tools-dummy shared-mime-info testng tzdata-java
ucf x11-common
-0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded.
-Need to get 79.1 MB/111 MB of archives.
+0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded.
+Need to get 74.4 MB/111 MB of archives.
After this operation, 262 MB of additional disk space will be used.
-Get:1 http://ftp.jp.debian.org/debian/ unstable/main libudev1 amd64 204-8 [43.9 kB]
-Get:2 http://ftp.jp.debian.org/debian/ unstable/main libgcrypt11 amd64 1.5.3-4 [250 kB]
-Get:3 http://ftp.jp.debian.org/debian/ unstable/main libp11-kit0 amd64 0.20.2-4 [80.3 kB]
-Get:4 http://ftp.jp.debian.org/debian/ unstable/main libasyncns0 amd64 0.8-5 [12.5 kB]
-Get:5 http://ftp.jp.debian.org/debian/ unstable/main libglapi-mesa amd64 10.1.0-3 [50.5 kB]
-Get:6 http://ftp.jp.debian.org/debian/ unstable/main libllvm3.4 amd64 1:3.4-2 [6527 kB]
-Get:7 http://ftp.jp.debian.org/debian/ unstable/main libgbm1 amd64 10.1.0-3 [534 kB]
-Get:8 http://ftp.jp.debian.org/debian/ unstable/main libegl1-mesa amd64 10.1.0-3 [88.3 kB]
-Get:9 http://ftp.jp.debian.org/debian/ unstable/main fontconfig-config all 2.11.0-5 [273 kB]
-Get:10 http://ftp.jp.debian.org/debian/ unstable/main libfontconfig1 amd64 2.11.0-5 [327 kB]
-Get:11 http://ftp.jp.debian.org/debian/ unstable/main libxcb-dri3-0 amd64 1.10-2 [10.6 kB]
-Get:12 http://ftp.jp.debian.org/debian/ unstable/main libxcb-present0 amd64 1.10-2 [10.7 kB]
-Get:13 http://ftp.jp.debian.org/debian/ unstable/main libxcb-sync1 amd64 1.10-2 [13.6 kB]
-Get:14 http://ftp.jp.debian.org/debian/ unstable/main libxshmfence1 amd64 1.1-2 [6452 B]
-Get:15 http://ftp.jp.debian.org/debian/ unstable/main libgl1-mesa-glx amd64 10.1.0-3 [144 kB]
-Get:16 http://ftp.jp.debian.org/debian/ unstable/main libtiff5 amd64 4.0.3-8 [209 kB]
-Get:17 http://ftp.jp.debian.org/debian/ unstable/main libgdk-pixbuf2.0-common all 2.30.6-1 [294 kB]
-Get:18 http://ftp.jp.debian.org/debian/ unstable/main libgdk-pixbuf2.0-0 amd64 2.30.6-1 [162 kB]
-Get:19 http://ftp.jp.debian.org/debian/ unstable/main libdbus-1-3 amd64 1.8.0-2 [161 kB]
-Get:20 http://ftp.jp.debian.org/debian/ unstable/main libcups2 amd64 1.7.1-10 [275 kB]
-Get:21 http://ftp.jp.debian.org/debian/ unstable/main fontconfig amd64 2.11.0-5 [402 kB]
-Get:22 http://ftp.jp.debian.org/debian/ unstable/main libpango-1.0-0 amd64 1.36.3-1 [281 kB]
-Get:23 http://ftp.jp.debian.org/debian/ unstable/main libgraphite2-3 amd64 1.2.4-2 [57.4 kB]
-Get:24 http://ftp.jp.debian.org/debian/ unstable/main libharfbuzz0b amd64 0.9.26-4 [448 kB]
-Get:25 http://ftp.jp.debian.org/debian/ unstable/main libpangoft2-1.0-0 amd64 1.36.3-1 [205 kB]
-Get:26 http://ftp.jp.debian.org/debian/ unstable/main libpangocairo-1.0-0 amd64 1.36.3-1 [192 kB]
-Get:27 http://ftp.jp.debian.org/debian/ unstable/main shared-mime-info amd64 1.2-1 [641 kB]
-Get:28 http://ftp.jp.debian.org/debian/ unstable/main ca-certificates all 20140223 [190 kB]
-Get:29 http://ftp.jp.debian.org/debian/ unstable/main libnspr4 amd64 2:4.10.4-1 [115 kB]
-Get:30 http://ftp.jp.debian.org/debian/ unstable/main libnss3 amd64 2:3.16-1 [1095 kB]
-Get:31 http://ftp.jp.debian.org/debian/ unstable/main tzdata-java all 2014a-1 [82.3 kB]
-Get:32 http://ftp.jp.debian.org/debian/ unstable/main java-common all 0.51 [135 kB]
-Get:33 http://ftp.jp.debian.org/debian/ unstable/main liblcms2-2 amd64 2.5-1 [134 kB]
-Get:34 http://ftp.jp.debian.org/debian/ unstable/main libpcsclite1 amd64 1.8.11-1 [55.2 kB]
-Get:35 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jre-headless amd64 7u51-2.4.5-2 [39.3 MB]
-Get:36 http://ftp.jp.debian.org/debian/ unstable/main default-jre-headless amd64 2:1.7-51 [8896 B]
-Get:37 http://ftp.jp.debian.org/debian/ unstable/main libgif4 amd64 4.1.6-11 [39.8 kB]
-Get:38 http://ftp.jp.debian.org/debian/ unstable/main x11-common all 1:7.7+6 [287 kB]
-Get:39 http://ftp.jp.debian.org/debian/ unstable/main libsndfile1 amd64 1.0.25-9 [213 kB]
-Get:40 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jre amd64 7u51-2.4.5-2 [184 kB]
-Get:41 http://ftp.jp.debian.org/debian/ unstable/main default-jre amd64 2:1.7-51 [946 B]
-Get:42 http://ftp.jp.debian.org/debian/ unstable/main libpython3.3-minimal amd64 3.3.5~rc2-1 [424 kB]
-Get:43 http://ftp.jp.debian.org/debian/ unstable/main libpython3.3-stdlib amd64 3.3.5~rc2-1 [2000 kB]
-Get:44 http://ftp.jp.debian.org/debian/ unstable/main python3.3-minimal amd64 3.3.5~rc2-1 [1402 kB]
-Get:45 http://ftp.jp.debian.org/debian/ unstable/main ant all 1.9.3-2 [1877 kB]
-Get:46 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jdk amd64 7u51-2.4.5-2 [16.0 MB]
-Get:47 http://ftp.jp.debian.org/debian/ unstable/main default-jdk amd64 2:1.7-51 [942 B]
-Get:48 http://ftp.jp.debian.org/debian/ unstable/main python3.3 amd64 3.3.5~rc2-1 [164 kB]
-Get:49 http://ftp.jp.debian.org/debian/ unstable/main python3-minimal amd64 3.3.4-1 [34.1 kB]
-Get:50 http://ftp.jp.debian.org/debian/ unstable/main libpython3-stdlib amd64 3.3.4-1 [17.7 kB]
-Get:51 http://ftp.jp.debian.org/debian/ unstable/main python3 amd64 3.3.4-1 [20.8 kB]
-Get:52 http://ftp.jp.debian.org/debian/ unstable/main devscripts amd64 2.14.1 [875 kB]
-Get:53 http://ftp.jp.debian.org/debian/ unstable/main libatinject-jsr330-api-java all 1.0+ds1-1 [22.6 kB]
-Get:54 http://ftp.jp.debian.org/debian/ unstable/main libbsh-java all 2.0b4-15 [266 kB]
-Get:55 http://ftp.jp.debian.org/debian/ unstable/main libcglib-java all 2.2.2+dfsg2-1 [696 kB]
-Get:56 http://ftp.jp.debian.org/debian/ unstable/main libcofoja-java all 1.1-r150-1 [407 kB]
-Get:57 http://ftp.jp.debian.org/debian/ unstable/main libaopalliance-java all 20070526-5 [9192 B]
-Get:58 http://ftp.jp.debian.org/debian/ unstable/main libguice-java all 3.0-3 [488 kB]
-Get:59 http://ftp.jp.debian.org/debian/ unstable/main libjcommander-java all 1.32-1 [57.8 kB]
-Get:60 http://ftp.jp.debian.org/debian/ unstable/main testng all 6.8.8-1 [786 kB]
+Get:1 http://ftp.jp.debian.org/debian/ unstable/main libsqlite3-0 amd64 3.8.4.1-1 [408 kB]
+Get:2 http://ftp.jp.debian.org/debian/ unstable/main libglib2.0-0 amd64 2.40.0-2 [2403 kB]
+Get:3 http://ftp.jp.debian.org/debian/ unstable/main libatk1.0-data all 2.12.0-1 [179 kB]
+Get:4 http://ftp.jp.debian.org/debian/ unstable/main libatk1.0-0 amd64 2.12.0-1 [91.0 kB]
+Get:5 http://ftp.jp.debian.org/debian/ unstable/main libglapi-mesa amd64 10.1.0-5 [50.8 kB]
+Get:6 http://ftp.jp.debian.org/debian/ unstable/main libgbm1 amd64 10.1.0-5 [534 kB]
+Get:7 http://ftp.jp.debian.org/debian/ unstable/main libegl1-mesa amd64 10.1.0-5 [88.3 kB]
+Get:8 http://ftp.jp.debian.org/debian/ unstable/main libgl1-mesa-glx amd64 10.1.0-5 [144 kB]
+Get:9 http://ftp.jp.debian.org/debian/ unstable/main libgtk2.0-common all 2.24.23-1 [3148 kB]
+Get:10 http://ftp.jp.debian.org/debian/ unstable/main libdbus-1-3 amd64 1.8.0-3 [161 kB]
+Get:11 http://ftp.jp.debian.org/debian/ unstable/main libcups2 amd64 1.7.1-12 [275 kB]
+Get:12 http://ftp.jp.debian.org/debian/ unstable/main libharfbuzz0b amd64 0.9.27-1 [450 kB]
+Get:13 http://ftp.jp.debian.org/debian/ unstable/main libgtk2.0-0 amd64 2.24.23-1 [2258 kB]
+Get:14 http://ftp.jp.debian.org/debian/ unstable/main ca-certificates all 20140325 [193 kB]
+Get:15 http://ftp.jp.debian.org/debian/ unstable/main ca-certificates-java all 20140324 [13.7 kB]
+Get:16 http://ftp.jp.debian.org/debian/ unstable/main tzdata-java all 2014b-1 [82.5 kB]
+Get:17 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jre-headless amd64 7u51-2.4.6-1 [39.4 MB]
+Get:18 http://ftp.jp.debian.org/debian/ unstable/main x11-common all 1:7.7+7 [287 kB]
+Get:19 http://ftp.jp.debian.org/debian/ unstable/main libsystemd-id128-0 amd64 204-8 [24.0 kB]
+Get:20 http://ftp.jp.debian.org/debian/ unstable/main libsystemd-journal0 amd64 204-8 [60.1 kB]
+Get:21 http://ftp.jp.debian.org/debian/ unstable/main libpulse0 amd64 5.0-1 [250 kB]
+Get:22 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jre amd64 7u51-2.4.6-1 [185 kB]
+Get:23 http://ftp.jp.debian.org/debian/ unstable/main libpython3.3-minimal amd64 3.3.5-1 [424 kB]
+Get:24 http://ftp.jp.debian.org/debian/ unstable/main libpython3.3-stdlib amd64 3.3.5-1 [2000 kB]
+Get:25 http://ftp.jp.debian.org/debian/ unstable/main libpython2.7-minimal amd64 2.7.6-8 [349 kB]
+Get:26 http://ftp.jp.debian.org/debian/ unstable/main python2.7-minimal amd64 2.7.6-8 [1227 kB]
+Get:27 http://ftp.jp.debian.org/debian/ unstable/main python3.3-minimal amd64 3.3.5-1 [1395 kB]
+Get:28 http://ftp.jp.debian.org/debian/ unstable/main libpython2.7-stdlib amd64 2.7.6-8 [1872 kB]
+Get:29 http://ftp.jp.debian.org/debian/ unstable/main python2.7 amd64 2.7.6-8 [239 kB]
+Get:30 http://ftp.jp.debian.org/debian/ unstable/main openjdk-7-jdk amd64 7u51-2.4.6-1 [16.0 MB]
+Get:31 http://ftp.jp.debian.org/debian/ unstable/main python3.3 amd64 3.3.5-1 [164 kB]
+Get:32 http://ftp.jp.debian.org/debian/ unstable/main javahelper all 0.46 [83.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 79.1 MB in 2min 6s (624 kB/s)
+Fetched 74.4 MB in 1min 21s (911 kB/s)
Selecting previously unselected package libncursesw5:amd64.
-(Reading database ... 11224 files and directories currently installed.)
+(Reading database ... 11228 files and directories currently installed.)
Preparing to unpack .../libncursesw5_5.9+20140118-1_amd64.deb ...
Unpacking libncursesw5:amd64 (5.9+20140118-1) ...
Selecting previously unselected package libpipeline1:amd64.
-Preparing to unpack .../libpipeline1_1.2.6-2_amd64.deb ...
-Unpacking libpipeline1:amd64 (1.2.6-2) ...
+Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ...
+Unpacking libpipeline1:amd64 (1.3.0-1) ...
Selecting previously unselected package libssl1.0.0:amd64.
Preparing to unpack .../libssl1.0.0_1.0.1f-1_amd64.deb ...
Unpacking libssl1.0.0:amd64 (1.0.1f-1) ...
@@ -297,8 +248,8 @@ Selecting previously unselected package libgcrypt11:amd64.
Preparing to unpack .../libgcrypt11_1.5.3-4_amd64.deb ...
Unpacking libgcrypt11:amd64 (1.5.3-4) ...
Selecting previously unselected package libffi6:amd64.
-Preparing to unpack .../libffi6_3.0.13-12_amd64.deb ...
-Unpacking libffi6:amd64 (3.0.13-12) ...
+Preparing to unpack .../libffi6_3.1~rc1+r3.0.13-12_amd64.deb ...
+Unpacking libffi6:amd64 (3.1~rc1+r3.0.13-12) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../libp11-kit0_0.20.2-4_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.20.2-4) ...
@@ -327,8 +278,8 @@ Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../libmagic1_1%3a5.17-1_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.17-1) ...
Selecting previously unselected package libsqlite3-0:amd64.
-Preparing to unpack .../libsqlite3-0_3.8.3.1-1_amd64.deb ...
-Unpacking libsqlite3-0:amd64 (3.8.3.1-1) ...
+Preparing to unpack .../libsqlite3-0_3.8.4.1-1_amd64.deb ...
+Unpacking libsqlite3-0:amd64 (3.8.4.1-1) ...
Selecting previously unselected package libwrap0:amd64.
Preparing to unpack .../libwrap0_7.6.q-25_amd64.deb ...
Unpacking libwrap0:amd64 (7.6.q-25) ...
@@ -345,20 +296,20 @@ Selecting previously unselected package libasyncns0:amd64.
Preparing to unpack .../libasyncns0_0.8-5_amd64.deb ...
Unpacking libasyncns0:amd64 (0.8-5) ...
Selecting previously unselected package libglib2.0-0:amd64.
-Preparing to unpack .../libglib2.0-0_2.38.2-5_amd64.deb ...
-Unpacking libglib2.0-0:amd64 (2.38.2-5) ...
+Preparing to unpack .../libglib2.0-0_2.40.0-2_amd64.deb ...
+Unpacking libglib2.0-0:amd64 (2.40.0-2) ...
Selecting previously unselected package libatk1.0-data.
-Preparing to unpack .../libatk1.0-data_2.10.0-2_all.deb ...
-Unpacking libatk1.0-data (2.10.0-2) ...
+Preparing to unpack .../libatk1.0-data_2.12.0-1_all.deb ...
+Unpacking libatk1.0-data (2.12.0-1) ...
Selecting previously unselected package libatk1.0-0:amd64.
-Preparing to unpack .../libatk1.0-0_2.10.0-2_amd64.deb ...
-Unpacking libatk1.0-0:amd64 (2.10.0-2) ...
+Preparing to unpack .../libatk1.0-0_2.12.0-1_amd64.deb ...
+Unpacking libatk1.0-0:amd64 (2.12.0-1) ...
Selecting previously unselected package libdrm2:amd64.
Preparing to unpack .../libdrm2_2.4.52-1_amd64.deb ...
Unpacking libdrm2:amd64 (2.4.52-1) ...
Selecting previously unselected package libglapi-mesa:amd64.
-Preparing to unpack .../libglapi-mesa_10.1.0-3_amd64.deb ...
-Unpacking libglapi-mesa:amd64 (10.1.0-3) ...
+Preparing to unpack .../libglapi-mesa_10.1.0-5_amd64.deb ...
+Unpacking libglapi-mesa:amd64 (10.1.0-5) ...
Selecting previously unselected package libllvm3.4:amd64.
Preparing to unpack .../libllvm3.4_1%3a3.4-2_amd64.deb ...
Unpacking libllvm3.4:amd64 (1:3.4-2) ...
@@ -381,8 +332,8 @@ Selecting previously unselected package libxcb-dri2-0:amd64.
Preparing to unpack .../libxcb-dri2-0_1.10-2_amd64.deb ...
Unpacking libxcb-dri2-0:amd64 (1.10-2) ...
Selecting previously unselected package libgbm1:amd64.
-Preparing to unpack .../libgbm1_10.1.0-3_amd64.deb ...
-Unpacking libgbm1:amd64 (10.1.0-3) ...
+Preparing to unpack .../libgbm1_10.1.0-5_amd64.deb ...
+Unpacking libgbm1:amd64 (10.1.0-5) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.2-1_all.deb ...
Unpacking libx11-data (2:1.6.2-1) ...
@@ -402,8 +353,8 @@ Selecting previously unselected package libxcb-xfixes0:amd64.
Preparing to unpack .../libxcb-xfixes0_1.10-2_amd64.deb ...
Unpacking libxcb-xfixes0:amd64 (1.10-2) ...
Selecting previously unselected package libegl1-mesa:amd64.
-Preparing to unpack .../libegl1-mesa_10.1.0-3_amd64.deb ...
-Unpacking libegl1-mesa:amd64 (10.1.0-3) ...
+Preparing to unpack .../libegl1-mesa_10.1.0-5_amd64.deb ...
+Unpacking libegl1-mesa:amd64 (10.1.0-5) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.1.0-4_amd64.deb ...
Unpacking libexpat1:amd64 (2.1.0-4) ...
@@ -454,8 +405,8 @@ Selecting previously unselected package libxxf86vm1:amd64.
Preparing to unpack .../libxxf86vm1_1%3a1.1.3-1_amd64.deb ...
Unpacking libxxf86vm1:amd64 (1:1.1.3-1) ...
Selecting previously unselected package libgl1-mesa-glx:amd64.
-Preparing to unpack .../libgl1-mesa-glx_10.1.0-3_amd64.deb ...
-Unpacking libgl1-mesa-glx:amd64 (10.1.0-3) ...
+Preparing to unpack .../libgl1-mesa-glx_10.1.0-5_amd64.deb ...
+Unpacking libgl1-mesa-glx:amd64 (10.1.0-5) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../libpixman-1-0_0.32.4-1_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.32.4-1) ...
@@ -487,8 +438,8 @@ Selecting previously unselected package libgdk-pixbuf2.0-0:amd64.
Preparing to unpack .../libgdk-pixbuf2.0-0_2.30.6-1_amd64.deb ...
Unpacking libgdk-pixbuf2.0-0:amd64 (2.30.6-1) ...
Selecting previously unselected package libgtk2.0-common.
-Preparing to unpack .../libgtk2.0-common_2.24.22-1_all.deb ...
-Unpacking libgtk2.0-common (2.24.22-1) ...
+Preparing to unpack .../libgtk2.0-common_2.24.23-1_all.deb ...
+Unpacking libgtk2.0-common (2.24.23-1) ...
Selecting previously unselected package libavahi-common-data:amd64.
Preparing to unpack .../libavahi-common-data_0.6.31-4_amd64.deb ...
Unpacking libavahi-common-data:amd64 (0.6.31-4) ...
@@ -496,14 +447,14 @@ Selecting previously unselected package libavahi-common3:amd64.
Preparing to unpack .../libavahi-common3_0.6.31-4_amd64.deb ...
Unpacking libavahi-common3:amd64 (0.6.31-4) ...
Selecting previously unselected package libdbus-1-3:amd64.
-Preparing to unpack .../libdbus-1-3_1.8.0-2_amd64.deb ...
-Unpacking libdbus-1-3:amd64 (1.8.0-2) ...
+Preparing to unpack .../libdbus-1-3_1.8.0-3_amd64.deb ...
+Unpacking libdbus-1-3:amd64 (1.8.0-3) ...
Selecting previously unselected package libavahi-client3:amd64.
Preparing to unpack .../libavahi-client3_0.6.31-4_amd64.deb ...
Unpacking libavahi-client3:amd64 (0.6.31-4) ...
Selecting previously unselected package libcups2:amd64.
-Preparing to unpack .../libcups2_1.7.1-10_amd64.deb ...
-Unpacking libcups2:amd64 (1.7.1-10) ...
+Preparing to unpack .../libcups2_1.7.1-12_amd64.deb ...
+Unpacking libcups2:amd64 (1.7.1-12) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.20-3_all.deb ...
Unpacking libthai-data (0.1.20-3) ...
@@ -523,8 +474,8 @@ Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../libgraphite2-3_1.2.4-2_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.2.4-2) ...
Selecting previously unselected package libharfbuzz0b:amd64.
-Preparing to unpack .../libharfbuzz0b_0.9.26-4_amd64.deb ...
-Unpacking libharfbuzz0b:amd64 (0.9.26-4) ...
+Preparing to unpack .../libharfbuzz0b_0.9.27-1_amd64.deb ...
+Unpacking libharfbuzz0b:amd64 (0.9.27-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../libpangoft2-1.0-0_1.36.3-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.36.3-1) ...
@@ -550,14 +501,14 @@ Selecting previously unselected package shared-mime-info.
Preparing to unpack .../shared-mime-info_1.2-1_amd64.deb ...
Unpacking shared-mime-info (1.2-1) ...
Selecting previously unselected package libgtk2.0-0:amd64.
-Preparing to unpack .../libgtk2.0-0_2.24.22-1_amd64.deb ...
-Unpacking libgtk2.0-0:amd64 (2.24.22-1) ...
+Preparing to unpack .../libgtk2.0-0_2.24.23-1_amd64.deb ...
+Unpacking libgtk2.0-0:amd64 (2.24.23-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../openssl_1.0.1f-1_amd64.deb ...
Unpacking openssl (1.0.1f-1) ...
Selecting previously unselected package ca-certificates.
-Preparing to unpack .../ca-certificates_20140223_all.deb ...
-Unpacking ca-certificates (20140223) ...
+Preparing to unpack .../ca-certificates_20140325_all.deb ...
+Unpacking ca-certificates (20140325) ...
Selecting previously unselected package libnspr4:amd64.
Preparing to unpack .../libnspr4_2%3a4.10.4-1_amd64.deb ...
Unpacking libnspr4:amd64 (2:4.10.4-1) ...
@@ -565,11 +516,11 @@ Selecting previously unselected package libnss3:amd64.
Preparing to unpack .../libnss3_2%3a3.16-1_amd64.deb ...
Unpacking libnss3:amd64 (2:3.16-1) ...
Selecting previously unselected package ca-certificates-java.
-Preparing to unpack .../ca-certificates-java_20130815_all.deb ...
-Unpacking ca-certificates-java (20130815) ...
+Preparing to unpack .../ca-certificates-java_20140324_all.deb ...
+Unpacking ca-certificates-java (20140324) ...
Selecting previously unselected package tzdata-java.
-Preparing to unpack .../tzdata-java_2014a-1_all.deb ...
-Unpacking tzdata-java (2014a-1) ...
+Preparing to unpack .../tzdata-java_2014b-1_all.deb ...
+Unpacking tzdata-java (2014b-1) ...
Selecting previously unselected package java-common.
Preparing to unpack .../java-common_0.51_all.deb ...
Unpacking java-common (0.51) ...
@@ -580,8 +531,8 @@ Selecting previously unselected package libpcsclite1:amd64.
Preparing to unpack .../libpcsclite1_1.8.11-1_amd64.deb ...
Unpacking libpcsclite1:amd64 (1.8.11-1) ...
Selecting previously unselected package openjdk-7-jre-headless:amd64.
-Preparing to unpack .../openjdk-7-jre-headless_7u51-2.4.5-2_amd64.deb ...
-Unpacking openjdk-7-jre-headless:amd64 (7u51-2.4.5-2) ...
+Preparing to unpack .../openjdk-7-jre-headless_7u51-2.4.6-1_amd64.deb ...
+Unpacking openjdk-7-jre-headless:amd64 (7u51-2.4.6-1) ...
Selecting previously unselected package default-jre-headless.
Preparing to unpack .../default-jre-headless_2%3a1.7-51_amd64.deb ...
Unpacking default-jre-headless (2:1.7-51) ...
@@ -589,8 +540,8 @@ Selecting previously unselected package libgif4:amd64.
Preparing to unpack .../libgif4_4.1.6-11_amd64.deb ...
Unpacking libgif4:amd64 (4.1.6-11) ...
Selecting previously unselected package x11-common.
-Preparing to unpack .../x11-common_1%3a7.7+6_all.deb ...
-Unpacking x11-common (1:7.7+6) ...
+Preparing to unpack .../x11-common_1%3a7.7+7_all.deb ...
+Unpacking x11-common (1:7.7+7) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../libice6_2%3a1.0.8-2_amd64.deb ...
Unpacking libice6:amd64 (2:1.0.8-2) ...
@@ -615,15 +566,21 @@ Unpacking libvorbisenc2:amd64 (1.3.2-1.3) ...
Selecting previously unselected package libsndfile1:amd64.
Preparing to unpack .../libsndfile1_1.0.25-9_amd64.deb ...
Unpacking libsndfile1:amd64 (1.0.25-9) ...
+Selecting previously unselected package libsystemd-id128-0:amd64.
+Preparing to unpack .../libsystemd-id128-0_204-8_amd64.deb ...
+Unpacking libsystemd-id128-0:amd64 (204-8) ...
+Selecting previously unselected package libsystemd-journal0:amd64.
+Preparing to unpack .../libsystemd-journal0_204-8_amd64.deb ...
+Unpacking libsystemd-journal0:amd64 (204-8) ...
Selecting previously unselected package libxtst6:amd64.
Preparing to unpack .../libxtst6_2%3a1.2.2-1_amd64.deb ...
Unpacking libxtst6:amd64 (2:1.2.2-1) ...
Selecting previously unselected package libpulse0:amd64.
-Preparing to unpack .../libpulse0_4.0-6+b1_amd64.deb ...
-Unpacking libpulse0:amd64 (4.0-6+b1) ...
+Preparing to unpack .../libpulse0_5.0-1_amd64.deb ...
+Unpacking libpulse0:amd64 (5.0-1) ...
Selecting previously unselected package openjdk-7-jre:amd64.
-Preparing to unpack .../openjdk-7-jre_7u51-2.4.5-2_amd64.deb ...
-Unpacking openjdk-7-jre:amd64 (7u51-2.4.5-2) ...
+Preparing to unpack .../openjdk-7-jre_7u51-2.4.6-1_amd64.deb ...
+Unpacking openjdk-7-jre:amd64 (7u51-2.4.6-1) ...
Selecting previously unselected package default-jre.
Preparing to unpack .../default-jre_2%3a1.7-51_amd64.deb ...
Unpacking default-jre (2:1.7-51) ...
@@ -640,26 +597,26 @@ Selecting previously unselected package libmpdec2:amd64.
Preparing to unpack .../libmpdec2_2.4.0-6_amd64.deb ...
Unpacking libmpdec2:amd64 (2.4.0-6) ...
Selecting previously unselected package libpython3.3-minimal:amd64.
-Preparing to unpack .../libpython3.3-minimal_3.3.5~rc2-1_amd64.deb ...
-Unpacking libpython3.3-minimal:amd64 (3.3.5~rc2-1) ...
+Preparing to unpack .../libpython3.3-minimal_3.3.5-1_amd64.deb ...
+Unpacking libpython3.3-minimal:amd64 (3.3.5-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.54_all.deb ...
Unpacking mime-support (3.54) ...
Selecting previously unselected package libpython3.3-stdlib:amd64.
-Preparing to unpack .../libpython3.3-stdlib_3.3.5~rc2-1_amd64.deb ...
-Unpacking libpython3.3-stdlib:amd64 (3.3.5~rc2-1) ...
+Preparing to unpack .../libpython3.3-stdlib_3.3.5-1_amd64.deb ...
+Unpacking libpython3.3-stdlib:amd64 (3.3.5-1) ...
Selecting previously unselected package libunistring0:amd64.
Preparing to unpack .../libunistring0_0.9.3-5_amd64.deb ...
Unpacking libunistring0:amd64 (0.9.3-5) ...
Selecting previously unselected package libpython2.7-minimal:amd64.
-Preparing to unpack .../libpython2.7-minimal_2.7.6-7_amd64.deb ...
-Unpacking libpython2.7-minimal:amd64 (2.7.6-7) ...
+Preparing to unpack .../libpython2.7-minimal_2.7.6-8_amd64.deb ...
+Unpacking libpython2.7-minimal:amd64 (2.7.6-8) ...
Selecting previously unselected package python2.7-minimal.
-Preparing to unpack .../python2.7-minimal_2.7.6-7_amd64.deb ...
-Unpacking python2.7-minimal (2.7.6-7) ...
+Preparing to unpack .../python2.7-minimal_2.7.6-8_amd64.deb ...
+Unpacking python2.7-minimal (2.7.6-8) ...
Selecting previously unselected package python3.3-minimal.
-Preparing to unpack .../python3.3-minimal_3.3.5~rc2-1_amd64.deb ...
-Unpacking python3.3-minimal (3.3.5~rc2-1) ...
+Preparing to unpack .../python3.3-minimal_3.3.5-1_amd64.deb ...
+Unpacking python3.3-minimal (3.3.5-1) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.17-1_amd64.deb ...
Unpacking file (1:5.17-1) ...
@@ -667,11 +624,11 @@ Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.18.3.2-1_amd64.deb ...
Unpacking gettext-base (0.18.3.2-1) ...
Selecting previously unselected package libpython2.7-stdlib:amd64.
-Preparing to unpack .../libpython2.7-stdlib_2.7.6-7_amd64.deb ...
-Unpacking libpython2.7-stdlib:amd64 (2.7.6-7) ...
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-8_amd64.deb ...
+Unpacking libpython2.7-stdlib:amd64 (2.7.6-8) ...
Selecting previously unselected package python2.7.
-Preparing to unpack .../python2.7_2.7.6-7_amd64.deb ...
-Unpacking python2.7 (2.7.6-7) ...
+Preparing to unpack .../python2.7_2.7.6-8_amd64.deb ...
+Unpacking python2.7 (2.7.6-8) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.5-5_amd64.deb ...
Unpacking python-minimal (2.7.5-5) ...
@@ -709,14 +666,14 @@ Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20140228_all.deb ...
Unpacking debhelper (9.20140228) ...
Selecting previously unselected package openjdk-7-jdk:amd64.
-Preparing to unpack .../openjdk-7-jdk_7u51-2.4.5-2_amd64.deb ...
-Unpacking openjdk-7-jdk:amd64 (7u51-2.4.5-2) ...
+Preparing to unpack .../openjdk-7-jdk_7u51-2.4.6-1_amd64.deb ...
+Unpacking openjdk-7-jdk:amd64 (7u51-2.4.6-1) ...
Selecting previously unselected package default-jdk.
Preparing to unpack .../default-jdk_2%3a1.7-51_amd64.deb ...
Unpacking default-jdk (2:1.7-51) ...
Selecting previously unselected package python3.3.
-Preparing to unpack .../python3.3_3.3.5~rc2-1_amd64.deb ...
-Unpacking python3.3 (3.3.5~rc2-1) ...
+Preparing to unpack .../python3.3_3.3.5-1_amd64.deb ...
+Unpacking python3.3 (3.3.5-1) ...
Selecting previously unselected package python3-minimal.
Preparing to unpack .../python3-minimal_3.3.4-1_amd64.deb ...
Unpacking python3-minimal (3.3.4-1) ...
@@ -733,11 +690,11 @@ Selecting previously unselected package devscripts.
Preparing to unpack .../devscripts_2.14.1_amd64.deb ...
Unpacking devscripts (2.14.1) ...
Selecting previously unselected package libarchive-zip-perl.
-Preparing to unpack .../libarchive-zip-perl_1.30-7_all.deb ...
-Unpacking libarchive-zip-perl (1.30-7) ...
+Preparing to unpack .../libarchive-zip-perl_1.37-2_all.deb ...
+Unpacking libarchive-zip-perl (1.37-2) ...
Selecting previously unselected package javahelper.
-Preparing to unpack .../javahelper_0.45_all.deb ...
-Unpacking javahelper (0.45) ...
+Preparing to unpack .../javahelper_0.46_all.deb ...
+Unpacking javahelper (0.46) ...
Selecting previously unselected package libapache-pom-java.
Preparing to unpack .../libapache-pom-java_10-2_all.deb ...
Unpacking libapache-pom-java (10-2) ...
@@ -790,7 +747,7 @@ Selecting previously unselected package sbuild-build-depends-picard-tools-dummy.
Preparing to unpack .../sbuild-build-depends-picard-tools-dummy.deb ...
Unpacking sbuild-build-depends-picard-tools-dummy (0.invalid.0) ...
Setting up libncursesw5:amd64 (5.9+20140118-1) ...
-Setting up libpipeline1:amd64 (1.2.6-2) ...
+Setting up libpipeline1:amd64 (1.3.0-1) ...
Setting up libssl1.0.0:amd64 (1.0.1f-1) ...
Setting up libudev1:amd64 (204-8) ...
Setting up groff-base (1.22.2-5) ...
@@ -802,7 +759,7 @@ Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:amd64 (0.18.3.2-1) ...
Setting up libgpg-error0:amd64 (1.12-0.2) ...
Setting up libgcrypt11:amd64 (1.5.3-4) ...
-Setting up libffi6:amd64 (3.0.13-12) ...
+Setting up libffi6:amd64 (3.1~rc1+r3.0.13-12) ...
Setting up libp11-kit0:amd64 (0.20.2-4) ...
Setting up libtasn1-6:amd64 (3.4-3) ...
Setting up libgnutls26:amd64 (2.12.23-13) ...
@@ -812,18 +769,18 @@ Setting up libk5crypto3:amd64 (1.12.1+dfsg-1) ...
Setting up libkrb5-3:amd64 (1.12.1+dfsg-1) ...
Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-1) ...
Setting up libmagic1:amd64 (1:5.17-1) ...
-Setting up libsqlite3-0:amd64 (3.8.3.1-1) ...
+Setting up libsqlite3-0:amd64 (3.8.4.1-1) ...
Setting up libwrap0:amd64 (7.6.q-25) ...
Setting up libxml2:amd64 (2.9.1+dfsg1-3) ...
Setting up libasound2-data (1.0.27.2-3) ...
Setting up libasound2:amd64 (1.0.27.2-3) ...
Setting up libasyncns0:amd64 (0.8-5) ...
-Setting up libglib2.0-0:amd64 (2.38.2-5) ...
+Setting up libglib2.0-0:amd64 (2.40.0-2) ...
No schema files found: doing nothing.
-Setting up libatk1.0-data (2.10.0-2) ...
-Setting up libatk1.0-0:amd64 (2.10.0-2) ...
+Setting up libatk1.0-data (2.12.0-1) ...
+Setting up libatk1.0-0:amd64 (2.12.0-1) ...
Setting up libdrm2:amd64 (2.4.52-1) ...
-Setting up libglapi-mesa:amd64 (10.1.0-3) ...
+Setting up libglapi-mesa:amd64 (10.1.0-5) ...
Setting up libllvm3.4:amd64 (1:3.4-2) ...
Setting up libwayland-client0:amd64 (1.4.0-1) ...
Setting up libwayland-server0:amd64 (1.4.0-1) ...
@@ -831,14 +788,14 @@ Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libxdmcp6:amd64 (1:1.1.1-1) ...
Setting up libxcb1:amd64 (1.10-2) ...
Setting up libxcb-dri2-0:amd64 (1.10-2) ...
-Setting up libgbm1:amd64 (10.1.0-3) ...
+Setting up libgbm1:amd64 (10.1.0-5) ...
Setting up libx11-data (2:1.6.2-1) ...
Setting up libx11-6:amd64 (2:1.6.2-1) ...
Setting up libx11-xcb1:amd64 (2:1.6.2-1) ...
Setting up libxcb-render0:amd64 (1.10-2) ...
Setting up libxcb-shape0:amd64 (1.10-2) ...
Setting up libxcb-xfixes0:amd64 (1.10-2) ...
-Setting up libegl1-mesa:amd64 (10.1.0-3) ...
+Setting up libegl1-mesa:amd64 (10.1.0-5) ...
Setting up libexpat1:amd64 (2.1.0-4) ...
Setting up libpng12-0:amd64 (1.2.50-1) ...
Setting up libfreetype6:amd64 (2.5.2-1) ...
@@ -855,7 +812,7 @@ Setting up libxdamage1:amd64 (1:1.1.4-1) ...
Setting up libxext6:amd64 (2:1.3.2-1) ...
Setting up libxshmfence1:amd64 (1.1-2) ...
Setting up libxxf86vm1:amd64 (1:1.1.3-1) ...
-Setting up libgl1-mesa-glx:amd64 (10.1.0-3) ...
+Setting up libgl1-mesa-glx:amd64 (10.1.0-5) ...
Setting up libpixman-1-0:amd64 (0.32.4-1) ...
Setting up libxcb-shm0:amd64 (1.10-2) ...
Setting up libxrender1:amd64 (1:0.9.8-1) ...
@@ -866,12 +823,12 @@ Setting up libjbig0:amd64 (2.0-2) ...
Setting up libtiff5:amd64 (4.0.3-8) ...
Setting up libgdk-pixbuf2.0-common (2.30.6-1) ...
Setting up libgdk-pixbuf2.0-0:amd64 (2.30.6-1) ...
-Setting up libgtk2.0-common (2.24.22-1) ...
+Setting up libgtk2.0-common (2.24.23-1) ...
Setting up libavahi-common-data:amd64 (0.6.31-4) ...
Setting up libavahi-common3:amd64 (0.6.31-4) ...
-Setting up libdbus-1-3:amd64 (1.8.0-2) ...
+Setting up libdbus-1-3:amd64 (1.8.0-3) ...
Setting up libavahi-client3:amd64 (0.6.31-4) ...
-Setting up libcups2:amd64 (1.7.1-10) ...
+Setting up libcups2:amd64 (1.7.1-12) ...
Setting up libthai-data (0.1.20-3) ...
Setting up libdatrie1:amd64 (0.2.8-1) ...
Setting up libthai0:amd64 (0.1.20-3) ...
@@ -879,7 +836,7 @@ Setting up fontconfig (2.11.0-5) ...
Regenerating fonts cache... done.
Setting up libpango-1.0-0:amd64 (1.36.3-1) ...
Setting up libgraphite2-3:amd64 (1.2.4-2) ...
-Setting up libharfbuzz0b:amd64 (0.9.26-4) ...
+Setting up libharfbuzz0b:amd64 (0.9.27-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.36.3-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.36.3-1) ...
Setting up libxcomposite1:amd64 (1:0.4.4-1) ...
@@ -888,17 +845,17 @@ Setting up libxi6:amd64 (2:1.7.2-1) ...
Setting up libxinerama1:amd64 (2:1.1.3-1) ...
Setting up libxrandr2:amd64 (2:1.4.2-1) ...
Setting up shared-mime-info (1.2-1) ...
-Setting up libgtk2.0-0:amd64 (2.24.22-1) ...
+Setting up libgtk2.0-0:amd64 (2.24.23-1) ...
Setting up openssl (1.0.1f-1) ...
-Setting up ca-certificates (20140223) ...
+Setting up ca-certificates (20140325) ...
Setting up libnspr4:amd64 (2:4.10.4-1) ...
Setting up libnss3:amd64 (2:3.16-1) ...
-Setting up tzdata-java (2014a-1) ...
+Setting up tzdata-java (2014b-1) ...
Setting up java-common (0.51) ...
Setting up liblcms2-2:amd64 (2.5-1) ...
Setting up libpcsclite1:amd64 (1.8.11-1) ...
Setting up libgif4:amd64 (4.1.6-11) ...
-Setting up x11-common (1:7.7+6) ...
+Setting up x11-common (1:7.7+7) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
@@ -910,22 +867,24 @@ Setting up libflac8:amd64 (1.3.0-2) ...
Setting up libvorbis0a:amd64 (1.3.2-1.3) ...
Setting up libvorbisenc2:amd64 (1.3.2-1.3) ...
Setting up libsndfile1:amd64 (1.0.25-9) ...
+Setting up libsystemd-id128-0:amd64 (204-8) ...
+Setting up libsystemd-journal0:amd64 (204-8) ...
Setting up libxtst6:amd64 (2:1.2.2-1) ...
-Setting up libpulse0:amd64 (4.0-6+b1) ...
+Setting up libpulse0:amd64 (5.0-1) ...
Setting up libcroco3:amd64 (0.6.8-2) ...
Setting up libmpdec2:amd64 (2.4.0-6) ...
-Setting up libpython3.3-minimal:amd64 (3.3.5~rc2-1) ...
+Setting up libpython3.3-minimal:amd64 (3.3.5-1) ...
Setting up mime-support (3.54) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up libpython3.3-stdlib:amd64 (3.3.5~rc2-1) ...
+Setting up libpython3.3-stdlib:amd64 (3.3.5-1) ...
Setting up libunistring0:amd64 (0.9.3-5) ...
-Setting up libpython2.7-minimal:amd64 (2.7.6-7) ...
-Setting up python2.7-minimal (2.7.6-7) ...
-Setting up python3.3-minimal (3.3.5~rc2-1) ...
+Setting up libpython2.7-minimal:amd64 (2.7.6-8) ...
+Setting up python2.7-minimal (2.7.6-8) ...
+Setting up python3.3-minimal (3.3.5-1) ...
Setting up file (1:5.17-1) ...
Setting up gettext-base (0.18.3.2-1) ...
-Setting up libpython2.7-stdlib:amd64 (2.7.6-7) ...
-Setting up python2.7 (2.7.6-7) ...
+Setting up libpython2.7-stdlib:amd64 (2.7.6-8) ...
+Setting up python2.7 (2.7.6-8) ...
Setting up python-minimal (2.7.5-5) ...
Setting up libpython-stdlib:amd64 (2.7.5-5) ...
Setting up python (2.7.5-5) ...
@@ -937,10 +896,10 @@ Setting up gettext (0.18.3.2-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20140228) ...
-Setting up python3.3 (3.3.5~rc2-1) ...
+Setting up python3.3 (3.3.5-1) ...
Setting up python3-minimal (3.3.4-1) ...
Setting up libpython3-stdlib:amd64 (3.3.4-1) ...
-Setting up libarchive-zip-perl (1.30-7) ...
+Setting up libarchive-zip-perl (1.37-2) ...
Setting up libapache-pom-java (10-2) ...
Setting up libasm3-java (3.3.2-2) ...
Setting up libatinject-jsr330-api-java (1.0+ds1-1) ...
@@ -960,8 +919,8 @@ Setting up libjbzip2-java (0.9.1-3) ...
Setting up dh-python (1.20140128-1) ...
Setting up python3 (3.3.4-1) ...
Setting up devscripts (2.14.1) ...
-Setting up javahelper (0.45) ...
-Setting up openjdk-7-jre-headless:amd64 (7u51-2.4.5-2) ...
+Setting up javahelper (0.46) ...
+Setting up openjdk-7-jre-headless:amd64 (7u51-2.4.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
@@ -973,11 +932,11 @@ update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (2:1.7-51) ...
-Setting up openjdk-7-jre:amd64 (7u51-2.4.5-2) ...
+Setting up openjdk-7-jre:amd64 (7u51-2.4.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-51) ...
Setting up ant (1.9.3-2) ...
-Setting up openjdk-7-jdk:amd64 (7u51-2.4.5-2) ...
+Setting up openjdk-7-jdk:amd64 (7u51-2.4.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
@@ -1008,13 +967,13 @@ update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsimport to pro
update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
Setting up default-jdk (2:1.7-51) ...
Setting up sbuild-build-depends-picard-tools-dummy (0.invalid.0) ...
-Setting up ca-certificates-java (20130815) ...
+Setting up ca-certificates-java (20140324) ...
done.
Setting up libatk-wrapper-java (0.30.4-4) ...
Setting up libatk-wrapper-java-jni:amd64 (0.30.4-4) ...
Processing triggers for libc-bin (2.18-4) ...
-Processing triggers for ca-certificates (20140223) ...
-Updating certificates in /etc/ssl/certs... 163 added, 0 removed; done.
+Processing triggers for ca-certificates (20140325) ...
+Updating certificates in /etc/ssl/certs... 168 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....
Adding debian:A-Trust-nQual-03.pem
Adding debian:ACCVRAIZ1.pem
@@ -1076,10 +1035,12 @@ Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:EC-ACC.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
+Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
+Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
@@ -1111,6 +1072,7 @@ Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_3.pem
+Adding debian:RSA_Root_Certificate_1.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
@@ -1157,6 +1119,8 @@ Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
+Adding debian:ValiCert_Class_1_VA.pem
+Adding debian:ValiCert_Class_2_VA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
@@ -1187,8 +1151,8 @@ done.
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.12-1-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.24-4 dpkg-dev_1.17.6 g++-4.8_4.8.2-16 gcc-4.8_4.8.2-16 libc6-dev_2.18-4 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 linux-libc-dev_3.13.6-1
-Package versions: ant_1.9.3-2 apt_0.9.16.1 base-files_7.2 base-passwd_3.5.32 bash_4.3-4 binutils_2.24-4 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20140223 ca-certificates-java_20130815 coreutils_8.21-1.1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-16 dash_0.5.7-4 dctrl-tools_2.23 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20140228 debian-archive-keyring_2012.4 debianutils_4.4 default-jdk_2:1.7-51 default-jre_2:1.7-51 default-jre-hea [...]
+Toolchain package versions: binutils_2.24-5 dpkg-dev_1.17.6 g++-4.8_4.8.2-19 gcc-4.8_4.8.2-19 libc6-dev_2.18-4 libstdc++-4.8-dev_4.8.2-19 libstdc++6_4.8.2-19 linux-libc-dev_3.13.7-1
+Package versions: ant_1.9.3-2 apt_1.0 base-files_7.2 base-passwd_3.5.32 bash_4.3-5 binutils_2.24-5 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.7 build-essential_11.6 bzip2_1.0.6-5 ca-certificates_20140325 ca-certificates-java_20140324 coreutils_8.21-1.1 cpp_4:4.8.2-3 cpp-4.8_4.8.2-19 dash_0.5.7-4 dctrl-tools_2.23 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20140228 debian-archive-keyring_2012.4 debianutils_4.4 default-jdk_2:1.7-51 default-jre_2:1.7-51 default-jre-headless [...]
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1198,10 +1162,10 @@ Package versions: ant_1.9.3-2 apt_0.9.16.1 base-files_7.2 base-passwd_3.5.32 bas
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (picard-tools_1.109-1.dsc)
-dpkg-source: info: extracting picard-tools in picard-tools-1.109
-dpkg-source: info: unpacking picard-tools_1.109.orig.tar.xz
-dpkg-source: info: unpacking picard-tools_1.109-1.debian.tar.xz
+dpkg-source: warning: extracting unsigned source package (picard-tools_1.110-1.dsc)
+dpkg-source: info: extracting picard-tools in picard-tools-1.110
+dpkg-source: info: unpacking picard-tools_1.110.orig.tar.xz
+dpkg-source: info: unpacking picard-tools_1.110-1.debian.tar.xz
dpkg-source: info: applying use_libjbzip2-java
dpkg-source: info: applying 01-build.xml
@@ -1221,7 +1185,7 @@ SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=unstable-amd64-sbuild-ff2a2cc5-e1d9-4f8b-bcaf-735f43871d77
+SCHROOT_SESSION_ID=unstable-amd64-sbuild-6feaf607-19a0-476a-a740-93a2713cd2ff
SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -1230,17 +1194,17 @@ USER=charles
USERNAME=charles
XDG_RUNTIME_DIR=/run/user/1000
XDG_SEAT=seat0
-XDG_SESSION_ID=6
+XDG_SESSION_ID=4
XDG_VTNR=7
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package picard-tools
-dpkg-buildpackage: source version 1.109-1
+dpkg-buildpackage: source version 1.110-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build picard-tools-1.109
+ dpkg-source --before-build picard-tools-1.110
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean --with javahelper,python2
@@ -1255,11 +1219,11 @@ BUILD SUCCESSFUL
Total time: 0 seconds
jh_clean
dh_clean
- dpkg-source -b picard-tools-1.109
+ dpkg-source -b picard-tools-1.110
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building picard-tools using existing ./picard-tools_1.109.orig.tar.xz
-dpkg-source: info: building picard-tools in picard-tools_1.109-1.debian.tar.xz
-dpkg-source: info: building picard-tools in picard-tools_1.109-1.dsc
+dpkg-source: info: building picard-tools using existing ./picard-tools_1.110.orig.tar.xz
+dpkg-source: info: building picard-tools in picard-tools_1.110-1.debian.tar.xz
+dpkg-source: info: building picard-tools in picard-tools_1.110-1.dsc
debian/rules build
dh build --with javahelper,python2
dh_testdir
@@ -1280,7 +1244,7 @@ init:
compile-sam-jdk:
[mkdir] Created dir: /«PKGBUILDDIR»/classes
[javac] /«PKGBUILDDIR»/build.xml:487: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 132 source files to /«PKGBUILDDIR»/classes
+ [javac] Compiling 137 source files to /«PKGBUILDDIR»/classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1288,11 +1252,11 @@ compile-sam-jdk:
sam-jar:
[mkdir] Created dir: /«PKGBUILDDIR»/dist
- [jar] Building jar: /«PKGBUILDDIR»/dist/sam-1.109.jar
+ [jar] Building jar: /«PKGBUILDDIR»/dist/sam-1.110.jar
compile-tribble:
[javac] /«PKGBUILDDIR»/build.xml:487: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 68 source files to /«PKGBUILDDIR»/classes
+ [javac] Compiling 72 source files to /«PKGBUILDDIR»/classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1308,7 +1272,7 @@ compile-variant:
compile-picard:
[javac] /«PKGBUILDDIR»/build.xml:487: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 248 source files to /«PKGBUILDDIR»/classes
+ [javac] Compiling 264 source files to /«PKGBUILDDIR»/classes
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1319,13 +1283,13 @@ compile-src:
compile-sam-jdk-tests:
[mkdir] Created dir: /«PKGBUILDDIR»/testclasses
[javac] /«PKGBUILDDIR»/build.xml:510: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 35 source files to /«PKGBUILDDIR»/testclasses
+ [javac] Compiling 36 source files to /«PKGBUILDDIR»/testclasses
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
compile-picard-tests:
[javac] /«PKGBUILDDIR»/build.xml:510: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 85 source files to /«PKGBUILDDIR»/testclasses
+ [javac] Compiling 86 source files to /«PKGBUILDDIR»/testclasses
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1334,7 +1298,7 @@ compile-picard-tests:
compile-tribble-tests:
[javac] /«PKGBUILDDIR»/build.xml:510: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 21 source files to /«PKGBUILDDIR»/testclasses
+ [javac] Compiling 22 source files to /«PKGBUILDDIR»/testclasses
[javac] warning: Implicitly compiled files were not subject to annotation processing.
[javac] Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1343,7 +1307,7 @@ compile-tribble-tests:
compile-variant-tests:
[javac] /«PKGBUILDDIR»/build.xml:510: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
- [javac] Compiling 15 source files to /«PKGBUILDDIR»/testclasses
+ [javac] Compiling 16 source files to /«PKGBUILDDIR»/testclasses
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
@@ -1354,12 +1318,12 @@ compile-tests:
compile:
picard-jar:
- [jar] Building jar: /«PKGBUILDDIR»/dist/picard-1.109.jar
+ [jar] Building jar: /«PKGBUILDDIR»/dist/picard-1.110.jar
jar:
BUILD SUCCESSFUL
-Total time: 25 seconds
+Total time: 31 seconds
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_build
dh_auto_test
@@ -1377,8 +1341,8 @@ dh binary --with javahelper,python2
dh_perl
debian/rules override_dh_link
make[1]: Entering directory `/«PKGBUILDDIR»'
-dh_link -p libsam-java usr/share/java/sam-1.109.jar usr/share/java/sam.jar
-dh_link -p picard-tools usr/share/java/picard-1.109.jar usr/share/java/picard.jar
+dh_link -p libsam-java usr/share/java/sam-1.110.jar usr/share/java/sam.jar
+dh_link -p picard-tools usr/share/java/picard-1.110.jar usr/share/java/picard.jar
make[1]: Leaving directory `/«PKGBUILDDIR»'
jh_installlibs
jh_classpath
@@ -1394,14 +1358,14 @@ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is no
dpkg-gencontrol: warning: package picard-tools: unused substitution variable ${java:Depends}
dh_md5sums
dh_builddeb
-dpkg-deb: building package `libsam-java' in `../libsam-java_1.109-1_all.deb'.
-dpkg-deb: building package `picard-tools' in `../picard-tools_1.109-1_all.deb'.
- dpkg-genchanges >../picard-tools_1.109-1_amd64.changes
+dpkg-deb: building package `libsam-java' in `../libsam-java_1.110-1_all.deb'.
+dpkg-deb: building package `picard-tools' in `../picard-tools_1.110-1_all.deb'.
+ dpkg-genchanges >../picard-tools_1.110-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build picard-tools-1.109
+ dpkg-source --after-build picard-tools-1.110
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20140322-1151
+Build finished at 20140406-1111
Finished
────────
@@ -1418,7 +1382,7 @@ lintian
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
-dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-N9QP06/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-wQ_Rjr/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
OK
Reading package lists...
@@ -1453,12 +1417,14 @@ The following NEW packages will be installed:
libnet-ssleay-perl libparse-debianchangelog-perl libsocket6-perl
libsub-name-perl libtext-levenshtein-perl liburi-perl lintian netbase
patchutils sbuild-build-depends-lintian-dummy t1utils
-debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/2421 kB of archives.
-After this operation, 7997 kB of additional disk space will be used.
+Need to get 750 kB/2447 kB of archives.
+After this operation, 8145 kB of additional disk space will be used.
+Get:1 http://ftp.jp.debian.org/debian/ unstable/main lintian all 2.5.22.1 [750 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 750 kB in 0s (1115 kB/s)
Selecting previously unselected package netbase.
-(Reading database ... 18405 files and directories currently installed.)
+(Reading database ... 18425 files and directories currently installed.)
Preparing to unpack .../archives/netbase_5.2_all.deb ...
Unpacking netbase (5.2) ...
Selecting previously unselected package diffstat.
@@ -1486,8 +1452,8 @@ Selecting previously unselected package libnet-ssleay-perl.
Preparing to unpack .../libnet-ssleay-perl_1.58-1_amd64.deb ...
Unpacking libnet-ssleay-perl (1.58-1) ...
Selecting previously unselected package libio-socket-ssl-perl.
-Preparing to unpack .../libio-socket-ssl-perl_1.967-1_all.deb ...
-Unpacking libio-socket-ssl-perl (1.967-1) ...
+Preparing to unpack .../libio-socket-ssl-perl_1.973-2_all.deb ...
+Unpacking libio-socket-ssl-perl (1.973-2) ...
Selecting previously unselected package libnet-smtp-ssl-perl.
Preparing to unpack .../libnet-smtp-ssl-perl_1.01-3_all.deb ...
Unpacking libnet-smtp-ssl-perl (1.01-3) ...
@@ -1501,8 +1467,8 @@ Selecting previously unselected package libsocket6-perl.
Preparing to unpack .../libsocket6-perl_0.25-1_amd64.deb ...
Unpacking libsocket6-perl (0.25-1) ...
Selecting previously unselected package libio-socket-inet6-perl.
-Preparing to unpack .../libio-socket-inet6-perl_2.71-1_all.deb ...
-Unpacking libio-socket-inet6-perl (2.71-1) ...
+Preparing to unpack .../libio-socket-inet6-perl_2.72-1_all.deb ...
+Unpacking libio-socket-inet6-perl (2.72-1) ...
Selecting previously unselected package libnet-dns-perl.
Preparing to unpack .../libnet-dns-perl_0.68-1.2_amd64.deb ...
Unpacking libnet-dns-perl (0.68-1.2) ...
@@ -1543,8 +1509,8 @@ Selecting previously unselected package t1utils.
Preparing to unpack .../t1utils_1.37-2_amd64.deb ...
Unpacking t1utils (1.37-2) ...
Selecting previously unselected package lintian.
-Preparing to unpack .../lintian_2.5.21_all.deb ...
-Unpacking lintian (2.5.21) ...
+Preparing to unpack .../lintian_2.5.22.1_all.deb ...
+Unpacking lintian (2.5.22.1) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
Preparing to unpack .../sbuild-build-depends-lintian-dummy.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
@@ -1559,12 +1525,12 @@ Setting up libclass-accessor-perl (0.34-1) ...
Setting up libclone-perl (0.36-1) ...
Setting up libdigest-hmac-perl (1.03+dfsg-1) ...
Setting up libnet-ssleay-perl (1.58-1) ...
-Setting up libio-socket-ssl-perl (1.967-1) ...
+Setting up libio-socket-ssl-perl (1.973-2) ...
Setting up libnet-smtp-ssl-perl (1.01-3) ...
Setting up libmailtools-perl (2.12-1) ...
Setting up libnet-ip-perl (1.26-1) ...
Setting up libsocket6-perl (0.25-1) ...
-Setting up libio-socket-inet6-perl (2.71-1) ...
+Setting up libio-socket-inet6-perl (2.72-1) ...
Setting up libnet-dns-perl (0.68-1.2) ...
Setting up libnet-domain-tld-perl (1.70-1) ...
Setting up libemail-valid-perl (1.192-1) ...
@@ -1578,13 +1544,13 @@ Setting up libtext-levenshtein-perl (0.06~01-2) ...
Setting up liburi-perl (1.60-1) ...
Setting up patchutils (0.3.2-3) ...
Setting up t1utils (1.37-2) ...
-Setting up lintian (2.5.21) ...
+Setting up lintian (2.5.22.1) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
P: picard-tools source: source-contains-prebuilt-windows-binary testdata/net/sf/picard/illumina/readerTests/s_1_9.locs
P: picard-tools source: debian-watch-may-check-gpg-signature
-P: picard-tools: no-upstream-changelog
P: libsam-java: no-upstream-changelog
I: libsam-java: extended-description-is-probably-too-short
+P: picard-tools: no-upstream-changelog
I: Lintian run was successful.
@@ -1593,15 +1559,15 @@ I: Lintian run was successful.
└──────────────────────────────────────────────────────────────────────────────┘
-picard-tools_1.109-1_amd64.changes:
+picard-tools_1.110-1_amd64.changes:
───────────────────────────────────
Format: 1.8
-Date: Sat, 22 Mar 2014 11:35:22 +0900
+Date: Sun, 06 Apr 2014 10:56:12 +0900
Source: picard-tools
Binary: libsam-java picard-tools
Architecture: source all
-Version: 1.109-1
+Version: 1.110-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -1610,46 +1576,48 @@ Description:
libsam-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
- picard-tools (1.109-1) unstable; urgency=medium
+ picard-tools (1.110-1) unstable; urgency=medium
.
- * Imported Upstream versions 1.106, 1.107, 1.108 and 1.109.
+ * Imported Upstream version 1.110.
+ * Normalised debian/control with config-model-edit.
+ * Refreshed patch ‘use_libjbzip2-java’.
Checksums-Sha1:
- 6a919cd0c41e83e53a9abe76aedad24ccbb0ea42 1333 picard-tools_1.109-1.dsc
- 61be1bc86f3a05701dd6d9d9cb28975a36599109 13570976 picard-tools_1.109.orig.tar.xz
- 3626c637bb10e20cecece6fbdb9ab0916560526d 9408 picard-tools_1.109-1.debian.tar.xz
- eb5aec043019984791968b484d0ccda148569166 188880 libsam-java_1.109-1_all.deb
- 7f186e3258a3c4c55c8e8e465aee4c7bd51a8f2e 630116 picard-tools_1.109-1_all.deb
+ 7aef955f4ba45057a99ed8a784611f9ed0594f82 1323 picard-tools_1.110-1.dsc
+ 45f2d830475f643f37301df8916aa6d2591584de 14109708 picard-tools_1.110.orig.tar.xz
+ 36a02761fe7bc86b484fa56f43df6ab54204e3e3 9476 picard-tools_1.110-1.debian.tar.xz
+ e1c70c77ea1d898f7ded942b6680f91625f1bab9 194930 libsam-java_1.110-1_all.deb
+ 9c8a8a29d01911d9487af2739d135b6643a195e8 645946 picard-tools_1.110-1_all.deb
Checksums-Sha256:
- c14dbdde802f51dfdae1a957218363c606daa6905f929af65d2824e967f67252 1333 picard-tools_1.109-1.dsc
- c38dc75987d37c9344ccc91a39718d965a6bd07b31d1014bbee3941d4d2b462c 13570976 picard-tools_1.109.orig.tar.xz
- 5c5c76cf54f89e839c892e6809a1f46c1cd91673f2bb3b0ea540dc3335256c5b 9408 picard-tools_1.109-1.debian.tar.xz
- 1bacb1e2753db90be81e71979c713e0276387070cc20078220e0981dce8e4d04 188880 libsam-java_1.109-1_all.deb
- 0b7c64c24a4f4a56ea2a58e6ce77291af2a55bc242c22d76caede02ba03e60eb 630116 picard-tools_1.109-1_all.deb
+ 531dc877de9b2342b43c3095423f2889fdc33385194ead5516f31368ab37b6b0 1323 picard-tools_1.110-1.dsc
+ 5274fa042a9df7e45d6591140206ce4c6bc9c5f1f5a4abc69476dadd0d420300 14109708 picard-tools_1.110.orig.tar.xz
+ b4dbef1a65299d2bffb8903f2542583f0484012f01832f79df4538e2e3cf61e9 9476 picard-tools_1.110-1.debian.tar.xz
+ b8afa0bda489edfcbd22114b970c7f307a2dec6d48338bcb0a258b32eddec51c 194930 libsam-java_1.110-1_all.deb
+ 213eb16885ef1bfbc4c7e41d6ecaad9ed6d66e1549200961c0c843f571b958c0 645946 picard-tools_1.110-1_all.deb
Files:
- c9c58f6b7d11bb07d12d897e5627bb20 1333 science optional picard-tools_1.109-1.dsc
- 032b4a14db51ef27891a72a40853520c 13570976 science optional picard-tools_1.109.orig.tar.xz
- d3c6936156c995f8e9d9e32daa03de46 9408 science optional picard-tools_1.109-1.debian.tar.xz
- a9309eaf489f2374bd7276abafbb0732 188880 java optional libsam-java_1.109-1_all.deb
- e732191bcd63654f17eeae76997bdc4e 630116 science optional picard-tools_1.109-1_all.deb
+ 3570ec85c568c949507cfa6aae8b644e 1323 science optional picard-tools_1.110-1.dsc
+ bc3a0bf301948efa9be5e113486fc23d 14109708 science optional picard-tools_1.110.orig.tar.xz
+ 4c34b437509bb0b0d3469097c287992e 9476 science optional picard-tools_1.110-1.debian.tar.xz
+ 5fd5f28266e41fece2edd1fd7a2c8f43 194930 java optional libsam-java_1.110-1_all.deb
+ 7b94a9d536f11d7ae7b5a24ee78fb6dc 645946 science optional picard-tools_1.110-1_all.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-libsam-java_1.109-1_all.deb
+libsam-java_1.110-1_all.deb
───────────────────────────
new debian package, version 2.0.
- size 188880 bytes: control archive=636 bytes.
+ size 194930 bytes: control archive=637 bytes.
445 bytes, 13 lines control
213 bytes, 3 lines md5sums
Package: libsam-java
Source: picard-tools
- Version: 1.109-1
+ Version: 1.110-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 716
+ Installed-Size: 741
Suggests: picard-tools
Section: java
Priority: optional
@@ -1658,33 +1626,33 @@ libsam-java_1.109-1_all.deb
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments.
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/doc/libsam-java/
--rw-r--r-- root/root 12344 2014-03-22 11:34 ./usr/share/doc/libsam-java/copyright
--rw-r--r-- root/root 1370 2014-03-22 11:35 ./usr/share/doc/libsam-java/changelog.Debian.gz
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/java/
--rw-r--r-- root/root 689908 2014-03-22 11:51 ./usr/share/java/sam-1.109.jar
-lrwxrwxrwx root/root 0 2014-03-22 11:51 ./usr/share/java/sam.jar -> sam-1.109.jar
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/doc/libsam-java/
+-rw-r--r-- root/root 12344 2014-04-06 10:45 ./usr/share/doc/libsam-java/copyright
+-rw-r--r-- root/root 1448 2014-04-06 10:56 ./usr/share/doc/libsam-java/changelog.Debian.gz
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/java/
+-rw-r--r-- root/root 715459 2014-04-06 11:11 ./usr/share/java/sam-1.110.jar
+lrwxrwxrwx root/root 0 2014-04-06 11:11 ./usr/share/java/sam.jar -> sam-1.110.jar
-picard-tools_1.109-1_all.deb
+picard-tools_1.110-1_all.deb
────────────────────────────
new debian package, version 2.0.
- size 630116 bytes: control archive=1503 bytes.
+ size 645946 bytes: control archive=1494 bytes.
1338 bytes, 28 lines control
580 bytes, 8 lines md5sums
185 bytes, 9 lines * postinst #!/bin/sh
261 bytes, 14 lines * prerm #!/bin/sh
Package: picard-tools
- Version: 1.109-1
+ Version: 1.110-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 2667
- Depends: default-jre | java6-runtime, libsam-java (>= 1.109-1), python:any (>= 2.6.6-7~), libjbzip2-java, libcofoja-java, libcommons-jexl2-java
+ Installed-Size: 2741
+ Depends: default-jre | java6-runtime, libsam-java (>= 1.110-1), python:any (>= 2.6.6-7~), libjbzip2-java, libcofoja-java, libcommons-jexl2-java
Suggests: python, r-base-core
Section: science
Priority: optional
@@ -1708,27 +1676,27 @@ picard-tools_1.109-1_all.deb
FastqToSam ValidateSamFile
FixMateInformation ViewSam
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/picard-tools/
--rwxr-xr-x root/root 2101 2014-03-22 11:51 ./usr/share/picard-tools/explain_sam_flags.py
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/man/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/man/man1/
--rw-r--r-- root/root 722 2014-03-22 11:51 ./usr/share/man/man1/picard-tools.1.gz
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/doc/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/doc/picard-tools/
--rw-r--r-- root/root 12344 2014-03-22 11:34 ./usr/share/doc/picard-tools/copyright
--rw-r--r-- root/root 1370 2014-03-22 11:35 ./usr/share/doc/picard-tools/changelog.Debian.gz
--rw-r--r-- root/root 343 2014-03-22 11:05 ./usr/share/doc/picard-tools/README.Debian
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/python/
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/python/runtime.d/
--rwxr-xr-x root/root 150 2014-03-22 11:51 ./usr/share/python/runtime.d/picard-tools.rtupdate
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/share/java/
--rw-r--r-- root/root 2655546 2014-03-22 11:51 ./usr/share/java/picard-1.109.jar
-drwxr-xr-x root/root 0 2014-03-22 11:51 ./usr/bin/
--rwxr-xr-x root/root 3983 2014-03-22 11:05 ./usr/bin/picard-tools
-lrwxrwxrwx root/root 0 2014-03-22 11:51 ./usr/share/java/picard.jar -> picard-1.109.jar
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/picard-tools/
+-rwxr-xr-x root/root 2101 2014-04-06 11:11 ./usr/share/picard-tools/explain_sam_flags.py
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/man/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/man/man1/
+-rw-r--r-- root/root 722 2014-04-06 11:11 ./usr/share/man/man1/picard-tools.1.gz
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/doc/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/doc/picard-tools/
+-rw-r--r-- root/root 12344 2014-04-06 10:45 ./usr/share/doc/picard-tools/copyright
+-rw-r--r-- root/root 1448 2014-04-06 10:56 ./usr/share/doc/picard-tools/changelog.Debian.gz
+-rw-r--r-- root/root 343 2014-04-06 10:29 ./usr/share/doc/picard-tools/README.Debian
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/python/
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/python/runtime.d/
+-rwxr-xr-x root/root 150 2014-04-06 11:11 ./usr/share/python/runtime.d/picard-tools.rtupdate
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/share/java/
+-rw-r--r-- root/root 2731128 2014-04-06 11:11 ./usr/share/java/picard-1.110.jar
+drwxr-xr-x root/root 0 2014-04-06 11:11 ./usr/bin/
+-rwxr-xr-x root/root 3983 2014-04-06 10:29 ./usr/bin/picard-tools
+lrwxrwxrwx root/root 0 2014-04-06 11:11 ./usr/share/java/picard.jar -> picard-1.110.jar
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1779,38 +1747,38 @@ The following packages will be REMOVED:
libpython-stdlib* libpython2.7-minimal* libpython2.7-stdlib*
libpython3-stdlib* libpython3.3-minimal* libpython3.3-stdlib* libsm6*
libsnappy1* libsnappy1.0.3-java* libsndfile1* libsocket6-perl* libsqlite3-0*
- libssl1.0.0* libsub-name-perl* libtasn1-6* libtext-levenshtein-perl*
- libthai-data* libthai0* libtiff5* libudev1* libunistring0* liburi-perl*
- libvorbis0a* libvorbisenc2* libwayland-client0* libwayland-server0*
- libwrap0* libx11-6* libx11-data* libx11-xcb1* libxau6* libxcb-dri2-0*
- libxcb-dri3-0* libxcb-glx0* libxcb-present0* libxcb-render0* libxcb-shape0*
- libxcb-shm0* libxcb-sync1* libxcb-xfixes0* libxcb1* libxcomposite1*
- libxcursor1* libxdamage1* libxdmcp6* libxerces2-java* libxext6* libxfixes3*
- libxi6* libxinerama1* libxml-commons-external-java*
- libxml-commons-resolver1.1-java* libxml2* libxrandr2* libxrender1*
- libxshmfence1* libxtst6* libxxf86vm1* lintian* man-db* mime-support*
- netbase* openjdk-7-jdk* openjdk-7-jre* openjdk-7-jre-headless* openssl*
- patchutils* po-debconf* python* python-minimal* python2.7*
- python2.7-minimal* python3* python3-minimal* python3.3* python3.3-minimal*
- sbuild-build-depends-core-dummy* sbuild-build-depends-lintian-dummy*
- sbuild-build-depends-picard-tools-dummy* shared-mime-info* t1utils* testng*
- tzdata-java* ucf* x11-common*
-0 upgraded, 0 newly installed, 205 to remove and 0 not upgraded.
+ libssl1.0.0* libsub-name-perl* libsystemd-id128-0* libsystemd-journal0*
+ libtasn1-6* libtext-levenshtein-perl* libthai-data* libthai0* libtiff5*
+ libudev1* libunistring0* liburi-perl* libvorbis0a* libvorbisenc2*
+ libwayland-client0* libwayland-server0* libwrap0* libx11-6* libx11-data*
+ libx11-xcb1* libxau6* libxcb-dri2-0* libxcb-dri3-0* libxcb-glx0*
+ libxcb-present0* libxcb-render0* libxcb-shape0* libxcb-shm0* libxcb-sync1*
+ libxcb-xfixes0* libxcb1* libxcomposite1* libxcursor1* libxdamage1*
+ libxdmcp6* libxerces2-java* libxext6* libxfixes3* libxi6* libxinerama1*
+ libxml-commons-external-java* libxml-commons-resolver1.1-java* libxml2*
+ libxrandr2* libxrender1* libxshmfence1* libxtst6* libxxf86vm1* lintian*
+ man-db* mime-support* netbase* openjdk-7-jdk* openjdk-7-jre*
+ openjdk-7-jre-headless* openssl* patchutils* po-debconf* python*
+ python-minimal* python2.7* python2.7-minimal* python3* python3-minimal*
+ python3.3* python3.3-minimal* sbuild-build-depends-core-dummy*
+ sbuild-build-depends-lintian-dummy* sbuild-build-depends-picard-tools-dummy*
+ shared-mime-info* t1utils* testng* tzdata-java* ucf* x11-common*
+0 upgraded, 0 newly installed, 207 to remove and 0 not upgraded.
After this operation, 270 MB disk space will be freed.
-(Reading database ... 19538 files and directories currently installed.)
+(Reading database ... 19574 files and directories currently installed.)
Removing sbuild-build-depends-picard-tools-dummy (0.invalid.0) ...
Removing ant (1.9.3-2) ...
Removing sbuild-build-depends-lintian-dummy (0.invalid.0) ...
-Removing lintian (2.5.21) ...
-Purging configuration files for lintian (2.5.21) ...
-Removing javahelper (0.45) ...
+Removing lintian (2.5.22.1) ...
+Purging configuration files for lintian (2.5.22.1) ...
+Removing javahelper (0.46) ...
Removing debhelper (9.20140228) ...
Removing man-db (2.6.6-1) ...
Purging configuration files for man-db (2.6.6-1) ...
Removing bsdmainutils (9.0.5) ...
Purging configuration files for bsdmainutils (9.0.5) ...
Removing default-jdk (2:1.7-51) ...
-Removing openjdk-7-jdk:amd64 (7u51-2.4.5-2) ...
+Removing openjdk-7-jdk:amd64 (7u51-2.4.6-1) ...
Removing default-jre (2:1.7-51) ...
Removing default-jre-headless (2:1.7-51) ...
Removing dctrl-tools (2.23) ...
@@ -1834,7 +1802,7 @@ Removing libcommons-logging-java (1.1.3-1) ...
Removing libcommons-parent-java (22-2) ...
Removing libapache-pom-java (10-2) ...
Removing libapt-pkg-perl (0.1.29+b1) ...
-Removing libarchive-zip-perl (1.30-7) ...
+Removing libarchive-zip-perl (1.37-2) ...
Removing libcofoja-java (1.1-r150-1) ...
Removing libcglib-java (2.2.2+dfsg2-1) ...
Removing libasm3-java (3.3.2-2) ...
@@ -1851,15 +1819,15 @@ Removing libnet-dns-perl (0.68-1.2) ...
Removing libdigest-hmac-perl (1.03+dfsg-1) ...
Removing python (2.7.5-5) ...
Purging configuration files for python (2.7.5-5) ...
-Removing python2.7 (2.7.6-7) ...
-Purging configuration files for python2.7 (2.7.6-7) ...
+Removing python2.7 (2.7.6-8) ...
+Purging configuration files for python2.7 (2.7.6-8) ...
Removing libfile-basedir-perl (0.03-1) ...
Removing libipc-run-perl (0.92-1) ...
Removing libio-pty-perl (1:1.08-1+b3) ...
-Removing libio-socket-inet6-perl (2.71-1) ...
+Removing libio-socket-inet6-perl (2.72-1) ...
Removing libmailtools-perl (2.12-1) ...
Removing libnet-smtp-ssl-perl (1.01-3) ...
-Removing libio-socket-ssl-perl (1.967-1) ...
+Removing libio-socket-ssl-perl (1.973-2) ...
Removing libio-string-perl (1.08-3) ...
Removing libjbzip2-java (0.9.1-3) ...
Removing libjcommander-java (1.32-1) ...
@@ -1869,12 +1837,12 @@ Purging configuration files for libmagic1:amd64 (1:5.17-1) ...
Removing libnet-domain-tld-perl (1.70-1) ...
Removing libnet-ip-perl (1.26-1) ...
Removing libnet-ssleay-perl (1.58-1) ...
-Removing libpipeline1:amd64 (1.2.6-2) ...
-Purging configuration files for libpipeline1:amd64 (1.2.6-2) ...
+Removing libpipeline1:amd64 (1.3.0-1) ...
+Purging configuration files for libpipeline1:amd64 (1.3.0-1) ...
Removing libpython-stdlib:amd64 (2.7.5-5) ...
Removing python-minimal (2.7.5-5) ...
-Removing python2.7-minimal (2.7.6-7) ...
-Purging configuration files for python2.7-minimal (2.7.6-7) ...
+Removing python2.7-minimal (2.7.6-8) ...
+Purging configuration files for python2.7-minimal (2.7.6-8) ...
Removing libsnappy1.0.3-java (1.0.3-rc3~dfsg-4) ...
Removing libsnappy1 (1.1.0-1) ...
Purging configuration files for libsnappy1 (1.1.0-1) ...
@@ -1893,38 +1861,38 @@ Purging configuration files for netbase (5.2) ...
Removing patchutils (0.3.2-3) ...
Removing sbuild-build-depends-core-dummy (0.invalid.0) ...
Removing t1utils (1.37-2) ...
-Removing libpython2.7-stdlib:amd64 (2.7.6-7) ...
+Removing libpython2.7-stdlib:amd64 (2.7.6-8) ...
dpkg-query: no packages found matching pkgname
-Removing libpython2.7-minimal:amd64 (2.7.6-7) ...
+Removing libpython2.7-minimal:amd64 (2.7.6-8) ...
dpkg-query: no packages found matching pkgname
dpkg-query: no packages found matching pkgname
-Purging configuration files for libpython2.7-minimal:amd64 (2.7.6-7) ...
+Purging configuration files for libpython2.7-minimal:amd64 (2.7.6-8) ...
dpkg-query: no packages found matching pkgname
Removing libatk-wrapper-java-jni:amd64 (0.30.4-4) ...
Purging configuration files for libatk-wrapper-java-jni:amd64 (0.30.4-4) ...
-Removing ca-certificates-java (20130815) ...
-Purging configuration files for ca-certificates-java (20130815) ...
-Removing ca-certificates (20140223) ...
+Removing ca-certificates-java (20140324) ...
+Purging configuration files for ca-certificates-java (20140324) ...
+Removing ca-certificates (20140325) ...
Removing dangling symlinks from /etc/ssl/certs... done.
-Purging configuration files for ca-certificates (20140223) ...
+Purging configuration files for ca-certificates (20140325) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing python3 (3.3.4-1) ...
Purging configuration files for python3 (3.3.4-1) ...
-Removing python3.3 (3.3.5~rc2-1) ...
-Purging configuration files for python3.3 (3.3.5~rc2-1) ...
+Removing python3.3 (3.3.5-1) ...
+Purging configuration files for python3.3 (3.3.5-1) ...
Removing python3-minimal (3.3.4-1) ...
-Removing python3.3-minimal (3.3.5~rc2-1) ...
-Purging configuration files for python3.3-minimal (3.3.5~rc2-1) ...
+Removing python3.3-minimal (3.3.5-1) ...
+Purging configuration files for python3.3-minimal (3.3.5-1) ...
Removing libpython3-stdlib:amd64 (3.3.4-1) ...
-Removing libpython3.3-stdlib:amd64 (3.3.5~rc2-1) ...
+Removing libpython3.3-stdlib:amd64 (3.3.5-1) ...
dpkg-query: no packages found matching pkgname
Removing libmpdec2:amd64 (2.4.0-6) ...
Purging configuration files for libmpdec2:amd64 (2.4.0-6) ...
Removing libncursesw5:amd64 (5.9+20140118-1) ...
Purging configuration files for libncursesw5:amd64 (5.9+20140118-1) ...
-Removing libpython3.3-minimal:amd64 (3.3.5~rc2-1) ...
+Removing libpython3.3-minimal:amd64 (3.3.5-1) ...
dpkg-query: no packages found matching pkgname
-Purging configuration files for libpython3.3-minimal:amd64 (3.3.5~rc2-1) ...
+Purging configuration files for libpython3.3-minimal:amd64 (3.3.5-1) ...
dpkg-query: no packages found matching pkgname
Removing openssl (1.0.1f-1) ...
Purging configuration files for openssl (1.0.1f-1) ...
@@ -1933,13 +1901,13 @@ Purging configuration files for libssl1.0.0:amd64 (1.0.1f-1) ...
Removing mime-support (3.54) ...
Purging configuration files for mime-support (3.54) ...
Removing libatk-wrapper-java (0.30.4-4) ...
-Removing openjdk-7-jre:amd64 (7u51-2.4.5-2) ...
-Removing openjdk-7-jre-headless:amd64 (7u51-2.4.5-2) ...
-Purging configuration files for openjdk-7-jre-headless:amd64 (7u51-2.4.5-2) ...
+Removing openjdk-7-jre:amd64 (7u51-2.4.6-1) ...
+Removing openjdk-7-jre-headless:amd64 (7u51-2.4.6-1) ...
+Purging configuration files for openjdk-7-jre-headless:amd64 (7u51-2.4.6-1) ...
Removing dh-python (1.20140128-1) ...
dpkg: warning: while removing dh-python, directory '/usr/share/dh-python/dhpython/build' not empty so not removed
-Removing libgtk2.0-0:amd64 (2.24.22-1) ...
-Purging configuration files for libgtk2.0-0:amd64 (2.24.22-1) ...
+Removing libgtk2.0-0:amd64 (2.24.23-1) ...
+Purging configuration files for libgtk2.0-0:amd64 (2.24.23-1) ...
Removing libpangocairo-1.0-0:amd64 (1.36.3-1) ...
Purging configuration files for libpangocairo-1.0-0:amd64 (1.36.3-1) ...
Removing libpangoft2-1.0-0:amd64 (1.36.3-1) ...
@@ -1961,15 +1929,15 @@ Purging configuration files for java-common (0.51) ...
Removing libasound2:amd64 (1.0.27.2-3) ...
Purging configuration files for libasound2:amd64 (1.0.27.2-3) ...
Removing libasound2-data (1.0.27.2-3) ...
-Removing libpulse0:amd64 (4.0-6+b1) ...
-Purging configuration files for libpulse0:amd64 (4.0-6+b1) ...
+Removing libpulse0:amd64 (5.0-1) ...
+Purging configuration files for libpulse0:amd64 (5.0-1) ...
Removing libasyncns0:amd64 (0.8-5) ...
Purging configuration files for libasyncns0:amd64 (0.8-5) ...
-Removing libatk1.0-0:amd64 (2.10.0-2) ...
-Purging configuration files for libatk1.0-0:amd64 (2.10.0-2) ...
-Removing libatk1.0-data (2.10.0-2) ...
-Removing libcups2:amd64 (1.7.1-10) ...
-Purging configuration files for libcups2:amd64 (1.7.1-10) ...
+Removing libatk1.0-0:amd64 (2.12.0-1) ...
+Purging configuration files for libatk1.0-0:amd64 (2.12.0-1) ...
+Removing libatk1.0-data (2.12.0-1) ...
+Removing libcups2:amd64 (1.7.1-12) ...
+Purging configuration files for libcups2:amd64 (1.7.1-12) ...
Removing libavahi-client3:amd64 (0.6.31-4) ...
Purging configuration files for libavahi-client3:amd64 (0.6.31-4) ...
Removing libavahi-common3:amd64 (0.6.31-4) ...
@@ -1979,14 +1947,14 @@ Removing libthai0:amd64 (0.1.20-3) ...
Purging configuration files for libthai0:amd64 (0.1.20-3) ...
Removing libdatrie1:amd64 (0.2.8-1) ...
Purging configuration files for libdatrie1:amd64 (0.2.8-1) ...
-Removing libdbus-1-3:amd64 (1.8.0-2) ...
-Purging configuration files for libdbus-1-3:amd64 (1.8.0-2) ...
-Removing libgl1-mesa-glx:amd64 (10.1.0-3) ...
-Purging configuration files for libgl1-mesa-glx:amd64 (10.1.0-3) ...
-Removing libegl1-mesa:amd64 (10.1.0-3) ...
-Purging configuration files for libegl1-mesa:amd64 (10.1.0-3) ...
-Removing libgbm1:amd64 (10.1.0-3) ...
-Purging configuration files for libgbm1:amd64 (10.1.0-3) ...
+Removing libdbus-1-3:amd64 (1.8.0-3) ...
+Purging configuration files for libdbus-1-3:amd64 (1.8.0-3) ...
+Removing libgl1-mesa-glx:amd64 (10.1.0-5) ...
+Purging configuration files for libgl1-mesa-glx:amd64 (10.1.0-5) ...
+Removing libegl1-mesa:amd64 (10.1.0-5) ...
+Purging configuration files for libegl1-mesa:amd64 (10.1.0-5) ...
+Removing libgbm1:amd64 (10.1.0-5) ...
+Purging configuration files for libgbm1:amd64 (10.1.0-5) ...
Removing libdrm2:amd64 (2.4.52-1) ...
Purging configuration files for libdrm2:amd64 (2.4.52-1) ...
Removing libexpat1:amd64 (2.1.0-4) ...
@@ -1999,10 +1967,12 @@ Removing libsndfile1:amd64 (1.0.25-9) ...
Purging configuration files for libsndfile1:amd64 (1.0.25-9) ...
Removing libflac8:amd64 (1.3.0-2) ...
Purging configuration files for libflac8:amd64 (1.3.0-2) ...
-Removing libharfbuzz0b:amd64 (0.9.26-4) ...
-Purging configuration files for libharfbuzz0b:amd64 (0.9.26-4) ...
+Removing libharfbuzz0b:amd64 (0.9.27-1) ...
+Purging configuration files for libharfbuzz0b:amd64 (0.9.27-1) ...
Removing libfreetype6:amd64 (2.5.2-1) ...
Purging configuration files for libfreetype6:amd64 (2.5.2-1) ...
+Removing libsystemd-journal0:amd64 (204-8) ...
+Purging configuration files for libsystemd-journal0:amd64 (204-8) ...
Removing libgnutls26:amd64 (2.12.23-13) ...
Purging configuration files for libgnutls26:amd64 (2.12.23-13) ...
Removing libgcrypt11:amd64 (1.5.3-4) ...
@@ -2012,20 +1982,20 @@ Purging configuration files for libgdk-pixbuf2.0-0:amd64 (2.30.6-1) ...
Removing libgdk-pixbuf2.0-common (2.30.6-1) ...
Removing libgif4:amd64 (4.1.6-11) ...
Purging configuration files for libgif4:amd64 (4.1.6-11) ...
-Removing libglapi-mesa:amd64 (10.1.0-3) ...
-Purging configuration files for libglapi-mesa:amd64 (10.1.0-3) ...
+Removing libglapi-mesa:amd64 (10.1.0-5) ...
+Purging configuration files for libglapi-mesa:amd64 (10.1.0-5) ...
Removing shared-mime-info (1.2-1) ...
Purging configuration files for shared-mime-info (1.2-1) ...
-Removing libglib2.0-0:amd64 (2.38.2-5) ...
-Purging configuration files for libglib2.0-0:amd64 (2.38.2-5) ...
+Removing libglib2.0-0:amd64 (2.40.0-2) ...
+Purging configuration files for libglib2.0-0:amd64 (2.40.0-2) ...
Removing libgpg-error0:amd64 (1.12-0.2) ...
Purging configuration files for libgpg-error0:amd64 (1.12-0.2) ...
Removing libgraphite2-3:amd64 (1.2.4-2) ...
Purging configuration files for libgraphite2-3:amd64 (1.2.4-2) ...
Removing libgssapi-krb5-2:amd64 (1.12.1+dfsg-1) ...
Purging configuration files for libgssapi-krb5-2:amd64 (1.12.1+dfsg-1) ...
-Removing libgtk2.0-common (2.24.22-1) ...
-Purging configuration files for libgtk2.0-common (2.24.22-1) ...
+Removing libgtk2.0-common (2.24.23-1) ...
+Purging configuration files for libgtk2.0-common (2.24.23-1) ...
Removing libsm6:amd64 (2:1.2.1-2) ...
Purging configuration files for libsm6:amd64 (2:1.2.1-2) ...
Removing libice6:amd64 (2:1.0.8-2) ...
@@ -2069,8 +2039,10 @@ Removing libpixman-1-0:amd64 (0.32.4-1) ...
Purging configuration files for libpixman-1-0:amd64 (0.32.4-1) ...
Removing libpng12-0:amd64 (1.2.50-1) ...
Purging configuration files for libpng12-0:amd64 (1.2.50-1) ...
-Removing libsqlite3-0:amd64 (3.8.3.1-1) ...
-Purging configuration files for libsqlite3-0:amd64 (3.8.3.1-1) ...
+Removing libsqlite3-0:amd64 (3.8.4.1-1) ...
+Purging configuration files for libsqlite3-0:amd64 (3.8.4.1-1) ...
+Removing libsystemd-id128-0:amd64 (204-8) ...
+Purging configuration files for libsystemd-id128-0:amd64 (204-8) ...
Removing libtasn1-6:amd64 (3.4-3) ...
Purging configuration files for libtasn1-6:amd64 (3.4-3) ...
Removing libthai-data (0.1.20-3) ...
@@ -2122,15 +2094,15 @@ Removing libxrender1:amd64 (1:0.9.8-1) ...
Purging configuration files for libxrender1:amd64 (1:0.9.8-1) ...
Removing libxshmfence1:amd64 (1.1-2) ...
Purging configuration files for libxshmfence1:amd64 (1.1-2) ...
-Removing tzdata-java (2014a-1) ...
+Removing tzdata-java (2014b-1) ...
Removing ucf (3.0027+nmu1) ...
Purging configuration files for ucf (3.0027+nmu1) ...
-Removing x11-common (1:7.7+6) ...
+Removing x11-common (1:7.7+7) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common (1:7.7+6) ...
-Removing libffi6:amd64 (3.0.13-12) ...
-Purging configuration files for libffi6:amd64 (3.0.13-12) ...
+Purging configuration files for x11-common (1:7.7+7) ...
+Removing libffi6:amd64 (3.1~rc1+r3.0.13-12) ...
+Purging configuration files for libffi6:amd64 (3.1~rc1+r3.0.13-12) ...
Removing libxext6:amd64 (2:1.3.2-1) ...
Purging configuration files for libxext6:amd64 (2:1.3.2-1) ...
Removing libx11-6:amd64 (2:1.6.2-1) ...
@@ -2149,21 +2121,20 @@ Processing triggers for libc-bin (2.18-4) ...
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: amd64
-Build-Space: 91432
-Build-Time: 44
+Build-Space: 92976
+Build-Time: 51
Distribution: unstable
Host Architecture: amd64
-Install-Time: 194
-Job: picard-tools_1.109-1.dsc
+Install-Time: 150
+Job: picard-tools_1.110-1.dsc
Lintian: pass
Machine Architecture: amd64
Package: picard-tools
-Package-Time: 250
-Source-Version: 1.109-1
-Space: 91432
+Package-Time: 210
+Source-Version: 1.110-1
+Space: 92976
Status: successful
-Version: 1.109-1
+Version: 1.110-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20140322-1151
-Build needed 00:04:10, 91432k disc space
-
+Finished at 20140406-1111
+Build needed 00:03:30, 92976k disc space
diff --git a/dsc b/dsc
index a8d615b..a7d3e8e 100644
--- a/dsc
+++ b/dsc
@@ -5,41 +5,41 @@ Format: 3.0 (quilt)
Source: picard-tools
Binary: libsam-java, picard-tools
Architecture: all
-Version: 1.109-1
+Version: 1.110-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Shaun Jackman <sjackman at debian.org>, Charles Plessy <plessy at debian.org>, Olivier Sallou <osallou at debian.org>
Homepage: http://picard.sourceforge.net/
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/picard-tools.git
Vcs-Git: git://anonscm.debian.org/debian-med/picard-tools.git
-Build-Depends: ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper (>= 0.25), python
+Build-Depends: ant, default-jdk, testng, libsnappy1.0.3-java, debhelper (>= 9), libjbzip2-java, libcofoja-java, libcommons-jexl2-java, javahelper, python
Package-List:
libsam-java deb java optional
picard-tools deb science optional
Checksums-Sha1:
- 61be1bc86f3a05701dd6d9d9cb28975a36599109 13570976 picard-tools_1.109.orig.tar.xz
- 3626c637bb10e20cecece6fbdb9ab0916560526d 9408 picard-tools_1.109-1.debian.tar.xz
+ 45f2d830475f643f37301df8916aa6d2591584de 14109708 picard-tools_1.110.orig.tar.xz
+ 36a02761fe7bc86b484fa56f43df6ab54204e3e3 9476 picard-tools_1.110-1.debian.tar.xz
Checksums-Sha256:
- c38dc75987d37c9344ccc91a39718d965a6bd07b31d1014bbee3941d4d2b462c 13570976 picard-tools_1.109.orig.tar.xz
- 5c5c76cf54f89e839c892e6809a1f46c1cd91673f2bb3b0ea540dc3335256c5b 9408 picard-tools_1.109-1.debian.tar.xz
+ 5274fa042a9df7e45d6591140206ce4c6bc9c5f1f5a4abc69476dadd0d420300 14109708 picard-tools_1.110.orig.tar.xz
+ b4dbef1a65299d2bffb8903f2542583f0484012f01832f79df4538e2e3cf61e9 9476 picard-tools_1.110-1.debian.tar.xz
Files:
- 032b4a14db51ef27891a72a40853520c 13570976 picard-tools_1.109.orig.tar.xz
- d3c6936156c995f8e9d9e32daa03de46 9408 picard-tools_1.109-1.debian.tar.xz
+ bc3a0bf301948efa9be5e113486fc23d 14109708 picard-tools_1.110.orig.tar.xz
+ 4c34b437509bb0b0d3469097c287992e 9476 picard-tools_1.110-1.debian.tar.xz
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diff --git a/upload b/upload
index b23c816..8908fdf 100644
--- a/upload
+++ b/upload
@@ -1,7 +1,7 @@
-u libsam-java_1.109-1_all.deb ftp.upload.debian.org Sat Mar 22 12:19:26 2014
-u picard-tools_1.109-1_all.deb ftp.upload.debian.org Sat Mar 22 12:19:29 2014
-u picard-tools_1.109-1.debian.tar.xz ftp.upload.debian.org Sat Mar 22 12:19:31 2014
-u picard-tools_1.109.orig.tar.xz ftp.upload.debian.org Sat Mar 22 12:19:42 2014
-u picard-tools_1.109-1.dsc ftp.upload.debian.org Sat Mar 22 12:19:43 2014
-u picard-tools_1.109-1_amd64.changes ftp.upload.debian.org Sat Mar 22 12:19:44 2014
-s picard-tools_1.109-1_amd64.changes ftp.upload.debian.org Sat Mar 22 12:19:44 2014
+u picard-tools_1.110-1.debian.tar.xz ftp.upload.debian.org Sun Apr 6 11:29:01 2014
+u libsam-java_1.110-1_all.deb ftp.upload.debian.org Sun Apr 6 11:29:04 2014
+u picard-tools_1.110.orig.tar.xz ftp.upload.debian.org Sun Apr 6 11:29:11 2014
+u picard-tools_1.110-1.dsc ftp.upload.debian.org Sun Apr 6 11:29:12 2014
+u picard-tools_1.110-1_all.deb ftp.upload.debian.org Sun Apr 6 11:29:16 2014
+u picard-tools_1.110-1_amd64.changes ftp.upload.debian.org Sun Apr 6 11:29:17 2014
+s picard-tools_1.110-1_amd64.changes ftp.upload.debian.org Sun Apr 6 11:29:17 2014
--
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