[med-svn] r16618 - trunk/packages/cassiopee/trunk/debian

[Olivier Sallou]

Author: osallou
Date: 2014-04-08 15:16:52 +0000 (Tue, 08 Apr 2014)
New Revision: 16618

Added:
   trunk/packages/cassiopee/trunk/debian/cassiopee.man1
   trunk/packages/cassiopee/trunk/debian/cassiopeeknife.man1
Log:
add man pages

Added: trunk/packages/cassiopee/trunk/debian/cassiopee.man1
===================================================================
--- trunk/packages/cassiopee/trunk/debian/cassiopee.man1	                        (rev 0)
+++ trunk/packages/cassiopee/trunk/debian/cassiopee.man1	2014-04-08 15:16:52 UTC (rev 16618)
@@ -0,0 +1,54 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.45.1.
+.TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
+.SH NAME
+Cassiopee \- manual page for Cassiopee Version 1.0
+.SH DESCRIPTION
+.SS "Usage:"
+.HP
+\fB\-u\fR: save index for later use
+.HP
+\fB\-s\fR: sequence to index
+.HP
+\fB\-p\fR: pattern to search
+.HP
+\fB\-f\fR: file containing pattern to search
+.HP
+\fB\-o\fR: output file
+.HP
+\fB\-r\fR: apply tree reduction
+.HP
+\fB\-m\fR: search mode: 0=DNA, 1=RNA, 2=Protein
+.HP
+\fB\-a\fR: allow alphabet ambiguity search
+.HP
+\fB\-n\fR: max consecutive N allowed matches in search
+.HP
+\fB\-e\fR: max substitution allowed matches in search
+.HP
+\fB\-i\fR: max indel allowed matches in search
+.HP
+\fB\-g\fR: generates a dot file of the graph
+.HP
+\fB\-d\fR: max depth of the graph
+.HP
+\fB\-t\fR: output format: 0:tsv (default), 1:json
+.HP
+\fB\-x\fR: minimum position in sequence
+.HP
+\fB\-y\fR: maximum position in sequence
+.HP
+\fB\-v\fR: show version
+.HP
+\fB\-h\fR: show this message
+.SH "SEE ALSO"
+The full documentation for
+.B Cassiopee
+is maintained as a Texinfo manual.  If the
+.B info
+and
+.B Cassiopee
+programs are properly installed at your site, the command
+.IP
+.B info Cassiopee
+.PP
+should give you access to the complete manual.

Added: trunk/packages/cassiopee/trunk/debian/cassiopeeknife.man1
===================================================================
--- trunk/packages/cassiopee/trunk/debian/cassiopeeknife.man1	                        (rev 0)
+++ trunk/packages/cassiopee/trunk/debian/cassiopeeknife.man1	2014-04-08 15:16:52 UTC (rev 16618)
@@ -0,0 +1,26 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.45.1.
+.TH CASSIOPEE "1" "April 2014" "Cassiopee Version 1.0" "User Commands"
+.SH NAME
+Cassiopee \- cassiopeeknife
+.SH DESCRIPTION
+.SS "Usage:"
+.HP
+\fB\-s\fR: sequence to convert
+.HP
+\fB\-o\fR: output file
+.HP
+\fB\-v\fR: show version
+.HP
+\fB\-h\fR: show this message
+.SH "SEE ALSO"
+The full documentation for
+.B Cassiopee
+is maintained as a Texinfo manual.  If the
+.B info
+and
+.B Cassiopee
+programs are properly installed at your site, the command
+.IP
+.B info Cassiopee
+.PP
+should give you access to the complete manual.