[med-svn] r16626 - trunk/packages/smalt/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2014-04-09 10:44:51 +0000 (Wed, 09 Apr 2014)
New Revision: 16626

Removed:
   trunk/packages/smalt/trunk/debian/patches/exclude_bam_cigar_test.patch
Log:
Patch split into two parts


Deleted: trunk/packages/smalt/trunk/debian/patches/exclude_bam_cigar_test.patch
===================================================================
--- trunk/packages/smalt/trunk/debian/patches/exclude_bam_cigar_test.patch	2014-04-09 10:39:55 UTC (rev 16625)
+++ trunk/packages/smalt/trunk/debian/patches/exclude_bam_cigar_test.patch	2014-04-09 10:44:51 UTC (rev 16626)
@@ -1,43 +0,0 @@
---- a/test/Makefile.am
-+++ b/test/Makefile.am
-@@ -1,4 +1,6 @@
- ## Process this file with automake to produce Makefile.in
-+AUTOMAKE_OPTIONS = subdir-objects
-+
- DIST_SUBDIRS = data
- 
- INCLUDE_PATTERN = -I%
-@@ -87,11 +89,11 @@ endif
- 
- TESTS += ${TEST_DRIVERS}
- 
--if WITH_BAMBAMC
-+if WITH_SAMTOOLS_EXEC
- TESTS += ioform_test.py xali_test.py
- endif
- 
--if WITH_SAMTOOLS_EXEC
-+if WITH_BAMBAMC
- TESTS += bam_cigar_test.py
- endif
- 
---- a/misc/Makefile.am
-+++ b/misc/Makefile.am
-@@ -1,4 +1,6 @@
- ## Process this file with automake to produce Makefile.in
-+AUTOMAKE_OPTIONS = subdir-objects
-+
- AM_CFLAGS = -I../src/
- if ICC_COMPILER
- if ICC_MMIC
---- a/configure.ac
-+++ b/configure.ac
-@@ -35,7 +35,7 @@ AC_PROG_CC([icc gcc cc])
- # AM_PROG_CC_C_O
- 
- # we use a archiver, so add support for unusual archivers
--# AM_PROG_AR
-+AM_PROG_AR
- 
- # find pkg-config tests
- PKG_PROG_PKG_CONFIG