[med-svn] [bambamc] 02/02: Inject initial packaging adapted from upstream

Sun Apr 13 06:42:29 UTC 2014

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tille pushed a commit to branch master
in repository bambamc.

commit df3df1e32afbf102256802ced03057db714bca25
Author: Andreas Tille <tille at debian.org>
Date:   Sun Apr 13 08:34:42 2014 +0200

    Inject initial packaging adapted from upstream
---
 debian/changelog              |  5 +++++
 debian/compat                 |  1 +
 debian/control                | 30 ++++++++++++++++++++++++++++++
 debian/copyright              | 31 +++++++++++++++++++++++++++++++
 debian/libbambamc-dev.install |  5 +++++
 debian/libbambamc.install     |  2 ++
 debian/rules                  |  7 +++++++
 debian/source/format          |  1 +
 debian/watch                  |  3 +++
 9 files changed, 85 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..cf1ff7f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+bambamc (0.0.49-1) UNRELEASED; urgency=low
+
+  * Initial upload (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Sun, 13 Apr 2014 08:12:10 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..ab583fe
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,30 @@
+Source: bambamc
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+           German Tischler <gt1 at sanger.ac.uk>
+Standards-Version: 3.9.5
+Build-Depends: debhelper (>= 9),  autoconf (>= 2.61), automake (>= 1.10), libtool (>= 2.2.6), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3)
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/bambamc.git
+Vcs-Git: git://anonscm.debian.org/debian-med/bambamc.git
+Homepage: https://github.com/gt1/bambamc
+
+Package: libbambamc
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Runtime library for reading and writing BAM (genome alignment) files
+ The BAM Format is a binary format for storing sequence data.  This is a
+ lightweight C implementation of the read name collation code from the
+ larger bambam C++ project to handle BAM file input and BAM file output.
+
+Package: libbambamc-dev
+Section: libdevel
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, libbambamc (= ${binary:Version}), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3)
+Description: Development files for reading and writing BAM (genome alignment) files
+ The BAM Format is a binary format for storing sequence data.  This is a
+ lightweight C implementation of the read name collation code from the
+ larger bambam C++ project to handle BAM file input and BAM file output.
+ .
+ This package contains the static library and header files.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..c998338
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,31 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: bambamc
+Source: https://github.com/gt1/bambamc
+
+Files: *
+Copyright: Copyright (C) 2009-2013 German Tischler
+           Copyright (C) 2011-2013 Genome Research Limited
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
+
+Files: src/bambamc/BamBam_Hash.c
+Copyright: Copyright 1996 Bob Jenkins <bob_jenkins at burtleburtle.net>
+License: public-domain
+ By Bob Jenkins, 1996.  bob_jenkins at burtleburtle.net.  You may use this
+ code any way you wish, private, educational, or commercial.  It's free.
+ See http://burlteburtle.net/bob/hash/evahash.html
diff --git a/debian/libbambamc-dev.install b/debian/libbambamc-dev.install
new file mode 100644
index 0000000..7cca718
--- /dev/null
+++ b/debian/libbambamc-dev.install
@@ -0,0 +1,5 @@
+usr/include
+usr/lib/libbambamc.so
+usr/lib/libbambamc.a
+usr/lib/*.la
+usr/lib/pkgconfig
diff --git a/debian/libbambamc.install b/debian/libbambamc.install
new file mode 100644
index 0000000..5722521
--- /dev/null
+++ b/debian/libbambamc.install
@@ -0,0 +1,2 @@
+usr/lib/libbambamc.so.*
+
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..75a8307
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+%:
+	dh $@ 
+
+override_dh_auto_configure:
+	autoreconf -i -f
+	dh_auto_configure
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..1d08e0e
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=uversionmangle=s/_/./g \
+  https://github.com/gt1/bambamc/releases .*/archive/bambamc_(\d[\d._]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)

-- 
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