[med-svn] [bwa] 02/02: Merge tag 'upstream/0.7.8'

[Andreas Tille]

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tille pushed a commit to branch master
in repository bwa.

commit 7606fcb62a9d294c761d52f3502b30a3d9d23b8f
Merge: 16f82d8 e513f4d
Author: Andreas Tille <tille at debian.org>
Date:   Sun Apr 13 08:52:52 2014 +0200

    Merge tag 'upstream/0.7.8'
    
    Upstream version 0.7.8

 Makefile      |   2 +-
 NEWS          |  32 +++++++++++++
 bwa.1         |  26 +++++++---
 bwa.c         |  32 +++++++++----
 bwa.h         |   2 +
 bwamem.c      |  97 +++++++++++++++++++++++++++-----------
 bwamem.h      |   5 +-
 bwamem_pair.c |  16 ++++---
 bwt.h         |   8 ++--
 bwt_lite.c    |   2 +-
 bwt_lite.h    |   6 +--
 fastmap.c     | 125 +++++++++++++++++++++++++++++++++---------------
 ksw.c         | 149 +++++++++++++++++++++++++++++++++++-----------------------
 ksw.h         |   3 ++
 main.c        |   2 +-
 15 files changed, 354 insertions(+), 153 deletions(-)

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