[med-svn] [bwa] branch upstream updated (b93d335 -> e513f4d)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository bwa.

      from  b93d335   Imported Upstream version 0.7.7
       new  e513f4d   Imported Upstream version 0.7.8

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile      |   2 +-
 NEWS          |  32 +++++++++++++
 bwa.1         |  26 +++++++---
 bwa.c         |  32 +++++++++----
 bwa.h         |   2 +
 bwamem.c      |  97 +++++++++++++++++++++++++++-----------
 bwamem.h      |   5 +-
 bwamem_pair.c |  16 ++++---
 bwt.h         |   8 ++--
 bwt_lite.c    |   2 +-
 bwt_lite.h    |   6 +--
 fastmap.c     | 125 +++++++++++++++++++++++++++++++++---------------
 ksw.c         | 149 +++++++++++++++++++++++++++++++++++-----------------------
 ksw.h         |   3 ++
 main.c        |   2 +-
 15 files changed, 354 insertions(+), 153 deletions(-)

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