[med-svn] r16679 - trunk/packages/smalt/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-04-13 09:39:56 +0000 (Sun, 13 Apr 2014)
New Revision: 16679

Modified:
   trunk/packages/smalt/trunk/debian/control
   trunk/packages/smalt/trunk/debian/rules
Log:
libbambamc-dev is now in new ... enabling all features of smalt


Modified: trunk/packages/smalt/trunk/debian/control
===================================================================
--- trunk/packages/smalt/trunk/debian/control	2014-04-13 07:46:57 UTC (rev 16678)
+++ trunk/packages/smalt/trunk/debian/control	2014-04-13 09:39:56 UTC (rev 16679)
@@ -7,7 +7,8 @@
 Build-Depends: debhelper (>= 9),
                zlib1g-dev,
                python,
-               samtools
+               samtools,
+               libbambamc-dev
 Standards-Version: 3.9.5
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/smalt/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/smalt/trunk/

Modified: trunk/packages/smalt/trunk/debian/rules
===================================================================
--- trunk/packages/smalt/trunk/debian/rules	2014-04-13 07:46:57 UTC (rev 16678)
+++ trunk/packages/smalt/trunk/debian/rules	2014-04-13 09:39:56 UTC (rev 16679)
@@ -23,8 +23,8 @@
 # Attention: As long as we do not have bambamc library packaged for
 #            Debian this needs to be excluded
 #            The packaging of the library is planed but not yet accomplished
-override_dh_auto_configure:
-	dh_auto_configure -- --with-bambamc=no
+#override_dh_auto_configure:
+#	dh_auto_configure -- --with-bambamc=no
 
 override_dh_auto_install:
 	# upstream install does install more files than needed
@@ -38,12 +38,12 @@
 
 override_dh_auto_clean:
 	dh_auto_clean
-	rm -fr test/*.pyc test/tmp
+	rm -rf test/*.pyc misc/*.pyc test/tmp
 
-override_dh_auto_test:
-	# Hack around the erronuous test/Makefile.am to not do a test requiring bambamc
-	sed -i 's/bam_cigar_test\.py//' test/Makefile
-	dh_auto_test
+#override_dh_auto_test:
+#	# Hack around the erronuous test/Makefile.am to not do a test requiring bambamc
+#	sed -i 's/bam_cigar_test\.py//' test/Makefile
+#	dh_auto_test
 
 #get-orig-source:
 #	. debian/get-orig-source