[med-svn] [bowtie2] 05/06: Merge tag 'upstream/2.2.2'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository bowtie2.

commit 9f72f42d108a3556af6f2f805437b19b210797e1
Merge: f27a14e 2eb8a65
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Tue Apr 15 13:37:01 2014 +0200

    Merge tag 'upstream/2.2.2'
    
    Upstream version 2.2.2

 MANUAL          |  5 +++--
 MANUAL.markdown |  5 +++--
 NEWS            |  4 ++++
 VERSION         |  2 +-
 doc/manual.html |  2 +-
 reference.cpp   | 34 ++++++++++++++++++++++++++++------
 reference.h     |  9 ++++++---
 7 files changed, 46 insertions(+), 15 deletions(-)

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