[med-svn] [varscan] 02/02: Some very basic debian/ dir

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository varscan.

commit a7b759795090e7eae48f67bf93846203a142859c
Author: Andreas Tille <tille at debian.org>
Date:   Tue Apr 15 21:52:58 2014 +0200

    Some very basic debian/ dir
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 19 +++++++++++++++++++
 debian/copyright         | 14 ++++++++++++++
 debian/createmanpages    |  9 +++++++++
 debian/rules             | 23 +++++++++++++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 12 ++++++++++++
 debian/watch             |  3 +++
 9 files changed, 87 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..961d122
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+varscan (2.3.6+dfsg-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Thu, 24 May 2012 14:30:13 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..1305617
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,19 @@
+Source: varscan
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/varscan/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/varscan/trunk/
+Homepage: http://varscan.sourceforge.net/
+
+Package: varscan
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: variant detection in next-generation sequencing data 
+ Variant detection in massively parallel sequencing. For one sample,
+ calls SNPs, indels, and consensus genotypes. For tumor-normal pairs,
+ further classifies each variant as Germline, Somatic, or LOH, and also
+ detects somatic copy number changes.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..ba82f3b
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,14 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: VarScan
+Source: http://sourceforge.net/projects/varscan/files/
+Files-Excluded:
+    *.class
+    META-INF
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>
diff --git a/debian/createmanpages b/debian/createmanpages
new file mode 100755
index 0000000..54e3376
--- /dev/null
+++ b/debian/createmanpages
@@ -0,0 +1,9 @@
+#!/bin/sh
+MANDIR=debian/mans
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//'`
+
+help2man --no-info --no-discard-stderr --help-option=" " \
+         --name='<optional description of the program>' \
+            --version-string="$VERSION" <programname> > $MANDIR/<programname>.1
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..58ec00b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..d8b5812
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author: 
+  Title: 
+  Journal: 
+  Year: 
+  Volume: 
+  Number: 
+  Pages: 
+  DOI: 
+  PMID:
+  URL: 
+  eprint: 
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..a41a6d6
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=dversionmangle=s/[~\+]dfsg[0-9]*// \
+ http://sf.net/varscan/VarScan\.v(\d[\d\.]+)\.source\.(?:jar|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/varscan.git