[med-svn] r16768 - trunk/packages/python-biopython/trunk/debian

[Andreas Tille]

Author: tille
Date: 2014-04-24 08:53:32 +0000 (Thu, 24 Apr 2014)
New Revision: 16768

Modified:
   trunk/packages/python-biopython/trunk/debian/clean
   trunk/packages/python-biopython/trunk/debian/rules
Log:
Fix test suite run


Modified: trunk/packages/python-biopython/trunk/debian/clean
===================================================================
--- trunk/packages/python-biopython/trunk/debian/clean	2014-04-24 07:03:47 UTC (rev 16767)
+++ trunk/packages/python-biopython/trunk/debian/clean	2014-04-24 08:53:32 UTC (rev 16768)
@@ -1,5 +1,5 @@
-Tests/BWA/1.sai
-Tests/BWA/1.sam
+Tests/BWA/*.sai
+Tests/BWA/*.sam
 Tests/BWA/human_g1k_v37_truncated.fasta.*
 Tests/Clustalw/temp*
 Tests/Graphics/*.*

Modified: trunk/packages/python-biopython/trunk/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2014-04-24 07:03:47 UTC (rev 16767)
+++ trunk/packages/python-biopython/trunk/debian/rules	2014-04-24 08:53:32 UTC (rev 16768)
@@ -42,7 +42,7 @@
 	# to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set
 	#  dh_auto_test -- --test --system=custom --test-args='env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss PYTHONPATH={build_dir} {interpreter} setup.py test'
 	#  (the line above prefers package's root directory over sys.path; according to Piotr Ożarowski this can be prevented by:
-	dh_auto_test -- --test --system=custom --test-args='cd {build_dir}; env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss {interpreter} ../setup.py test'
+	dh_auto_test -- --test --system=custom --test-args='cd {build_dir}; env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss {interpreter} $(CURDIR)/setup.py test'
 	mv Tests_avoid/* Tests
 	rmdir Tests_avoid