[med-svn] r16784 - trunk/packages/python-biopython/trunk/debian/Tests_fixme

[Andreas Tille]

Author: tille
Date: 2014-04-25 07:42:32 +0000 (Fri, 25 Apr 2014)
New Revision: 16784

Modified:
   trunk/packages/python-biopython/trunk/debian/Tests_fixme/run_failing_tests
Log:
Fixed and enhanced test script


Modified: trunk/packages/python-biopython/trunk/debian/Tests_fixme/run_failing_tests
===================================================================
--- trunk/packages/python-biopython/trunk/debian/Tests_fixme/run_failing_tests	2014-04-25 07:27:49 UTC (rev 16783)
+++ trunk/packages/python-biopython/trunk/debian/Tests_fixme/run_failing_tests	2014-04-25 07:42:32 UTC (rev 16784)
@@ -8,28 +8,29 @@
 fi
 
 DOC=/usr/share/doc/python-biopython-doc/
-TESTS=$DOC/Tests
+DATA=$DOC/Tests
+TESTS=$DOC/Tests_avoid
 
 mkdir $ADTTMP/Tests
 cp -a run_failed_tests.py $ADTTMP/Tests
 
 cd $ADTTMP
 mkdir Doc
-cp -a $DOC/Doc/Tutorial.tex*			Doc
+cp -a $DOC/Doc/Tutorial.tex*		Doc
 cd Tests
 mkdir Clustalw
 mkdir Fasta
-cp -a $TESTS/Fasta/f00[12]*			Fasta
+cp -a $DATA/Fasta/f00[12]*		Fasta
 mkdir GenBank
-cp -a $TESTS/GenBank/NC_005816.gb*		GenBank
+cp -a $DATA/GenBank/NC_005816.gb*	GenBank
 mkdir Graphics
-cp -a $TESTS/Graphics/README*			Graphics
+cp -a $DATA/Graphics/README*		Graphics
 mkdir Medline
-cp -a $TESTS/Medline/pubmed_result1.txt*	Medline
+cp -a $DATA/Medline/pubmed_result1.txt*	Medline
 mkdir Phylip
-cp -a $TESTS/Phylip/hennigian.phy*		Phylip
+cp -a $DATA/Phylip/hennigian.phy*	Phylip
 mkdir Quality
-cp -a $TESTS/Quality/example.fasta*		Quality
+cp -a $DATA/Quality/example.fasta*	Quality
 
 FAILINGTESTS="GenomeDiagram Fasttree_tool Mafft_tool ColorSpiral trie"
 for ft in $FAILINGTESTS ; do
@@ -39,7 +40,12 @@
 
 for ft in $FAILINGTESTS ; do
     for pi in $(pyversions -i) $(py3versions -i); do
-	$pi run_failed_tests.py -v test_$ft 2>&1 | tee > ../${ft}_${pi}.log
+        $pi run_failed_tests.py -v test_$ft 2>&1 | tee > ../${ft}_${pi}.log
+        if grep -qwi fail ../${ft}_${pi}.log ; then
+            echo "Test ${ft} with ${pi}: FAIL"
+        else
+            echo "Test ${ft} with ${pi}: ok"
+        fi
     done
 done
 rm -fr *.pyc __pycache__