[med-svn] r16847 - in trunk/packages/circos/tags: . 0.66-1/debian 0.66-1/debian/patches
Olivier Sallou
osallou at moszumanska.debian.org
Tue Apr 29 06:24:15 UTC 2014
Author: osallou
Date: 2014-04-29 06:24:15 +0000 (Tue, 29 Apr 2014)
New Revision: 16847
Added:
trunk/packages/circos/tags/0.66-1/
trunk/packages/circos/tags/0.66-1/debian/changelog
trunk/packages/circos/tags/0.66-1/debian/control
trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc
trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage
Removed:
trunk/packages/circos/tags/0.66-1/debian/changelog
trunk/packages/circos/tags/0.66-1/debian/control
trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc
trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage
Log:
[svn-buildpackage] Tagging circos 0.66-1
Deleted: trunk/packages/circos/tags/0.66-1/debian/changelog
===================================================================
--- trunk/packages/circos/trunk/debian/changelog 2014-04-28 19:44:11 UTC (rev 16840)
+++ trunk/packages/circos/tags/0.66-1/debian/changelog 2014-04-29 06:24:15 UTC (rev 16847)
@@ -1,53 +0,0 @@
-circos (0.64-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Mon, 20 May 2013 09:01:27 +0200
-
-circos (0.62.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Fri, 21 Sep 2012 17:00:12 +0200
-
-circos (0.61-3) unstable; urgency=low
-
- * debian/control: add missing dependency (Closes: #684977).
-
- -- Olivier Sallou <osallou at debian.org> Wed, 15 Aug 2012 12:46:11 +0200
-
-circos (0.61-2) unstable; urgency=low
-
- [ Olivier Sallou ]
- * debian/control:
- - Update description (Closes: #682802).
- - Rename otf-symbols-circos to fonts-circos-symbols to fit the Font
- Packages Naming Policy.
- - Move to Standards 3.9.3
-
- -- Olivier Sallou <osallou at debian.org> Thu, 14 Jun 2012 13:46:15 +0200
-
-circos (0.61-1) unstable; urgency=low
-
- [ Olivier Sallou ]
- * New upstream release
-
- [ Charles Plessy ]
- * renamed debian/upstream-metadata.yaml to debian/upstream
-
- [ Andreas Tille ]
- * debian/upstream: enhanced citation information
-
- -- Olivier Sallou <osallou at debian.org> Thu, 14 Jun 2012 12:56:33 +0200
-
-circos (0.55-2) unstable; urgency=low
-
- * Add pre-depends on dpkg to support xz compression (required for Ubuntu)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 19 Oct 2011 14:16:18 +0200
-
-circos (0.55-1) unstable; urgency=low
-
- * First debian import (Closes: #632174)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 29 Jun 2011 12:04:57 +0200
Copied: trunk/packages/circos/tags/0.66-1/debian/changelog (from rev 16843, trunk/packages/circos/trunk/debian/changelog)
===================================================================
--- trunk/packages/circos/tags/0.66-1/debian/changelog (rev 0)
+++ trunk/packages/circos/tags/0.66-1/debian/changelog 2014-04-29 06:24:15 UTC (rev 16847)
@@ -0,0 +1,59 @@
+circos (0.66-1) unstable; urgency=medium
+
+ * New usptream release
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 29 Apr 2014 08:02:58 +0200
+
+circos (0.64-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 20 May 2013 09:01:27 +0200
+
+circos (0.62.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 21 Sep 2012 17:00:12 +0200
+
+circos (0.61-3) unstable; urgency=low
+
+ * debian/control: add missing dependency (Closes: #684977).
+
+ -- Olivier Sallou <osallou at debian.org> Wed, 15 Aug 2012 12:46:11 +0200
+
+circos (0.61-2) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * debian/control:
+ - Update description (Closes: #682802).
+ - Rename otf-symbols-circos to fonts-circos-symbols to fit the Font
+ Packages Naming Policy.
+ - Move to Standards 3.9.3
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 14 Jun 2012 13:46:15 +0200
+
+circos (0.61-1) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * New upstream release
+
+ [ Charles Plessy ]
+ * renamed debian/upstream-metadata.yaml to debian/upstream
+
+ [ Andreas Tille ]
+ * debian/upstream: enhanced citation information
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 14 Jun 2012 12:56:33 +0200
+
+circos (0.55-2) unstable; urgency=low
+
+ * Add pre-depends on dpkg to support xz compression (required for Ubuntu)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 19 Oct 2011 14:16:18 +0200
+
+circos (0.55-1) unstable; urgency=low
+
+ * First debian import (Closes: #632174)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 29 Jun 2011 12:04:57 +0200
Deleted: trunk/packages/circos/tags/0.66-1/debian/control
===================================================================
--- trunk/packages/circos/trunk/debian/control 2014-04-28 19:44:11 UTC (rev 16840)
+++ trunk/packages/circos/tags/0.66-1/debian/control 2014-04-29 06:24:15 UTC (rev 16847)
@@ -1,55 +0,0 @@
-Source: circos
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>,
-DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 8.0.0)
-Standards-Version: 3.9.3
-Homepage: http://circos.ca/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/circos/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos/
-
-Package: circos
-Architecture: all
-Pre-Depends: dpkg (>= 1.15.6)
-Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), fonts-circos-symbols, fonts-cmu,
- libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5),
- libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl,
- libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl,
- libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl,
- libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl,
- libtext-format-perl, libfont-ttf-perl, libclone-perl
-Recommends: circos-tools
-Description: plotter for visualizing data
- Circos visualizes data in a circular layout — ideal for exploring
- relationships between objects or positions, and creating highly
- informative publication-quality graphics.
- .
- This package provides the Circos plotting engine, which is command-line
- driven (like gnuplot) and fully scriptable.
-
-Package: otf-symbols-circos
-Pre-Depends: dpkg (>= 1.15.6)
-Depends: fonts-circos-symbols, ${misc:Depends}
-Architecture: all
-Section: oldlibs
-Priority: extra
-Description: transitional dummy package
- This package is a dummy transitional package. It can be safely removed.
-
-
-Package: fonts-circos-symbols
-Replaces: otf-symbols-circos (<< 0.61-2)
-Conflicts: otf-symbols-circos (<< 0.61-2)
-Provides: otf-symbols-circos
-Section: fonts
-Architecture: all
-Pre-Depends: dpkg (>= 1.15.6)
-Depends: ${misc:Depends}
-Description: plotter for visualizing data - standard fonts
- Circos visualizes data in a circular layout — ideal for exploring
- relationships between objects or positions, and creating highly
- informative publication-quality graphics.
- .
- This package provides a set of fonts used by default with Circos.
Copied: trunk/packages/circos/tags/0.66-1/debian/control (from rev 16843, trunk/packages/circos/trunk/debian/control)
===================================================================
--- trunk/packages/circos/tags/0.66-1/debian/control (rev 0)
+++ trunk/packages/circos/tags/0.66-1/debian/control 2014-04-29 06:24:15 UTC (rev 16847)
@@ -0,0 +1,55 @@
+Source: circos
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>,
+Build-Depends: debhelper (>= 8.0.0)
+Standards-Version: 3.9.5
+Homepage: http://circos.ca/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/circos/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/circos/
+
+Package: circos
+Architecture: all
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), fonts-circos-symbols, fonts-cmu,
+ libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5),
+ libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl,
+ libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl,
+ libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl,
+ libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl,
+ libtext-format-perl, libfont-ttf-perl, libclone-perl
+Recommends: circos-tools
+Description: plotter for visualizing data
+ Circos visualizes data in a circular layout — ideal for exploring
+ relationships between objects or positions, and creating highly
+ informative publication-quality graphics.
+ .
+ This package provides the Circos plotting engine, which is command-line
+ driven (like gnuplot) and fully scriptable.
+
+Package: otf-symbols-circos
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: fonts-circos-symbols, ${misc:Depends}
+Architecture: all
+Section: oldlibs
+Priority: extra
+Description: transitional dummy package
+ This package is a dummy transitional package. It can be safely removed.
+
+
+Package: fonts-circos-symbols
+Replaces: otf-symbols-circos (<< 0.61-2)
+Conflicts: otf-symbols-circos (<< 0.61-2)
+Provides: otf-symbols-circos
+Section: fonts
+Architecture: all
+Multi-Arch: foreign
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${misc:Depends}
+Description: plotter for visualizing data - standard fonts
+ Circos visualizes data in a circular layout — ideal for exploring
+ relationships between objects or positions, and creating highly
+ informative publication-quality graphics.
+ .
+ This package provides a set of fonts used by default with Circos.
Deleted: trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc
===================================================================
--- trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2014-04-28 19:44:11 UTC (rev 16840)
+++ trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc 2014-04-29 06:24:15 UTC (rev 16847)
@@ -1,33 +0,0 @@
-Description: Add Debian directories in search path
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Last-Update: 2012-09-21
-Forwarded: not-needed
---- a/lib/Circos/Configuration.pm
-+++ b/lib/Circos/Configuration.pm
-@@ -693,6 +693,7 @@
- }
-
- my @configpath = (
-+ "/etc/circos",
- dirname($file),
- dirname($file)."/etc",
- "$FindBin::RealBin/etc",
---- a/etc/makehuesteps
-+++ b/etc/makehuesteps
-@@ -1,4 +1,4 @@
--#!/bin/env perl
-+#!/usr/bin/env perl
-
- use strict;
- use Math::Round qw(round);
---- a/lib/Circos/Utils.pm
-+++ b/lib/Circos/Utils.pm
-@@ -441,7 +441,7 @@
-
- # look for the file in various directories
- # v0.63 added configuration directory to dir_1
-- my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin);
-+ my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin,"/usr/share/circos");
- my @dir_2 = qw(. .. ../.. ../../..);
- my @dir_3 = qw(. etc data);
-
Copied: trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc (from rev 16841, trunk/packages/circos/trunk/debian/patches/configpath_add_etc)
===================================================================
--- trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc (rev 0)
+++ trunk/packages/circos/tags/0.66-1/debian/patches/configpath_add_etc 2014-04-29 06:24:15 UTC (rev 16847)
@@ -0,0 +1,33 @@
+Description: Add Debian directories in search path
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Last-Update: 2012-09-21
+Forwarded: not-needed
+--- a/lib/Circos/Configuration.pm
++++ b/lib/Circos/Configuration.pm
+@@ -707,6 +707,7 @@
+ }
+
+ my @configpath = (
++ "/etc/circos",
+ dirname($file),
+ dirname($file)."/etc",
+ "$FindBin::RealBin/etc",
+--- a/etc/makehuesteps
++++ b/etc/makehuesteps
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ use strict;
+ use Math::Round qw(round);
+--- a/lib/Circos/Utils.pm
++++ b/lib/Circos/Utils.pm
+@@ -498,7 +498,7 @@
+ }
+
+ # v0.63 added configuration directory to dir_1
+- my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin);
++ my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin,"/usr/share/circos");
+ my @dir_2 = qw(. .. ../.. ../../..);
+ my @dir_3 = qw(. etc data);
+
Deleted: trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage
===================================================================
--- trunk/packages/circos/trunk/debian/patches/fix_manpage 2014-04-28 19:44:11 UTC (rev 16840)
+++ trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage 2014-04-29 06:24:15 UTC (rev 16847)
@@ -1,25 +0,0 @@
-Subject: fix errors from pod2man result
-Description: Perl file used as source for man page contains errors.
-Author: Olivier Sallou <osallou at debian.org>
-Last-Updated: 2013-05-20
-Forwarded: No
---- a/lib/Circos.pm
-+++ b/lib/Circos.pm
-@@ -7,7 +7,7 @@
-
- =head1 NAME
-
--Circos - Circular data visualizations for comparison of genomes, among other things
-+Circos \- Circular data visualizations for comparison of genomes, among other things
-
- =head1 SYNOPSIS
-
-@@ -6736,7 +6736,7 @@
-
- =over
-
--item * Hive plots
-+=item * Hive plots
-
- L<http://www.hiveplot.com>
-
Copied: trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage (from rev 16841, trunk/packages/circos/trunk/debian/patches/fix_manpage)
===================================================================
--- trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage (rev 0)
+++ trunk/packages/circos/tags/0.66-1/debian/patches/fix_manpage 2014-04-29 06:24:15 UTC (rev 16847)
@@ -0,0 +1,25 @@
+Subject: fix errors from pod2man result
+Description: Perl file used as source for man page contains errors.
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2013-05-20
+Forwarded: No
+--- a/lib/Circos.pm
++++ b/lib/Circos.pm
+@@ -7,7 +7,7 @@
+
+ =head1 NAME
+
+-Circos - Circular data visualizations for comparison of genomes, among other things
++Circos \- Circular data visualizations for comparison of genomes, among other things
+
+ =head1 SYNOPSIS
+
+@@ -6879,7 +6879,7 @@
+
+ =over
+
+-item * Hive plots
++=item * Hive plots
+
+ L<http://www.hiveplot.com>
+
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