[med-svn] r16853 - in trunk/packages/mobyle/mobyle/tags: . 1.5.3+dfsg-1/debian 1.5.3+dfsg-1/debian/patches
Olivier Sallou
osallou at moszumanska.debian.org
Tue Apr 29 06:41:07 UTC 2014
Author: osallou
Date: 2014-04-29 06:41:07 +0000 (Tue, 29 Apr 2014)
New Revision: 16853
Added:
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/mobyle.lintian-overrides
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome
Removed:
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control
trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome
Log:
[svn-buildpackage] Tagging mobyle 1.5.3+dfsg-1
Deleted: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/README.source 2014-04-29 06:12:38 UTC (rev 16845)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source 2014-04-29 06:41:07 UTC (rev 16853)
@@ -1,19 +0,0 @@
-Mobyle needs to be downloaded with get-orig-source.
-Some copyright files need to be removed from upstream source (no impact on software).
-Other files are removed at the same time because those are available in debian packages (javascript,fonts...)
-
-Lintian warnings:
-
-Directories are present for use by user to place his programs (symlink from /var/lib)
-
-I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Programs/
-I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Viewers/
-I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Workflows/
-I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Tutorials/
-
-mobyle-setid is a small C program used by mobyle internally which explains it is not have a
- nice description nor man page.
-
-I: mobyle-utils: extended-description-is-probably-too-short
-W: mobyle-utils: binary-without-manpage usr/bin/mobyle-setsid
-
Copied: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source (from rev 16849, trunk/packages/mobyle/mobyle/trunk/debian/README.source)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/README.source 2014-04-29 06:41:07 UTC (rev 16853)
@@ -0,0 +1,24 @@
+Mobyle needs to be downloaded with get-orig-source.
+Some copyright files need to be removed from upstream source (no impact on software).
+Other files are removed at the same time because those are available in debian packages (javascript,fonts...)
+
+Lintian warnings:
+
+Directories are present for use by user to place his programs (symlink from /var/lib)
+
+I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Programs/
+I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Viewers/
+I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Workflows/
+I: mobyle: package-contains-empty-directory usr/share/mobyle/core/Local/Services/Tutorials/
+
+mobyle-setid is a small C program used by mobyle internally which explains it is not have a
+ nice description nor man page.
+
+I: mobyle-utils: extended-description-is-probably-too-short
+W: mobyle-utils: binary-without-manpage usr/bin/mobyle-setsid
+
+
+
+1 lintian error "privacy-breach" is overriden because:
+ - this is not AdSense but Google analytics which is used
+ - this option is not activated by default but by user configuration
Deleted: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/changelog 2014-04-29 06:12:38 UTC (rev 16845)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog 2014-04-29 06:41:07 UTC (rev 16853)
@@ -1,95 +0,0 @@
-mobyle (1.5.1+dfsg-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Tue, 30 Jul 2013 16:01:45 +0200
-
-mobyle (1.5.0+dfsg-2) unstable; urgency=low
-
- * Transition to Apache 2.4 (Closes: #669884).
-
- -- Olivier Sallou <osallou at debian.org> Fri, 31 May 2013 13:11:20 +0200
-
-mobyle (1.5.0+dfsg-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Mon, 18 Feb 2013 12:11:44 +0100
-
-mobyle (1.0.7+dfsg-1) unstable; urgency=low
-
- [ Olivier Sallou ]
- * New upstream release
- * debian/get-orig-source: Normalised versioning (~dfsg -> +dfsg)
-
- [ Andreas Tille ]
- * debian/copyright:
- - DEP5
- - Add Files-Excluded to document what was removed from original source
- * debian/watch: Normalised versioning (~dfsg -> +dfsg)
-
- -- Olivier Sallou <osallou at debian.org> Tue, 04 Sep 2012 13:27:00 +0200
-
-mobyle (1.0.6~dfsg-1) unstable; urgency=low
-
- * New upstream release
-
- -- Olivier Sallou <osallou at debian.org> Mon, 25 Jun 2012 15:55:39 +0200
-
-mobyle (1.0.5~dfsg-2) unstable; urgency=low
-
- * Add postrm for clean purge.
-
- -- Olivier Sallou <osallou at debian.org> Sun, 03 Jun 2012 13:36:48 +0200
-
-mobyle (1.0.5~dfsg-1) unstable; urgency=low
-
- * New upstream release
- * debian/patches/defaultconfig: add phylip binary path
- * debian/control: remove some recommends
- [ Andreas Tille ]
- * debian/upstream: Added citations
-
- -- Olivier Sallou <osallou at debian.org> Tue, 22 May 2012 17:53:24 +0200
-
-mobyle (1.0.4~dfsg-3) unstable; urgency=low
-
- * Use invoke-rc.d instead of service command to restart
- apache as per Debian policy (Closes: #656078)
- * Remove zx compression
- * Add doc-base
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 16 Jan 2012 11:43:31 +0100
-
-mobyle (1.0.4~dfsg-2) unstable; urgency=low
-
- * Add missing dep on python-pygraphviz for workflows
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Tue, 13 Dec 2011 13:48:42 +0100
-
-mobyle (1.0.4~dfsg-1) unstable; urgency=low
-
- * New upstream version.
- - Possible break in previous xml program description,
- see README.Debian file for more info
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 07 Dec 2011 17:20:09 +0100
-
-mobyle (1.0.3~dfsg-1) unstable; urgency=low
-
- * New upstream release (bug fixes)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 02 Nov 2011 12:08:19 +0100
-
-mobyle (1.0.2~dfsg-2) unstable; urgency=low
-
- * debian/rules : Thanks to A. Ucko
- - fix issue when building arch depandant only package (Closes: #644277)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Oct 2011 13:35:00 +0900
-
-mobyle (1.0.2~dfsg-1) unstable; urgency=low
-
- * Initial release (Closes: #637230)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 03 Oct 2011 12:56:44 +0900
Copied: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog (from rev 16850, trunk/packages/mobyle/mobyle/trunk/debian/changelog)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/changelog 2014-04-29 06:41:07 UTC (rev 16853)
@@ -0,0 +1,101 @@
+mobyle (1.5.3+dfsg-1) unstable; urgency=medium
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 29 Apr 2014 08:22:48 +0200
+
+mobyle (1.5.1+dfsg-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 30 Jul 2013 16:01:45 +0200
+
+mobyle (1.5.0+dfsg-2) unstable; urgency=low
+
+ * Transition to Apache 2.4 (Closes: #669884).
+
+ -- Olivier Sallou <osallou at debian.org> Fri, 31 May 2013 13:11:20 +0200
+
+mobyle (1.5.0+dfsg-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 18 Feb 2013 12:11:44 +0100
+
+mobyle (1.0.7+dfsg-1) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * New upstream release
+ * debian/get-orig-source: Normalised versioning (~dfsg -> +dfsg)
+
+ [ Andreas Tille ]
+ * debian/copyright:
+ - DEP5
+ - Add Files-Excluded to document what was removed from original source
+ * debian/watch: Normalised versioning (~dfsg -> +dfsg)
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 04 Sep 2012 13:27:00 +0200
+
+mobyle (1.0.6~dfsg-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Olivier Sallou <osallou at debian.org> Mon, 25 Jun 2012 15:55:39 +0200
+
+mobyle (1.0.5~dfsg-2) unstable; urgency=low
+
+ * Add postrm for clean purge.
+
+ -- Olivier Sallou <osallou at debian.org> Sun, 03 Jun 2012 13:36:48 +0200
+
+mobyle (1.0.5~dfsg-1) unstable; urgency=low
+
+ * New upstream release
+ * debian/patches/defaultconfig: add phylip binary path
+ * debian/control: remove some recommends
+ [ Andreas Tille ]
+ * debian/upstream: Added citations
+
+ -- Olivier Sallou <osallou at debian.org> Tue, 22 May 2012 17:53:24 +0200
+
+mobyle (1.0.4~dfsg-3) unstable; urgency=low
+
+ * Use invoke-rc.d instead of service command to restart
+ apache as per Debian policy (Closes: #656078)
+ * Remove zx compression
+ * Add doc-base
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 16 Jan 2012 11:43:31 +0100
+
+mobyle (1.0.4~dfsg-2) unstable; urgency=low
+
+ * Add missing dep on python-pygraphviz for workflows
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Tue, 13 Dec 2011 13:48:42 +0100
+
+mobyle (1.0.4~dfsg-1) unstable; urgency=low
+
+ * New upstream version.
+ - Possible break in previous xml program description,
+ see README.Debian file for more info
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 07 Dec 2011 17:20:09 +0100
+
+mobyle (1.0.3~dfsg-1) unstable; urgency=low
+
+ * New upstream release (bug fixes)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 02 Nov 2011 12:08:19 +0100
+
+mobyle (1.0.2~dfsg-2) unstable; urgency=low
+
+ * debian/rules : Thanks to A. Ucko
+ - fix issue when building arch depandant only package (Closes: #644277)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 05 Oct 2011 13:35:00 +0900
+
+mobyle (1.0.2~dfsg-1) unstable; urgency=low
+
+ * Initial release (Closes: #637230)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Mon, 03 Oct 2011 12:56:44 +0900
Deleted: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/control 2014-04-29 06:12:38 UTC (rev 16845)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control 2014-04-29 06:41:07 UTC (rev 16853)
@@ -1,49 +0,0 @@
-Source: mobyle
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <osallou at debian.org>
-Build-Depends: debhelper (>= 9), python (>= 2.5),
- python-simpletal (>=4.1),
- python-simplejson (>= 1.7.1),
- python-imaging (>= 1.1.5),
- python-lxml (>= 2.2.4),
- dh-apache2
-Standards-Version: 3.9.4
-Homepage: https://projets.pasteur.fr/projects/show/mobyle
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mobyle/mobyle/trunk/
-Vcs-Svn: svn://anonsvn.debian.org/debian-med/trunk/packages/mobyle/mobyle/trunk/
-
-Package: mobyle
-Architecture: all
-Depends: ${misc:Depends}, python (>= 2.5), apache2 (>= 2.4) | httpd-cgi,
- libjs-scriptaculous, libjs-jquery, libjs-prototype,
- mobyle-utils,
- jing,
- python-biopython,
- python-imaging (>= 1.1.5),
- python-lxml (>= 2.2.4),
- python-pygraphviz,
- python-simplejson (>= 1.7.1),
- python-simpletal (>=4.1),
- python-simpletal (<< 5.0~),
- python-support (>= 0.90),
- squizz (>=0.99b+dfsg),
- ttf-bitstream-vera
-Suggests: python-openid (>= 2.2.4), python-dnspython (>= 1.5.0)
-Recommends: mobyle-programs (>= 3.1), mobyle-tutorials, ${misc:Recommends}
-Description: Web portal that provides web forms for command-line software
- Mobyle is a framework and web portal specifically aimed at the integration of
- bioinformatics software and databanks. It generates a web interface from an xml
- description for command-line based tools.
- It can submit jobs locally or using DRM systems.
- .
- This package will restart Apache after enabling the ‘rewrite’ and ‘headers’
- modules.
-
-Package: mobyle-utils
-Architecture: any
-Depends: ${misc:Depends},${shlibs:Depends}
-Description: binary tools used by Mobyle
- Binary tools used by the Mobyle web portal to manage
- jobs.
Copied: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control (from rev 16849, trunk/packages/mobyle/mobyle/trunk/debian/control)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/control 2014-04-29 06:41:07 UTC (rev 16853)
@@ -0,0 +1,49 @@
+Source: mobyle
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <osallou at debian.org>
+Build-Depends: debhelper (>= 9), python (>= 2.5),
+ python-simpletal (>=4.1),
+ python-simplejson (>= 1.7.1),
+ python-imaging (>= 1.1.5),
+ python-lxml (>= 2.2.4),
+ dh-apache2, apache2-dev
+Standards-Version: 3.9.5
+Homepage: https://projets.pasteur.fr/projects/show/mobyle
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mobyle/mobyle/trunk/
+Vcs-Svn: svn://anonsvn.debian.org/debian-med/trunk/packages/mobyle/mobyle/trunk/
+
+Package: mobyle
+Architecture: all
+Depends: ${misc:Depends}, python (>= 2.5), apache2 (>= 2.4) | httpd-cgi,
+ libjs-scriptaculous, libjs-jquery, libjs-prototype,
+ mobyle-utils,
+ jing,
+ python-biopython,
+ python-imaging (>= 1.1.5),
+ python-lxml (>= 2.2.4),
+ python-pygraphviz,
+ python-simplejson (>= 1.7.1),
+ python-simpletal (>=4.1),
+ python-simpletal (<< 5.0~),
+ python-support (>= 0.90),
+ squizz (>=0.99b+dfsg),
+ ttf-bitstream-vera
+Suggests: python-openid (>= 2.2.4), python-dnspython (>= 1.5.0)
+Recommends: mobyle-programs (>= 3.1), mobyle-tutorials, ${misc:Recommends}
+Description: Web portal that provides web forms for command-line software
+ Mobyle is a framework and web portal specifically aimed at the integration of
+ bioinformatics software and databanks. It generates a web interface from an xml
+ description for command-line based tools.
+ It can submit jobs locally or using DRM systems.
+ .
+ This package will restart Apache after enabling the ‘rewrite’ and ‘headers’
+ modules.
+
+Package: mobyle-utils
+Architecture: any
+Depends: ${misc:Depends},${shlibs:Depends}
+Description: binary tools used by Mobyle
+ Binary tools used by the Mobyle web portal to manage
+ jobs.
Copied: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/mobyle.lintian-overrides (from rev 16849, trunk/packages/mobyle/mobyle/trunk/debian/mobyle.lintian-overrides)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/mobyle.lintian-overrides (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/mobyle.lintian-overrides 2014-04-29 06:41:07 UTC (rev 16853)
@@ -0,0 +1 @@
+mobyle: privacy-breach-google-adsense usr/share/mobyle/htdocs/portal/js/mobyle_ga.js
Deleted: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome
===================================================================
--- trunk/packages/mobyle/mobyle/trunk/debian/patches/change_mobylehome 2014-04-29 06:12:38 UTC (rev 16845)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome 2014-04-29 06:41:07 UTC (rev 16853)
@@ -1,17 +0,0 @@
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Description: Change the Mobyle path in generated path to fit to Debian paths
-Last-Update: 2011-08-09
---- a/setup.py
-+++ b/setup.py
-@@ -147,9 +147,9 @@
- if not l:
- break
- if mob and l == 'MOBYLEHOME = None\n':
-- l = l.replace('None', "'"+mob+"'", 1)
-+ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/core'", 1)
- if htm and l == 'MOBYLEHTDOCS = None\n':
-- l = l.replace('None', "'"+htm+"'", 1)
-+ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/htdocs'", 1)
- g.write(l)
- g.close()
- f.close()
Copied: trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome (from rev 16848, trunk/packages/mobyle/mobyle/trunk/debian/patches/change_mobylehome)
===================================================================
--- trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome (rev 0)
+++ trunk/packages/mobyle/mobyle/tags/1.5.3+dfsg-1/debian/patches/change_mobylehome 2014-04-29 06:41:07 UTC (rev 16853)
@@ -0,0 +1,17 @@
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Description: Change the Mobyle path in generated path to fit to Debian paths
+Last-Update: 2011-08-09
+--- a/setup.py
++++ b/setup.py
+@@ -148,9 +148,9 @@
+ if not l:
+ break
+ if mob and l == 'MOBYLEHOME = None\n':
+- l = l.replace('None', "'"+mob+"'", 1)
++ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/core'", 1)
+ if htm and l == 'MOBYLEHTDOCS = None\n':
+- l = l.replace('None', "'"+htm+"'", 1)
++ l = l.replace('None', "'debian/mobyle/usr/share/mobyle/htdocs'", 1)
+ g.write(l)
+ g.close()
+ f.close()
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