[med-svn] r16860 - in trunk/packages/python-biopython/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-04-30 21:50:32 +0000 (Wed, 30 Apr 2014)
New Revision: 16860

Added:
   trunk/packages/python-biopython/trunk/debian/patches/remove_mathml-qname.patch
Modified:
   trunk/packages/python-biopython/trunk/debian/changelog
   trunk/packages/python-biopython/trunk/debian/copyright
   trunk/packages/python-biopython/trunk/debian/patches/series
   trunk/packages/python-biopython/trunk/debian/watch
Log:
Remove Bio\Entrez\DTDs\mathml2-qname-1.mod


Modified: trunk/packages/python-biopython/trunk/debian/changelog
===================================================================
--- trunk/packages/python-biopython/trunk/debian/changelog	2014-04-29 13:59:03 UTC (rev 16859)
+++ trunk/packages/python-biopython/trunk/debian/changelog	2014-04-30 21:50:32 UTC (rev 16860)
@@ -1,3 +1,10 @@
+python-biopython (1.63+dfsg-1) unstable; urgency=medium
+
+  * Remove Bio\Entrez\DTDs\mathml2-qname-1.mod
+    Closes: #746484
+
+ -- Andreas Tille <tille at debian.org>  Wed, 30 Apr 2014 14:47:53 +0200
+
 python-biopython (1.63-2) unstable; urgency=medium
 
   * Enable Python3

Modified: trunk/packages/python-biopython/trunk/debian/copyright
===================================================================
--- trunk/packages/python-biopython/trunk/debian/copyright	2014-04-29 13:59:03 UTC (rev 16859)
+++ trunk/packages/python-biopython/trunk/debian/copyright	2014-04-30 21:50:32 UTC (rev 16860)
@@ -4,6 +4,7 @@
                   https://github.com/biopython/biopython/issues
                   Peter Cock <p.j.a.cock at googlemail.com>
 Source: http://biopython.org/DIST/
+Files-Excluded: Bio/Entrez/DTDs/mathml2-qname-1.mod
 
 Files: *
 Copyright: © 2002-2009 Biopython contributors

Added: trunk/packages/python-biopython/trunk/debian/patches/remove_mathml-qname.patch
===================================================================
--- trunk/packages/python-biopython/trunk/debian/patches/remove_mathml-qname.patch	                        (rev 0)
+++ trunk/packages/python-biopython/trunk/debian/patches/remove_mathml-qname.patch	2014-04-30 21:50:32 UTC (rev 16860)
@@ -0,0 +1,22 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 30 Apr 2014 14:47:53 +0200
+Bugs-Debian: http://bugs.debian.org/746484
+Forwarded-Upstream: yes
+Description: Remove non DFSG free DTD
+
+--- a/Bio/Entrez/DTDs/modules.ent
++++ b/Bio/Entrez/DTDs/modules.ent
+@@ -350,13 +350,6 @@ Version  Reason/Occasion
+ "mathmlsetup.ent"                                                    >
+ 
+ 
+-<!--                    MATHML 2.0 QUALIFIED NAMES                 -->
+-<!ENTITY % mathml-qname.mod 
+-                        PUBLIC
+-"-//W3C//ENTITIES MathML 2.0 Qualified Names 1.0//EN" 
+-"mathml/mathml2-qname-1.mod"                                         >
+-
+-
+ <!--                    MATHML 2.0 DTD                             -->
+ <!ENTITY % mathml.dtd   PUBLIC
+ "-//W3C//DTD MathML 2.0//EN"

Modified: trunk/packages/python-biopython/trunk/debian/patches/series
===================================================================
--- trunk/packages/python-biopython/trunk/debian/patches/series	2014-04-29 13:59:03 UTC (rev 16859)
+++ trunk/packages/python-biopython/trunk/debian/patches/series	2014-04-30 21:50:32 UTC (rev 16860)
@@ -2,3 +2,4 @@
 add_missing_test_Fasttree_tool.patch
 use_upstream_patch_for_bwa_test.patch
 biopython-from-pil-import-image.patch
+remove_mathml-qname.patch

Modified: trunk/packages/python-biopython/trunk/debian/watch
===================================================================
--- trunk/packages/python-biopython/trunk/debian/watch	2014-04-29 13:59:03 UTC (rev 16859)
+++ trunk/packages/python-biopython/trunk/debian/watch	2014-04-30 21:50:32 UTC (rev 16860)
@@ -1,6 +1,4 @@
-# Compulsory line, this is a version 3 file
 version=3
 
-opts="uversionmangle=s/b/~b/" \
-http://biopython.org/DIST/biopython-(.\.\w+)\.tar\.gz \
-	debian uupdate
+opts="uversionmangle=s/b/~b/,dversionmangle=s/\+dfsg//" \
+  http://biopython.org/DIST/biopython-(.\.\w+)\.tar\.gz