[med-svn] [python-mne] branch master updated (ae8bf5a -> e8d9cfb)
Alexandre Gramfort
agramfort-guest at moszumanska.debian.org
Fri Aug 1 22:13:50 UTC 2014
This is an automated email from the git hooks/post-receive script.
agramfort-guest pushed a change to branch master
in repository python-mne.
from ae8bf5a New upstream version closes bug
adds ad96eb9 Imported Upstream version 0.7.3
new 653a682 Imported Upstream version 0.8
new 47508c8 Merge tag 'upstream/0.8'
new 3ae2bf9 update copyright
new e8d9cfb update changelog
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.coveragerc | 8 +
.gitignore | 4 +
.mailmap | 14 +
.travis.yml | 84 +-
Makefile | 7 +-
README.rst | 3 +-
bin/mne | 18 +-
debian/changelog | 6 +
debian/copyright | 193 +-
doc/source/cite.rst | 6 +-
doc/source/contributing.rst | 4 +
doc/source/getting_started.rst | 203 +-
doc/source/index.rst | 12 +
doc/source/manual/cookbook.rst | 2 +-
doc/source/mne-python.rst | 1 +
doc/source/mne_report_tutorial.rst | 117 +
doc/source/python_reference.rst | 200 +-
doc/source/python_tutorial.rst | 86 +-
doc/source/whats_new.rst | 227 ++
doc/sphinxext/gen_rst.py | 33 +-
.../connectivity/plot_cwt_sensor_connectivity.py | 10 +-
.../plot_mne_inverse_coherence_epochs.py | 16 +-
.../plot_mne_inverse_connectivity_spectrum.py | 11 +-
.../plot_mne_inverse_label_connectivity.py | 43 +-
.../connectivity/plot_mne_inverse_psi_visual.py | 8 +-
examples/connectivity/plot_sensor_connectivity.py | 8 +-
examples/{ => datasets}/plot_megsim_data.py | 18 +-
.../plot_megsim_data_single_trial.py | 5 +-
examples/datasets/plot_spm_faces_dataset.py | 68 +-
examples/decoding/plot_decoding_csp_eeg.py | 150 +
examples/decoding/plot_decoding_csp_space.py | 20 +-
examples/decoding/plot_decoding_sensors.py | 14 +-
.../plot_decoding_spatio_temporal_source.py | 28 +-
.../decoding/plot_decoding_time_generalization.py | 91 +
examples/decoding/plot_ems_filtering.py | 94 +
examples/export/plot_epochs_as_data_frame.py | 16 +-
examples/export/plot_epochs_to_nitime.py | 14 +-
examples/export/plot_evoked_to_nitime.py | 12 +-
examples/export/plot_raw_to_nitime.py | 22 +-
examples/extract_events_from_raw.py | 31 -
examples/inverse/plot_compute_mne_inverse.py | 18 +-
.../plot_compute_mne_inverse_epochs_in_label.py | 73 +-
.../plot_compute_mne_inverse_raw_in_label.py | 6 +-
.../inverse/plot_compute_mne_inverse_volume.py | 8 +-
examples/inverse/plot_dics_beamformer.py | 8 +-
examples/inverse/plot_dics_source_power.py | 24 +-
examples/inverse/plot_dipole_fit_result.py | 10 +-
examples/inverse/plot_gamma_map_inverse.py | 11 +-
examples/inverse/plot_label_activation_from_stc.py | 2 +-
examples/inverse/plot_label_from_stc.py | 17 +-
examples/inverse/plot_label_source_activations.py | 9 +-
examples/inverse/plot_lcmv_beamformer.py | 10 +-
examples/inverse/plot_lcmv_beamformer_volume.py | 10 +-
examples/inverse/plot_make_inverse_operator.py | 9 +-
examples/inverse/plot_mixed_norm_L21_inverse.py | 21 +-
examples/inverse/plot_mne_crosstalk_function.py | 83 +
examples/inverse/plot_mne_point_spread_function.py | 102 +
examples/inverse/plot_morph_data.py | 4 +-
examples/inverse/plot_read_inverse.py | 12 +-
examples/inverse/plot_read_source_space.py | 6 +-
examples/inverse/plot_read_stc.py | 8 +-
examples/inverse/plot_tf_dics.py | 51 +-
examples/inverse/plot_tf_lcmv.py | 48 +-
.../plot_time_frequency_mixed_norm_inverse.py | 19 +-
examples/plot_bem_contour_mri.py | 25 +
examples/plot_channel_epochs_image.py | 12 +-
examples/plot_coregistration_transform.py | 31 +
examples/plot_decimate_head_surface.py | 4 +-
examples/plot_define_target_events.py | 16 +-
.../plot_estimate_covariance_matrix_baseline.py | 16 +-
examples/plot_estimate_covariance_matrix_raw.py | 16 +-
examples/plot_evoked_delayed_ssp.py | 17 +-
examples/plot_evoked_topomap.py | 78 +-
examples/plot_evoked_topomap_delayed_ssp.py | 14 +-
examples/plot_evoked_whitening.py | 19 +-
examples/plot_extract_events_from_raw.py | 41 +
examples/plot_from_raw_to_epochs_to_evoked.py | 27 +-
.../plot_from_raw_to_multiple_epochs_to_evoked.py | 14 +-
examples/plot_make_forward.py | 27 +-
examples/plot_meg_eeg_fields_3d.py | 37 +
examples/plot_read_and_write_raw_data.py | 14 +-
examples/plot_read_bem_surfaces.py | 6 +-
examples/plot_read_epochs.py | 15 +-
examples/plot_read_evoked.py | 19 +-
examples/plot_read_forward.py | 8 +-
examples/plot_read_noise_covariance_matrix.py | 6 +-
examples/plot_shift_evoked.py | 15 +-
examples/plot_simulate_evoked_data.py | 29 +-
examples/plot_ssp_projs_sensitivity_map.py | 15 +-
examples/plot_ssp_projs_topomaps.py | 20 +-
examples/plot_topo_channel_epochs_image.py | 14 +-
examples/plot_topo_compare_conditions.py | 12 +-
examples/plot_topo_customized.py | 62 +
examples/plot_topography.py | 9 +-
.../preprocessing/plot_eog_artifact_histogram.py | 49 +
examples/preprocessing/plot_find_ecg_artifacts.py | 14 +-
examples/preprocessing/plot_find_eog_artifacts.py | 12 +-
examples/preprocessing/plot_ica_from_epochs.py | 142 +-
examples/preprocessing/plot_ica_from_raw.py | 200 +-
examples/read_events.py | 8 +-
examples/realtime/ftclient_rt_average.py | 90 +
examples/realtime/plot_compute_rt_average.py | 10 +-
examples/realtime/plot_compute_rt_decoder.py | 10 +-
examples/realtime/rt_feedback_client.py | 2 +-
examples/realtime/rt_feedback_server.py | 12 +-
.../plot_cluster_1samp_test_time_frequency.py | 14 +-
examples/stats/plot_cluster_methods_tutorial.py | 2 +-
examples/stats/plot_cluster_stats_evoked.py | 12 +-
.../stats/plot_cluster_stats_spatio_temporal.py | 20 +-
.../plot_cluster_stats_spatio_temporal_2samp.py | 12 +-
...tats_spatio_temporal_repeated_measures_anova.py | 37 +-
.../stats/plot_cluster_stats_time_frequency.py | 12 +-
...stats_time_frequency_repeated_measures_anova.py | 16 +-
examples/stats/plot_fdr_stats_evoked.py | 12 +-
examples/stats/plot_sensor_permutation_test.py | 50 +-
examples/stats/plot_sensor_regression.py | 79 +
.../plot_compute_raw_data_spectrum.py | 13 +-
.../plot_compute_source_psd_epochs.py | 6 +-
.../time_frequency/plot_single_trial_spectra.py | 24 +-
.../plot_source_label_time_frequency.py | 10 +-
.../time_frequency/plot_source_power_spectrum.py | 14 +-
.../plot_source_space_time_frequency.py | 10 +-
examples/time_frequency/plot_temporal_whitening.py | 8 +-
examples/time_frequency/plot_tfr_topography.py | 80 -
examples/time_frequency/plot_time_frequency.py | 95 -
.../time_frequency/plot_time_frequency_sensors.py | 65 +
mne/__init__.py | 35 +-
mne/_hdf5.py | 167 +
mne/baseline.py | 2 +-
mne/beamformer/_dics.py | 19 +-
mne/beamformer/_lcmv.py | 35 +-
mne/beamformer/tests/test_dics.py | 16 +-
mne/beamformer/tests/test_lcmv.py | 40 +-
mne/channels.py | 343 ++
mne/commands/mne_browse_raw.py | 2 +-
mne/commands/mne_bti2fiff.py | 6 +-
mne/commands/mne_clean_eog_ecg.py | 29 +-
mne/commands/mne_compute_proj_ecg.py | 16 +-
mne/commands/mne_compute_proj_eog.py | 16 +-
mne/commands/mne_coreg.py | 24 +
mne/commands/mne_flash_bem_model.py | 9 +-
mne/commands/mne_kit2fiff.py | 12 +-
mne/commands/mne_make_scalp_surfaces.py | 40 +-
mne/commands/mne_report.py | 52 +
mne/commands/mne_surf2bem.py | 5 +-
mne/commands/utils.py | 11 +-
mne/connectivity/effective.py | 7 +-
mne/connectivity/spectral.py | 23 +-
mne/connectivity/tests/test_spectral.py | 2 +-
mne/coreg.py | 237 +-
mne/cov.py | 206 +-
mne/cuda.py | 26 +-
mne/data/helmets/122m.fif.gz | Bin 0 -> 4706 bytes
mne/data/helmets/306m.fif.gz | Bin 0 -> 9462 bytes
mne/data/helmets/306m_rt.fif.gz | Bin 0 -> 9443 bytes
mne/data/helmets/BabySQUID.fif.gz | Bin 0 -> 59505 bytes
mne/data/helmets/CTF_275.fif.gz | Bin 0 -> 9561 bytes
mne/data/helmets/KIT.fif.gz | Bin 0 -> 9477 bytes
mne/data/helmets/Magnes_2500wh.fif.gz | Bin 0 -> 9470 bytes
mne/data/helmets/Magnes_3600wh.fif.gz | Bin 0 -> 9475 bytes
mne/datasets/__init__.py | 4 +-
mne/datasets/eegbci/__init__.py | 4 +
mne/datasets/eegbci/eegbci.py | 203 ++
mne/datasets/megsim/megsim.py | 44 +-
mne/datasets/sample/sample.py | 17 +-
mne/datasets/somato/__init__.py | 4 +
mne/datasets/somato/somato.py | 35 +
mne/datasets/spm_face/spm_data.py | 14 +-
mne/datasets/utils.py | 91 +-
mne/decoding/__init__.py | 4 +-
mne/decoding/classifier.py | 29 +-
mne/decoding/csp.py | 15 +-
mne/decoding/ems.py | 117 +
mne/decoding/tests/test_classifier.py | 28 +-
mne/decoding/tests/test_csp.py | 14 +-
mne/decoding/tests/test_ems.py | 58 +
mne/decoding/tests/test_time_gen.py | 44 +
mne/decoding/time_gen.py | 123 +
mne/dipole.py | 2 +-
mne/epochs.py | 738 ++++-
mne/event.py | 88 +-
mne/{fiff => }/evoked.py | 650 +++-
mne/externals/FieldTrip.py | 508 +++
mne/externals/__init__.py | 4 +
mne/externals/decorator.py | 253 ++
mne/externals/jdcal.py | 116 +
mne/externals/six.py | 577 ++++
mne/externals/tempita/__init__.py | 1303 ++++++++
mne/externals/tempita/_looper.py | 163 +
mne/externals/tempita/compat3.py | 45 +
mne/fiff/__init__.py | 90 +-
mne/fiff/brainvision/brainvision.py | 529 ---
mne/fiff/brainvision/tests/test_brainvision.py | 75 -
mne/fiff/bti/__init__.py | 5 -
mne/fiff/channels.py | 35 -
mne/fiff/cov.py | 182 -
mne/fiff/edf/tests/test_edf.py | 92 -
mne/fiff/tests/test_evoked.py | 207 --
mne/filter.py | 138 +-
mne/fixes.py | 74 +-
mne/forward/__init__.py | 4 +-
mne/forward/_compute_forward.py | 31 +-
mne/forward/_field_interpolation.py | 286 ++
mne/forward/_lead_dots.py | 309 ++
mne/forward/_make_forward.py | 74 +-
mne/forward/forward.py | 154 +-
mne/forward/tests/test_field_interpolation.py | 153 +
mne/forward/tests/test_forward.py | 41 +-
mne/forward/tests/test_make_forward.py | 47 +-
mne/gui/__init__.py | 8 +-
mne/gui/_coreg_gui.py | 117 +-
mne/gui/_fiducials_gui.py | 9 +-
mne/gui/_file_traits.py | 226 +-
mne/gui/_kit2fiff_gui.py | 66 +-
mne/gui/_marker_gui.py | 17 +-
mne/gui/_viewer.py | 3 +-
mne/gui/tests/test_coreg_gui.py | 16 +-
mne/gui/tests/test_file_traits.py | 11 +-
mne/gui/tests/test_kit2fiff_gui.py | 31 +-
mne/gui/tests/test_marker_gui.py | 33 +-
mne/html/bootstrap.min.css | 7 +
mne/html/bootstrap.min.js | 7 +
mne/html/d3.v3.min.js | 5 +
mne/html/jquery-1.10.2.min.js | 6 +
mne/html/jquery-ui.min.css | 6 +
mne/html/jquery-ui.min.js | 12 +
mne/html/mpld3.v0.2.min.js | 2 +
mne/inverse_sparse/__init__.py | 2 +-
mne/inverse_sparse/_gamma_map.py | 10 +-
mne/inverse_sparse/mxne_debiasing.py | 4 +-
mne/inverse_sparse/mxne_inverse.py | 4 +-
mne/inverse_sparse/mxne_optim.py | 41 +-
mne/inverse_sparse/tests/test_gamma_map.py | 8 +-
mne/inverse_sparse/tests/test_mxne_debiasing.py | 2 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 9 +-
mne/inverse_sparse/tests/test_mxne_optim.py | 6 +-
mne/io/__init__.py | 33 +
mne/io/array/__init__.py | 5 +
mne/io/array/array.py | 65 +
mne/{fiff/bti => io/array}/tests/__init__.py | 0
mne/io/array/tests/test_array.py | 104 +
mne/{fiff/raw.py => io/base.py} | 873 ++---
mne/{fiff => io}/brainvision/__init__.py | 0
mne/io/brainvision/brainvision.py | 684 ++++
mne/{fiff => io}/brainvision/tests/__init__.py | 0
mne/{fiff => io}/brainvision/tests/data/test.eeg | Bin
mne/{fiff => io}/brainvision/tests/data/test.vhdr | 0
mne/{fiff => io}/brainvision/tests/data/test.vmrk | 0
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.../brainvision/tests/data/test_elp.txt | 0
mne/io/brainvision/tests/test_brainvision.py | 157 +
mne/io/bti/__init__.py | 5 +
mne/{fiff/bti/raw.py => io/bti/bti.py} | 829 ++---
mne/{fiff => io}/bti/constants.py | 4 +-
mne/{fiff => io}/bti/read.py | 10 +-
mne/{fiff/edf => io/bti}/tests/__init__.py | 0
.../bti/tests/data/exported4D_linux_raw.fif} | Bin
.../bti/tests/data/exported4D_solaris_raw.fif} | Bin
mne/{fiff => io}/bti/tests/data/test_config_linux | Bin
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mne/{fiff => io}/bti/tests/data/test_hs_linux | Bin
mne/{fiff => io}/bti/tests/data/test_hs_solaris | Bin
mne/{fiff => io}/bti/tests/data/test_pdf_linux | Bin
mne/{fiff => io}/bti/tests/data/test_pdf_solaris | Bin
mne/{fiff => io}/bti/tests/test_bti.py | 38 +-
mne/{fiff => io}/bti/transforms.py | 2 +-
mne/{fiff => io}/compensator.py | 0
mne/{fiff => io}/constants.py | 22 +-
mne/{fiff => io}/ctf.py | 5 +-
mne/{fiff => io}/diff.py | 2 +-
mne/{fiff => io}/edf/__init__.py | 0
mne/{fiff => io}/edf/edf.py | 218 +-
.../numpy_ext => mne/io/edf/tests}/__init__.py | 0
mne/{fiff => io}/edf/tests/data/biosemi.hpts | 0
mne/{fiff => io}/edf/tests/data/test.bdf | 0
mne/{fiff => io}/edf/tests/data/test.edf | 14 +-
.../edf/tests/data/test_bdf_eeglab.mat | Bin
.../edf/tests/data/test_edf_eeglab.mat | Bin
mne/{fiff => io}/edf/tests/data/test_eeglab.mat | Bin
mne/io/edf/tests/test_edf.py | 196 ++
mne/io/egi/__init__.py | 5 +
mne/io/egi/egi.py | 322 ++
.../numpy_ext => mne/io/egi/tests}/__init__.py | 0
mne/io/egi/tests/data/test_egi.raw | Bin 0 -> 80756 bytes
mne/io/egi/tests/test_egi.py | 80 +
mne/io/fiff/__init__.py | 1 +
mne/io/fiff/raw.py | 598 ++++
.../numpy_ext => mne/io/fiff/tests}/__init__.py | 0
mne/{ => io}/fiff/tests/test_raw.py | 230 +-
mne/{fiff => io}/kit/__init__.py | 3 +-
mne/{fiff => io}/kit/constants.py | 0
mne/{fiff => io}/kit/coreg.py | 47 +-
mne/{fiff => io}/kit/kit.py | 90 +-
mne/{fiff => io}/kit/tests/__init__.py | 0
mne/{fiff => io}/kit/tests/data/sns.txt | 0
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mne/{fiff => io}/kit/tests/data/test_elp.txt | 0
mne/{fiff => io}/kit/tests/data/test_hsp.txt | 0
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mne/{fiff => io}/kit/tests/test_coreg.py | 9 +-
mne/{fiff => io}/kit/tests/test_kit.py | 40 +-
mne/{fiff => io}/matrix.py | 2 +-
mne/{fiff => io}/meas_info.py | 408 ++-
mne/{fiff => io}/open.py | 47 +-
mne/{fiff => io}/pick.py | 30 +-
mne/{fiff => io}/proj.py | 73 +-
mne/{fiff => io}/tag.py | 55 +-
mne/{fiff => io}/tests/__init__.py | 0
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mne/{fiff => io}/tests/data/process_raw.sh | 0
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mne/{fiff => io}/tests/data/test-rh.label | 0
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mne/{fiff => io}/tests/data/test_bads.txt | 0
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mne/{fiff => io}/tests/data/test_empty_room.cov | 0
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mne/{fiff => io}/tests/data/test_ica.lout | 0
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mne/{fiff => io}/tests/data/test_wrong_bads.txt | 0
mne/{fiff => io}/tests/test_compensator.py | 12 +-
mne/{fiff => io}/tests/test_meas_info.py | 26 +-
mne/{fiff => io}/tests/test_pick.py | 2 +-
mne/{fiff => io}/tree.py | 17 +-
mne/{fiff => io}/write.py | 50 +-
mne/label.py | 1098 +++++--
mne/layouts/EEG1005.lay | 337 ++
mne/layouts/EGI256.lout | 259 ++
mne/layouts/KIT-157.lout | 158 +
mne/layouts/layout.py | 97 +-
mne/layouts/tests/test_layout.py | 56 +-
mne/minimum_norm/__init__.py | 3 +-
mne/minimum_norm/inverse.py | 141 +-
mne/minimum_norm/psf_ctf.py | 431 +++
mne/minimum_norm/tests/test_inverse.py | 38 +-
mne/minimum_norm/tests/test_psf_ctf.py | 79 +
mne/minimum_norm/tests/test_time_frequency.py | 18 +-
mne/minimum_norm/time_frequency.py | 44 +-
mne/misc.py | 2 +-
mne/parallel.py | 22 +-
mne/preprocessing/__init__.py | 9 +-
mne/preprocessing/bads.py | 36 +
mne/preprocessing/ctps_.py | 169 +
mne/preprocessing/ecg.py | 159 +-
mne/preprocessing/eog.py | 137 +-
mne/preprocessing/ica.py | 1741 ++++++----
mne/preprocessing/infomax_.py | 276 ++
mne/preprocessing/maxfilter.py | 11 +-
mne/preprocessing/ssp.py | 19 +-
mne/preprocessing/stim.py | 4 +-
mne/preprocessing/tests/test_ctps.py | 84 +
mne/preprocessing/tests/test_ecg.py | 13 +-
mne/preprocessing/tests/test_eog.py | 6 +-
mne/preprocessing/tests/test_ica.py | 385 ++-
mne/preprocessing/tests/test_infomax.py | 136 +
mne/preprocessing/tests/test_ssp.py | 8 +-
mne/preprocessing/tests/test_stim.py | 4 +-
mne/proj.py | 41 +-
mne/realtime/__init__.py | 1 +
mne/realtime/client.py | 19 +-
mne/realtime/epochs.py | 25 +-
mne/realtime/fieldtrip_client.py | 296 ++
mne/realtime/mockclient.py | 10 +-
mne/realtime/stim_server_client.py | 36 +-
mne/realtime/tests/test_fieldtrip_client.py | 68 +
mne/realtime/tests/test_mockclient.py | 14 +-
mne/realtime/tests/test_stim_client_server.py | 28 +-
mne/report.py | 1287 ++++++++
mne/selection.py | 5 +-
mne/simulation/evoked.py | 4 +-
mne/simulation/source.py | 8 +-
mne/simulation/tests/test_evoked.py | 27 +-
mne/source_estimate.py | 285 +-
mne/source_space.py | 237 +-
mne/stats/__init__.py | 1 +
mne/stats/cluster_level.py | 59 +-
mne/stats/multi_comp.py | 2 +-
mne/stats/parametric.py | 49 +-
mne/stats/permutations.py | 4 +-
mne/stats/regression.py | 135 +
mne/stats/tests/test_cluster_level.py | 35 +-
mne/stats/tests/test_regression.py | 67 +
mne/surface.py | 160 +-
mne/tests/test_channels.py | 109 +
mne/tests/test_coreg.py | 18 +-
mne/tests/test_cov.py | 53 +-
mne/tests/test_epochs.py | 502 ++-
mne/tests/test_event.py | 75 +-
mne/tests/test_evoked.py | 384 +++
mne/tests/test_filter.py | 34 +-
mne/tests/test_fixes.py | 21 +-
mne/tests/test_hdf5.py | 26 +
mne/tests/test_label.py | 340 +-
mne/tests/test_misc.py | 2 +-
mne/tests/test_proj.py | 49 +-
mne/tests/test_report.py | 119 +
mne/tests/test_source_estimate.py | 167 +-
mne/tests/test_source_space.py | 195 +-
mne/tests/test_surface.py | 40 +-
mne/tests/test_transforms.py | 33 +-
mne/tests/test_utils.py | 177 +-
mne/tests/test_viz.py | 511 ---
mne/time_frequency/__init__.py | 2 +-
mne/time_frequency/ar.py | 6 +-
mne/time_frequency/csd.py | 2 +-
mne/time_frequency/multitaper.py | 24 +-
mne/time_frequency/psd.py | 64 +-
mne/time_frequency/stft.py | 12 +-
mne/time_frequency/tests/test_ar.py | 12 +-
mne/time_frequency/tests/test_csd.py | 14 +-
mne/time_frequency/tests/test_multitaper.py | 16 +-
mne/time_frequency/tests/test_psd.py | 22 +-
mne/time_frequency/tests/test_stft.py | 2 +-
mne/time_frequency/tests/test_tfr.py | 72 +-
mne/time_frequency/tfr.py | 521 ++-
mne/transforms.py | 190 +-
mne/utils.py | 580 +++-
mne/viz.py | 3460 --------------------
mne/viz/_3d.py | 651 ++++
mne/viz/__init__.py | 20 +
mne/viz/circle.py | 408 +++
mne/viz/epochs.py | 451 +++
mne/viz/evoked.py | 296 ++
mne/viz/ica.py | 484 +++
mne/viz/misc.py | 521 +++
mne/viz/raw.py | 610 ++++
.../numpy_ext => mne/viz/tests}/__init__.py | 0
.../__init__.py => mne/viz/tests/__init__py | 0
mne/viz/tests/test_3d.py | 115 +
mne/viz/tests/test_circle.py | 94 +
mne/viz/tests/test_epochs.py | 117 +
mne/viz/tests/test_evoked.py | 106 +
mne/viz/tests/test_ica.py | 140 +
mne/viz/tests/test_misc.py | 114 +
mne/viz/tests/test_raw.py | 107 +
mne/viz/tests/test_topo.py | 119 +
mne/viz/tests/test_topomap.py | 131 +
mne/viz/tests/test_utils.py | 28 +
mne/viz/topo.py | 725 ++++
mne/viz/topomap.py | 1035 ++++++
mne/viz/utils.py | 364 ++
setup.cfg | 13 +-
setup.py | 42 +-
477 files changed, 31931 insertions(+), 11033 deletions(-)
create mode 100644 .coveragerc
create mode 100644 doc/source/mne_report_tutorial.rst
rename examples/{ => datasets}/plot_megsim_data.py (73%)
rename examples/{ => datasets}/plot_megsim_data_single_trial.py (91%)
create mode 100644 examples/decoding/plot_decoding_csp_eeg.py
create mode 100644 examples/decoding/plot_decoding_time_generalization.py
create mode 100644 examples/decoding/plot_ems_filtering.py
delete mode 100644 examples/extract_events_from_raw.py
create mode 100644 examples/inverse/plot_mne_crosstalk_function.py
create mode 100644 examples/inverse/plot_mne_point_spread_function.py
create mode 100644 examples/plot_bem_contour_mri.py
create mode 100644 examples/plot_coregistration_transform.py
create mode 100644 examples/plot_extract_events_from_raw.py
create mode 100644 examples/plot_meg_eeg_fields_3d.py
create mode 100644 examples/plot_topo_customized.py
create mode 100644 examples/preprocessing/plot_eog_artifact_histogram.py
create mode 100644 examples/realtime/ftclient_rt_average.py
create mode 100644 examples/stats/plot_sensor_regression.py
delete mode 100644 examples/time_frequency/plot_tfr_topography.py
delete mode 100644 examples/time_frequency/plot_time_frequency.py
create mode 100644 examples/time_frequency/plot_time_frequency_sensors.py
create mode 100644 mne/_hdf5.py
create mode 100644 mne/channels.py
create mode 100644 mne/commands/mne_coreg.py
create mode 100644 mne/commands/mne_report.py
create mode 100644 mne/data/helmets/122m.fif.gz
create mode 100644 mne/data/helmets/306m.fif.gz
create mode 100644 mne/data/helmets/306m_rt.fif.gz
create mode 100644 mne/data/helmets/BabySQUID.fif.gz
create mode 100644 mne/data/helmets/CTF_275.fif.gz
create mode 100644 mne/data/helmets/KIT.fif.gz
create mode 100644 mne/data/helmets/Magnes_2500wh.fif.gz
create mode 100644 mne/data/helmets/Magnes_3600wh.fif.gz
create mode 100644 mne/datasets/eegbci/__init__.py
create mode 100644 mne/datasets/eegbci/eegbci.py
create mode 100644 mne/datasets/somato/__init__.py
create mode 100644 mne/datasets/somato/somato.py
create mode 100644 mne/decoding/ems.py
create mode 100644 mne/decoding/tests/test_ems.py
create mode 100644 mne/decoding/tests/test_time_gen.py
create mode 100644 mne/decoding/time_gen.py
rename mne/{fiff => }/evoked.py (50%)
create mode 100644 mne/externals/FieldTrip.py
create mode 100644 mne/externals/__init__.py
create mode 100644 mne/externals/decorator.py
create mode 100644 mne/externals/jdcal.py
create mode 100644 mne/externals/six.py
create mode 100644 mne/externals/tempita/__init__.py
create mode 100644 mne/externals/tempita/_looper.py
create mode 100644 mne/externals/tempita/compat3.py
delete mode 100644 mne/fiff/brainvision/brainvision.py
delete mode 100644 mne/fiff/brainvision/tests/test_brainvision.py
delete mode 100644 mne/fiff/bti/__init__.py
delete mode 100644 mne/fiff/channels.py
delete mode 100644 mne/fiff/cov.py
delete mode 100644 mne/fiff/edf/tests/test_edf.py
delete mode 100644 mne/fiff/tests/test_evoked.py
create mode 100644 mne/forward/_field_interpolation.py
create mode 100644 mne/forward/_lead_dots.py
create mode 100644 mne/forward/tests/test_field_interpolation.py
create mode 100644 mne/html/bootstrap.min.css
create mode 100644 mne/html/bootstrap.min.js
create mode 100644 mne/html/d3.v3.min.js
create mode 100644 mne/html/jquery-1.10.2.min.js
create mode 100644 mne/html/jquery-ui.min.css
create mode 100644 mne/html/jquery-ui.min.js
create mode 100644 mne/html/mpld3.v0.2.min.js
create mode 100644 mne/io/__init__.py
create mode 100644 mne/io/array/__init__.py
create mode 100644 mne/io/array/array.py
rename mne/{fiff/bti => io/array}/tests/__init__.py (100%)
create mode 100644 mne/io/array/tests/test_array.py
rename mne/{fiff/raw.py => io/base.py} (71%)
rename mne/{fiff => io}/brainvision/__init__.py (100%)
create mode 100644 mne/io/brainvision/brainvision.py
rename mne/{fiff => io}/brainvision/tests/__init__.py (100%)
rename mne/{fiff => io}/brainvision/tests/data/test.eeg (100%)
rename mne/{fiff => io}/brainvision/tests/data/test.vhdr (100%)
rename mne/{fiff => io}/brainvision/tests/data/test.vmrk (100%)
rename mne/{fiff => io}/brainvision/tests/data/test_bin_raw.fif (100%)
rename mne/{fiff => io}/brainvision/tests/data/test_elp.txt (100%)
create mode 100644 mne/io/brainvision/tests/test_brainvision.py
create mode 100644 mne/io/bti/__init__.py
rename mne/{fiff/bti/raw.py => io/bti/bti.py} (58%)
rename mne/{fiff => io}/bti/constants.py (96%)
rename mne/{fiff => io}/bti/read.py (90%)
rename mne/{fiff/edf => io/bti}/tests/__init__.py (100%)
rename mne/{fiff/bti/tests/data/exported4D_linux.fif => io/bti/tests/data/exported4D_linux_raw.fif} (100%)
rename mne/{fiff/bti/tests/data/exported4D_solaris.fif => io/bti/tests/data/exported4D_solaris_raw.fif} (100%)
rename mne/{fiff => io}/bti/tests/data/test_config_linux (100%)
rename mne/{fiff => io}/bti/tests/data/test_config_solaris (100%)
rename mne/{fiff => io}/bti/tests/data/test_hs_linux (100%)
rename mne/{fiff => io}/bti/tests/data/test_hs_solaris (100%)
rename mne/{fiff => io}/bti/tests/data/test_pdf_linux (100%)
rename mne/{fiff => io}/bti/tests/data/test_pdf_solaris (100%)
rename mne/{fiff => io}/bti/tests/test_bti.py (73%)
rename mne/{fiff => io}/bti/transforms.py (97%)
rename mne/{fiff => io}/compensator.py (100%)
rename mne/{fiff => io}/constants.py (98%)
rename mne/{fiff => io}/ctf.py (98%)
rename mne/{fiff => io}/diff.py (94%)
rename mne/{fiff => io}/edf/__init__.py (100%)
rename mne/{fiff => io}/edf/edf.py (72%)
copy {doc/sphinxext/numpy_ext => mne/io/edf/tests}/__init__.py (100%)
rename mne/{fiff => io}/edf/tests/data/biosemi.hpts (100%)
rename mne/{fiff => io}/edf/tests/data/test.bdf (100%)
rename mne/{fiff => io}/edf/tests/data/test.edf (97%)
rename mne/{fiff => io}/edf/tests/data/test_bdf_eeglab.mat (100%)
rename mne/{fiff => io}/edf/tests/data/test_edf_eeglab.mat (100%)
rename mne/{fiff => io}/edf/tests/data/test_eeglab.mat (100%)
create mode 100644 mne/io/edf/tests/test_edf.py
create mode 100644 mne/io/egi/__init__.py
create mode 100644 mne/io/egi/egi.py
copy {doc/sphinxext/numpy_ext => mne/io/egi/tests}/__init__.py (100%)
create mode 100644 mne/io/egi/tests/data/test_egi.raw
create mode 100644 mne/io/egi/tests/test_egi.py
create mode 100644 mne/io/fiff/__init__.py
create mode 100644 mne/io/fiff/raw.py
copy {doc/sphinxext/numpy_ext => mne/io/fiff/tests}/__init__.py (100%)
rename mne/{ => io}/fiff/tests/test_raw.py (81%)
rename mne/{fiff => io}/kit/__init__.py (62%)
rename mne/{fiff => io}/kit/constants.py (100%)
rename mne/{fiff => io}/kit/coreg.py (76%)
rename mne/{fiff => io}/kit/kit.py (91%)
rename mne/{fiff => io}/kit/tests/__init__.py (100%)
rename mne/{fiff => io}/kit/tests/data/sns.txt (100%)
rename mne/{fiff => io}/kit/tests/data/test.sqd (100%)
rename mne/{fiff => io}/kit/tests/data/test_Ykgw.mat (100%)
rename mne/{fiff/kit/tests/data/test_bin.fif => io/kit/tests/data/test_bin_raw.fif} (100%)
rename mne/{fiff => io}/kit/tests/data/test_elp.txt (100%)
rename mne/{fiff => io}/kit/tests/data/test_hsp.txt (100%)
rename mne/{fiff => io}/kit/tests/data/test_mrk.sqd (100%)
rename mne/{fiff => io}/kit/tests/data/test_mrk_post.sqd (100%)
rename mne/{fiff => io}/kit/tests/data/test_mrk_pre.sqd (100%)
rename mne/{fiff => io}/kit/tests/data/trans-sample.fif (100%)
rename mne/{fiff => io}/kit/tests/test_coreg.py (90%)
rename mne/{fiff => io}/kit/tests/test_kit.py (78%)
rename mne/{fiff => io}/matrix.py (98%)
rename mne/{fiff => io}/meas_info.py (54%)
rename mne/{fiff => io}/open.py (88%)
rename mne/{fiff => io}/pick.py (96%)
rename mne/{fiff => io}/proj.py (91%)
rename mne/{fiff => io}/tag.py (94%)
rename mne/{fiff => io}/tests/__init__.py (100%)
rename mne/{fiff => io}/tests/data/fsaverage-fiducials.fif (100%)
rename mne/{fiff => io}/tests/data/process_raw.sh (100%)
rename mne/{fiff => io}/tests/data/sample-audvis-raw-trans.txt (100%)
create mode 100644 mne/io/tests/data/small-src.fif.gz
rename mne/{fiff/tests/data/test-eve-1.fif => io/tests/data/test-1-eve.fif} (100%)
rename mne/{fiff => io}/tests/data/test-ave-2.log (100%)
rename mne/{fiff => io}/tests/data/test-ave.fif (100%)
rename mne/{fiff => io}/tests/data/test-ave.fif.gz (100%)
rename mne/{fiff => io}/tests/data/test-ave.log (100%)
rename mne/{fiff => io}/tests/data/test-cov.fif (100%)
rename mne/{fiff => io}/tests/data/test-cov.fif.gz (100%)
rename mne/{fiff => io}/tests/data/test-eve-1.eve (100%)
rename mne/{fiff => io}/tests/data/test-eve-old-style.eve (100%)
rename mne/{fiff => io}/tests/data/test-eve.eve (100%)
rename mne/{fiff => io}/tests/data/test-eve.fif (100%)
rename mne/{fiff => io}/tests/data/test-eve.fif.gz (100%)
rename mne/{fiff => io}/tests/data/test-km-cov.fif (100%)
rename mne/{fiff => io}/tests/data/test-lh.label (100%)
rename mne/{fiff => io}/tests/data/test-mpr-eve.eve (100%)
rename mne/{fiff => io}/tests/data/test-nf-ave.fif (100%)
rename mne/{fiff => io}/tests/data/test-no-reject.ave (100%)
rename mne/{fiff/tests/data/test_proj.fif => io/tests/data/test-proj.fif} (100%)
rename mne/{fiff/tests/data/test_proj.fif.gz => io/tests/data/test-proj.fif.gz} (100%)
rename mne/{fiff => io}/tests/data/test-rh.label (100%)
rename mne/{fiff => io}/tests/data/test.ave (100%)
rename mne/{fiff => io}/tests/data/test.cov (100%)
rename mne/{fiff => io}/tests/data/test_bads.txt (100%)
rename mne/{fiff => io}/tests/data/test_chpi_raw_hp.txt (100%)
rename mne/{fiff => io}/tests/data/test_chpi_raw_sss.fif (100%)
rename mne/{fiff => io}/tests/data/test_ctf_comp_raw.fif (100%)
rename mne/{fiff => io}/tests/data/test_ctf_raw.fif (100%)
rename mne/{fiff => io}/tests/data/test_empty_room.cov (100%)
rename mne/{fiff => io}/tests/data/test_erm-cov.fif (100%)
rename mne/{fiff => io}/tests/data/test_ica.lout (100%)
rename mne/{fiff => io}/tests/data/test_keepmean.cov (100%)
rename mne/{fiff => io}/tests/data/test_raw-eve.fif (100%)
rename mne/{fiff => io}/tests/data/test_raw.fif (100%)
rename mne/{fiff => io}/tests/data/test_raw.fif.gz (100%)
rename mne/{fiff => io}/tests/data/test_raw.lout (100%)
rename mne/{fiff => io}/tests/data/test_withbads_raw.fif (100%)
rename mne/{fiff => io}/tests/data/test_wrong_bads.txt (100%)
rename mne/{fiff => io}/tests/test_compensator.py (88%)
rename mne/{fiff => io}/tests/test_meas_info.py (76%)
rename mne/{fiff => io}/tests/test_pick.py (89%)
rename mne/{fiff => io}/tree.py (97%)
rename mne/{fiff => io}/write.py (90%)
create mode 100644 mne/layouts/EEG1005.lay
create mode 100644 mne/layouts/EGI256.lout
create mode 100644 mne/layouts/KIT-157.lout
create mode 100644 mne/minimum_norm/psf_ctf.py
create mode 100644 mne/minimum_norm/tests/test_psf_ctf.py
create mode 100644 mne/preprocessing/bads.py
create mode 100644 mne/preprocessing/ctps_.py
create mode 100644 mne/preprocessing/infomax_.py
create mode 100644 mne/preprocessing/tests/test_ctps.py
create mode 100644 mne/preprocessing/tests/test_infomax.py
create mode 100644 mne/realtime/fieldtrip_client.py
create mode 100644 mne/realtime/tests/test_fieldtrip_client.py
create mode 100644 mne/report.py
create mode 100644 mne/stats/regression.py
create mode 100644 mne/stats/tests/test_regression.py
create mode 100644 mne/tests/test_channels.py
create mode 100644 mne/tests/test_evoked.py
create mode 100644 mne/tests/test_hdf5.py
create mode 100644 mne/tests/test_report.py
delete mode 100644 mne/tests/test_viz.py
delete mode 100644 mne/viz.py
create mode 100644 mne/viz/_3d.py
create mode 100644 mne/viz/__init__.py
create mode 100644 mne/viz/circle.py
create mode 100644 mne/viz/epochs.py
create mode 100644 mne/viz/evoked.py
create mode 100644 mne/viz/ica.py
create mode 100644 mne/viz/misc.py
create mode 100644 mne/viz/raw.py
copy {doc/sphinxext/numpy_ext => mne/viz/tests}/__init__.py (100%)
copy doc/sphinxext/numpy_ext/__init__.py => mne/viz/tests/__init__py (100%)
create mode 100644 mne/viz/tests/test_3d.py
create mode 100644 mne/viz/tests/test_circle.py
create mode 100644 mne/viz/tests/test_epochs.py
create mode 100644 mne/viz/tests/test_evoked.py
create mode 100644 mne/viz/tests/test_ica.py
create mode 100644 mne/viz/tests/test_misc.py
create mode 100644 mne/viz/tests/test_raw.py
create mode 100644 mne/viz/tests/test_topo.py
create mode 100644 mne/viz/tests/test_topomap.py
create mode 100644 mne/viz/tests/test_utils.py
create mode 100644 mne/viz/topo.py
create mode 100644 mne/viz/topomap.py
create mode 100644 mne/viz/utils.py
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