[med-svn] r17627 - in trunk/packages: . ngsqctoolkit ngsqctoolkit/trunk ngsqctoolkit/trunk/debian ngsqctoolkit/trunk/debian/source ngsqctoolkit/trunk/debian/upstream
Andreas Tille
tille at moszumanska.debian.org
Thu Aug 7 10:58:22 UTC 2014
Author: tille
Date: 2014-08-07 10:58:22 +0000 (Thu, 07 Aug 2014)
New Revision: 17627
Added:
trunk/packages/ngsqctoolkit/
trunk/packages/ngsqctoolkit/trunk/
trunk/packages/ngsqctoolkit/trunk/debian/
trunk/packages/ngsqctoolkit/trunk/debian/changelog
trunk/packages/ngsqctoolkit/trunk/debian/compat
trunk/packages/ngsqctoolkit/trunk/debian/control
trunk/packages/ngsqctoolkit/trunk/debian/copyright
trunk/packages/ngsqctoolkit/trunk/debian/rules
trunk/packages/ngsqctoolkit/trunk/debian/source/
trunk/packages/ngsqctoolkit/trunk/debian/source/format
trunk/packages/ngsqctoolkit/trunk/debian/upstream/
trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata
trunk/packages/ngsqctoolkit/trunk/debian/watch
Log:
Inject some rough packaging stuff for ngsqctoolkit (does not yet build a package - license needs to be clarified first)
Added: trunk/packages/ngsqctoolkit/trunk/debian/changelog
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/changelog (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/changelog 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,5 @@
+ngsqctoolkit (2.3.3-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #<bug>)
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org> Thu, 24 May 2012 14:30:13 +0200
Added: trunk/packages/ngsqctoolkit/trunk/debian/compat
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/compat (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/compat 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1 @@
+9
Added: trunk/packages/ngsqctoolkit/trunk/debian/control
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/control (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/control 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,22 @@
+Source: ngsqctoolkit
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ngsqctoolkit/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ngsqctoolkit/trunk/
+Homepage: http://59.163.192.90:8080/ngsqctoolkit/
+
+Package: ngsqctoolkit
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: toolkit for the quality control of next generation sequencing data
+ NGS QC Toolkit: A toolkit for the quality control (QC) of next
+ generation sequencing (NGS) data. The toolkit comprises of user-friendly
+ stand alone tools for quality control of the sequence data generated
+ using Illumina and Roche 454 platforms with detailed results in the form
+ of tables and graphs, and filtering of high-quality sequence data. It
+ also includes few other tools, which are helpful in NGS data quality
+ control and analysis.
Added: trunk/packages/ngsqctoolkit/trunk/debian/copyright
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/copyright (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/copyright 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,12 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: NGS QC Toolkit
+Upstream-Contact: Mukesh Jain <mjain at nipgr.ac.in> (mjainanid at gmail.com)
+Source: http://59.163.192.90:8080/ngsqctoolkit/
+
+Files: *
+Copyright: © 2010-2014 Mukesh Jain
+License: to_be_clarified
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>
Added: trunk/packages/ngsqctoolkit/trunk/debian/rules
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/rules (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/rules 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+# include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there. Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+ dh $@
+
+#get-orig-source:
+# . debian/get-orig-source
Property changes on: trunk/packages/ngsqctoolkit/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/ngsqctoolkit/trunk/debian/source/format
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/source/format (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/source/format 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/upstream/metadata 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,12 @@
+Reference:
+ Author: Ravi K. Patel and Mukesh Jain
+ Title: "NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data"
+ Journal: PLoS One
+ Year: 2012
+ Volume: 7
+ Number: 2
+ Pages: e30619
+ DOI: 10.1371/journal.pone.0030619
+ PMID: 22312429
+ URL: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030619
+ eprint: http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0030619&representation=PDF
Added: trunk/packages/ngsqctoolkit/trunk/debian/watch
===================================================================
--- trunk/packages/ngsqctoolkit/trunk/debian/watch (rev 0)
+++ trunk/packages/ngsqctoolkit/trunk/debian/watch 2014-08-07 10:58:22 UTC (rev 17627)
@@ -0,0 +1,3 @@
+version=3
+
+http://59.163.192.90:8080/ngsqctoolkit/ .*download.pl\?toolkit=NGSQCToolkit_v([\d.]+)\.zip
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