[med-svn] [gmap] branch master updated (29dae58 -> fe772e8)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository gmap.

      from  29dae58   upload to unstable
       new  4645328   Imported Upstream version 2014-07-28
       new  b545806   Merge tag 'upstream/2014-07-28'
       new  658a2b2   d/changelog: new upstream release
       new  fe772e8   push to unstable d/*.1: updated man pages

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog                   |   85 ++++
 VERSION                     |    2 +-
 configure                   |   24 +-
 debian/changelog            |    6 +
 debian/gmap.1               |    8 +-
 debian/gmap_build.1         |    4 +-
 debian/gsnap.1              |    2 +-
 src/atoiindex.c             |   18 +-
 src/cmetindex.c             |   18 +-
 src/dynprog.h               |   10 +-
 src/dynprog_genome.c        |  246 +++++-----
 src/dynprog_simd.c          |  271 +++++++++--
 src/gmap.c                  |    5 +-
 src/pair.c                  |   46 +-
 src/pair.h                  |    7 +-
 src/pairpool.c              |    8 +-
 src/stage1hr.c              |   10 +-
 src/stage2.c                |   69 ++-
 src/stage3.c                |  529 ++++++++++++++-------
 src/stage3.h                |    3 +-
 src/stage3hr.c              | 1099 ++++++++++++-------------------------------
 src/stage3hr.h              |   10 +-
 util/gff3_genes.pl.in       |   47 +-
 util/gff3_introns.pl.in     |   30 +-
 util/gff3_splicesites.pl.in |   34 +-
 25 files changed, 1383 insertions(+), 1208 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git