[med-svn] [gmap] 04/04: push to unstable d/*.1: updated man pages
Alex Mestiashvili
malex-guest at moszumanska.debian.org
Thu Aug 7 13:49:54 UTC 2014
This is an automated email from the git hooks/post-receive script.
malex-guest pushed a commit to branch master
in repository gmap.
commit fe772e81ee61a74ff6f418d352762346025743bb
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date: Thu Aug 7 15:25:11 2014 +0200
push to unstable
d/*.1: updated man pages
---
debian/changelog | 2 +-
debian/gmap.1 | 8 ++++----
debian/gmap_build.1 | 4 ++--
debian/gsnap.1 | 2 +-
4 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/debian/changelog b/debian/changelog
index f611144..30794c4 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-gmap (2014-07-28-1) UNRELEASED; urgency=medium
+gmap (2014-07-28-1) unstable; urgency=medium
* Imported Upstream version 2014-07-28
diff --git a/debian/gmap.1 b/debian/gmap.1
index a750eac..5c8d36d 100644
--- a/debian/gmap.1
+++ b/debian/gmap.1
@@ -1,4 +1,4 @@
-.TH GMAP "1" "July 2014" "GMAP 2014-07-04" "User Commands"
+.TH GMAP "1" "July 2014" "GMAP 2014-07-28" "User Commands"
.SH NAME
gmap \- Genomic Mapping and Alignment Program
.SH SYNOPSIS
@@ -69,11 +69,11 @@ Batch mode (default = 2)
4 see note allocate allocate
5 expand allocate allocate
-Note: For a single sequence, all data structures use mmap
+Note: For a single sequence, all data structures use mmap.
If mmap not available and allocate not chosen, then will use fileio (very slow)
.TP
-Note about \fB\-\-batch\fR and offsets: Expansion of offsets can be controlled
-independently by the \fB\-\-expand\-offsets\fR flag. The \fB\-\-batch\fR=\fI\,5\/\fR option is equivalent
+Note about \fB\-\-batch\fR and offsets: Expansion of offsets can be controlled independently by the \fB\-\-expand\-offsets\fR flag.
+The \fB\-\-batch\fR=\fI\,5\/\fR option is equivalent
to \fB\-\-batch\fR=\fI\,4\/\fR plus \fB\-\-expand\-offsets\fR=\fI\,1\/\fR
.TP
\fB\-\-expand\-offsets\fR=\fI\,INT\/\fR
diff --git a/debian/gmap_build.1 b/debian/gmap_build.1
index 59326f2..a5d3799 100644
--- a/debian/gmap_build.1
+++ b/debian/gmap_build.1
@@ -1,4 +1,4 @@
-.TH GMAP_BUILD "1" "July 2014" "GMAP 2014-07-04" "User Commands"
+.TH GMAP_BUILD "1" "July 2014" "GMAP 2014-07-28" "User Commands"
.SH NAME
gmap_build \- create a genome database for GMAP or GSNAP
.SH SYNOPSIS
@@ -8,7 +8,7 @@ gmap_build \- create a genome database for GMAP or GSNAP
.PP
gmap_build:
Builds a gmap database for a genome to be used by GMAP or GSNAP.
- Part of GMAP package, version 2014\-07\-04.
+ Part of GMAP package, version 2014\-07\-28.
Starting from version 2013-10-28, gmap_setup program is removed, now supporting only gmap_build.
Moved options from gmap_setup to gmap_build.
.SH OPTIONS
diff --git a/debian/gsnap.1 b/debian/gsnap.1
index 17fd765..115713c 100644
--- a/debian/gsnap.1
+++ b/debian/gsnap.1
@@ -1,4 +1,4 @@
-.TH GSNAP "1" "July 2014" "GMAP 2014-07-04" "User Commands"
+.TH GSNAP "1" "July 2014" "GMAP 2014-07-28" "User Commands"
.SH NAME
gsnap \- Genomic Short-read Nucleotide Alignment Program
.SH SYNOPSIS
--
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