[med-svn] r17747 - in trunk/packages/t-coffee/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2014-08-15 22:21:08 +0000 (Fri, 15 Aug 2014)
New Revision: 17747

Modified:
   trunk/packages/t-coffee/trunk/debian/changelog
   trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch
Log:
Prepare new upstream version


Modified: trunk/packages/t-coffee/trunk/debian/changelog
===================================================================
--- trunk/packages/t-coffee/trunk/debian/changelog	2014-08-15 16:40:09 UTC (rev 17746)
+++ trunk/packages/t-coffee/trunk/debian/changelog	2014-08-15 22:21:08 UTC (rev 17747)
@@ -1,9 +1,10 @@
-t-coffee (10.00.r1613-1) UNRELEASED; urgency=low
+t-coffee (11.00.8cbe486-1) UNRELEASED; urgency=low
 
   [ Charles Plessy ]
   * Suggest ncbi-blast+. 
 
   [ Andreas Tille ]
+  * New upstream version
   * debian/patches/ncbi-blast++_has_dropped_pl_extension.patch:
     since ncbi-blast++ has renamed some perl scripts according to
     Debian policy t-coffee needs to be adapted:
@@ -11,7 +12,7 @@
       s/blastpgp\.pl/blastpgp/
     Closes: #730722
 
- -- Andreas Tille <tille at debian.org>  Fri, 29 Nov 2013 10:27:47 +0100
+ -- Andreas Tille <tille at debian.org>  Sat, 16 Aug 2014 00:20:06 +0200
 
 t-coffee (10.00.r1613-1) unstable; urgency=low
 

Modified: trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch
===================================================================
--- trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch	2014-08-15 16:40:09 UTC (rev 17746)
+++ trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch	2014-08-15 22:21:08 UTC (rev 17747)
@@ -1,14 +1,16 @@
 Description: Debian-specific adjustment.
  The program "probconsRNA" is called "probcons-RNA" in Debian.
 Forwarded: not-needed
---- a/t_coffee_source/define_header.h
-+++ b/t_coffee_source/define_header.h
-@@ -592,7 +592,7 @@
- #define DALILITEc_source "empty"
- #define DALILITEc_update_action "never"
- #define DALILITEc_mode "expresso,3dcoffee"
+Last-Update: Sat, 16 Aug 2014 00:19:42 +0200
+
+--- T-COFFEE_distribution_Version_11.00.8cbe486.orig/t_coffee_source/data_headers/programmes_define.h
++++ T-COFFEE_distribution_Version_11.00.8cbe486/t_coffee_source/data_headers/programmes_define.h
+@@ -68,7 +68,7 @@
+ #define POA_FILE1 "blosum80.mat"
+ 
+ #define PROBCONS_4_TCOFFEE "probcons"
 -#define PROBCONSRNA_4_TCOFFEE "probconsRNA"
 +#define PROBCONSRNA_4_TCOFFEE "probcons-RNA"
- #define PROBCONSRNA_type "RNA_multiple_aligner"
- #define PROBCONSRNA_ADDRESS "http://probcons.stanford.edu/"
- #define PROBCONSRNA_language "C++"
+ #define PROBCONS_ADDRESS  "http://probcons.stanford.edu/"
+ 
+