[med-svn] [htslib] 02/06: Remove Debian revision from symbols version.

Sat Aug 16 12:52:06 UTC 2014

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch debian/unstable
in repository htslib.

commit b3a60f270071601ddc54f9ec8ab0872c684f7b65
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Aug 16 18:47:46 2014 +0900

    Remove Debian revision from symbols version.
---
 debian/libhts1.symbols | 1056 ++++++++++++++++++++++++------------------------
 1 file changed, 528 insertions(+), 528 deletions(-)

diff --git a/debian/libhts1.symbols b/debian/libhts1.symbols
index 10f3518..3651616 100644
--- a/debian/libhts1.symbols
+++ b/debian/libhts1.symbols
@@ -1,529 +1,529 @@
 libhts.so.1 libhts1 #MINVER#
- MD5_Final at Base 1.0-1
- MD5_Init at Base 1.0-1
- MD5_Update at Base 1.0-1
- _reader_next_line at Base 1.0-1
- _vcf_parse_format at Base 1.0-1
- bam_aux2A at Base 1.0-1
- bam_aux2Z at Base 1.0-1
- bam_aux2f at Base 1.0-1
- bam_aux2i at Base 1.0-1
- bam_aux_append at Base 1.0-1
- bam_aux_del at Base 1.0-1
- bam_aux_get at Base 1.0-1
- bam_cigar2qlen at Base 1.0-1
- bam_cigar2rlen at Base 1.0-1
- bam_construct_seq at Base 1.0-1
- bam_copy1 at Base 1.0-1
- bam_destroy1 at Base 1.0-1
- bam_dup1 at Base 1.0-1
- bam_endpos at Base 1.0-1
- bam_flag2str at Base 1.0-1
- bam_hdr_destroy at Base 1.0-1
- bam_hdr_dup at Base 1.0-1
- bam_hdr_init at Base 1.0-1
- bam_hdr_read at Base 1.0-1
- bam_hdr_write at Base 1.0-1
- bam_header_to_cram at Base 1.0-1
- bam_index_build at Base 1.0-1
- bam_init1 at Base 1.0-1
- bam_mplp_auto at Base 1.0-1
- bam_mplp_destroy at Base 1.0-1
- bam_mplp_init at Base 1.0-1
- bam_mplp_init_overlaps at Base 1.0-1
- bam_mplp_set_maxcnt at Base 1.0-1
- bam_name2id at Base 1.0-1
- bam_plp_auto at Base 1.0-1
- bam_plp_destroy at Base 1.0-1
- bam_plp_init at Base 1.0-1
- bam_plp_init_overlaps at Base 1.0-1
- bam_plp_next at Base 1.0-1
- bam_plp_push at Base 1.0-1
- bam_plp_reset at Base 1.0-1
- bam_plp_set_maxcnt at Base 1.0-1
- bam_read1 at Base 1.0-1
- bam_str2flag at Base 1.0-1
- bam_write1 at Base 1.0-1
- bcf_add_filter at Base 1.0-1
- bcf_calc_ac at Base 1.0-1
- bcf_clear at Base 1.0-1
- bcf_destroy at Base 1.0-1
- bcf_dup at Base 1.0-1
- bcf_empty1 at Base 1.0-1
- bcf_enc_vchar at Base 1.0-1
- bcf_enc_vfloat at Base 1.0-1
- bcf_enc_vint at Base 1.0-1
- bcf_float_missing at Base 1.0-1
- bcf_float_vector_end at Base 1.0-1
- bcf_fmt_array at Base 1.0-1
- bcf_fmt_sized_array at Base 1.0-1
- bcf_get_fmt at Base 1.0-1
- bcf_get_format_string at Base 1.0-1
- bcf_get_format_values at Base 1.0-1
- bcf_get_info at Base 1.0-1
- bcf_get_info_values at Base 1.0-1
- bcf_get_variant_type at Base 1.0-1
- bcf_get_variant_types at Base 1.0-1
- bcf_gt_type at Base 1.0-1
- bcf_has_filter at Base 1.0-1
- bcf_hdr_add_hrec at Base 1.0-1
- bcf_hdr_add_sample at Base 1.0-1
- bcf_hdr_append at Base 1.0-1
- bcf_hdr_check_sanity at Base 1.0-1
- bcf_hdr_combine at Base 1.0-1
- bcf_hdr_destroy at Base 1.0-1
- bcf_hdr_dup at Base 1.0-1
- bcf_hdr_fmt_text at Base 1.0-1
- bcf_hdr_get_hrec at Base 1.0-1
- bcf_hdr_get_version at Base 1.0-1
- bcf_hdr_id2int at Base 1.0-1
- bcf_hdr_init at Base 1.0-1
- bcf_hdr_parse at Base 1.0-1
- bcf_hdr_parse_line at Base 1.0-1
- bcf_hdr_parse_sample_line at Base 1.0-1
- bcf_hdr_printf at Base 1.0-1
- bcf_hdr_read at Base 1.0-1
- bcf_hdr_register_hrec at Base 1.0-1
- bcf_hdr_remove at Base 1.0-1
- bcf_hdr_seqnames at Base 1.0-1
- bcf_hdr_set at Base 1.0-1
- bcf_hdr_set_samples at Base 1.0-1
- bcf_hdr_set_version at Base 1.0-1
- bcf_hdr_subset at Base 1.0-1
- bcf_hdr_sync at Base 1.0-1
- bcf_hdr_write at Base 1.0-1
- bcf_header_debug at Base 1.0-1
- bcf_hrec_add_key at Base 1.0-1
- bcf_hrec_debug at Base 1.0-1
- bcf_hrec_destroy at Base 1.0-1
- bcf_hrec_dup at Base 1.0-1
- bcf_hrec_find_key at Base 1.0-1
- bcf_hrec_format at Base 1.0-1
- bcf_hrec_set_val at Base 1.0-1
- bcf_index at Base 1.0-1
- bcf_index_build at Base 1.0-1
- bcf_init at Base 1.0-1
- bcf_is_snp at Base 1.0-1
- bcf_read at Base 1.0-1
- bcf_readrec at Base 1.0-1
- bcf_remove_alleles at Base 1.0-1
- bcf_remove_filter at Base 1.0-1
- bcf_sr_add_reader at Base 1.0-1
- bcf_sr_destroy at Base 1.0-1
- bcf_sr_init at Base 1.0-1
- bcf_sr_next_line at Base 1.0-1
- bcf_sr_regions_destroy at Base 1.0-1
- bcf_sr_regions_flush at Base 1.0-1
- bcf_sr_regions_init at Base 1.0-1
- bcf_sr_regions_next at Base 1.0-1
- bcf_sr_regions_overlap at Base 1.0-1
- bcf_sr_regions_seek at Base 1.0-1
- bcf_sr_remove_reader at Base 1.0-1
- bcf_sr_seek at Base 1.0-1
- bcf_sr_set_regions at Base 1.0-1
- bcf_sr_set_samples at Base 1.0-1
- bcf_sr_set_targets at Base 1.0-1
- bcf_subset at Base 1.0-1
- bcf_subset_format at Base 1.0-1
- bcf_sweep_bwd at Base 1.0-1
- bcf_sweep_destroy at Base 1.0-1
- bcf_sweep_fwd at Base 1.0-1
- bcf_sweep_hdr at Base 1.0-1
- bcf_sweep_init at Base 1.0-1
- bcf_translate at Base 1.0-1
- bcf_trim_alleles at Base 1.0-1
- bcf_type_shift at Base 1.0-1
- bcf_unpack at Base 1.0-1
- bcf_update_alleles at Base 1.0-1
- bcf_update_alleles_str at Base 1.0-1
- bcf_update_filter at Base 1.0-1
- bcf_update_format at Base 1.0-1
- bcf_update_format_string at Base 1.0-1
- bcf_update_id at Base 1.0-1
- bcf_update_info at Base 1.0-1
- bcf_write at Base 1.0-1
- bgzf_check_EOF at Base 1.0-1
- bgzf_close at Base 1.0-1
- bgzf_dopen at Base 1.0-1
- bgzf_flush at Base 1.0-1
- bgzf_flush_try at Base 1.0-1
- bgzf_getc at Base 1.0-1
- bgzf_getline at Base 1.0-1
- bgzf_hopen at Base 1.0-1
- bgzf_index_add_block at Base 1.0-1
- bgzf_index_build_init at Base 1.0-1
- bgzf_index_destroy at Base 1.0-1
- bgzf_index_dump at Base 1.0-1
- bgzf_index_load at Base 1.0-1
- bgzf_is_bgzf at Base 1.0-1
- bgzf_mt at Base 1.0-1
- bgzf_open at Base 1.0-1
- bgzf_raw_read at Base 1.0-1
- bgzf_raw_write at Base 1.0-1
- bgzf_read at Base 1.0-1
- bgzf_read_block at Base 1.0-1
- bgzf_seek at Base 1.0-1
- bgzf_set_cache_size at Base 1.0-1
- bgzf_useek at Base 1.0-1
- bgzf_utell at Base 1.0-1
- bgzf_write at Base 1.0-1
- cram_beta_decode_char at Base 1.0-1
- cram_beta_decode_free at Base 1.0-1
- cram_beta_decode_init at Base 1.0-1
- cram_beta_decode_int at Base 1.0-1
- cram_beta_encode_char at Base 1.0-1
- cram_beta_encode_free at Base 1.0-1
- cram_beta_encode_init at Base 1.0-1
- cram_beta_encode_int at Base 1.0-1
- cram_beta_encode_store at Base 1.0-1
- cram_block_method2str at Base 1.0-1
- cram_byte_array_len_decode at Base 1.0-1
- cram_byte_array_len_decode_free at Base 1.0-1
- cram_byte_array_len_decode_init at Base 1.0-1
- cram_byte_array_len_encode at Base 1.0-1
- cram_byte_array_len_encode_free at Base 1.0-1
- cram_byte_array_len_encode_init at Base 1.0-1
- cram_byte_array_len_encode_store at Base 1.0-1
- cram_byte_array_stop_decode_block at Base 1.0-1
- cram_byte_array_stop_decode_char at Base 1.0-1
- cram_byte_array_stop_decode_free at Base 1.0-1
- cram_byte_array_stop_decode_init at Base 1.0-1
- cram_byte_array_stop_encode at Base 1.0-1
- cram_byte_array_stop_encode_free at Base 1.0-1
- cram_byte_array_stop_encode_init at Base 1.0-1
- cram_byte_array_stop_encode_store at Base 1.0-1
- cram_close at Base 1.0-1
- cram_compress_block at Base 1.0-1
- cram_content_type2str at Base 1.0-1
- cram_decode_TD at Base 1.0-1
- cram_decode_compression_header at Base 1.0-1
- cram_decode_slice at Base 1.0-1
- cram_decode_slice_header at Base 1.0-1
- cram_decode_slice_mt at Base 1.0-1
- cram_decode_slice_thread at Base 1.0-1
- cram_decoder_init at Base 1.0-1
- cram_dopen at Base 1.0-1
- cram_encode_compression_header at Base 1.0-1
- cram_encode_container at Base 1.0-1
- cram_encode_slice_header at Base 1.0-1
- cram_encoder_init at Base 1.0-1
- cram_encoding2str at Base 1.0-1
- cram_eof at Base 1.0-1
- cram_external_decode_block at Base 1.0-1
- cram_external_decode_char at Base 1.0-1
- cram_external_decode_free at Base 1.0-1
- cram_external_decode_init at Base 1.0-1
- cram_external_decode_int at Base 1.0-1
- cram_external_encode at Base 1.0-1
- cram_external_encode_free at Base 1.0-1
- cram_external_encode_init at Base 1.0-1
- cram_external_encode_store at Base 1.0-1
- cram_flush at Base 1.0-1
- cram_flush_container at Base 1.0-1
- cram_flush_container_mt at Base 1.0-1
- cram_flush_thread at Base 1.0-1
- cram_free_block at Base 1.0-1
- cram_free_compression_header at Base 1.0-1
- cram_free_container at Base 1.0-1
- cram_free_file_def at Base 1.0-1
- cram_free_slice at Base 1.0-1
- cram_free_slice_header at Base 1.0-1
- cram_gamma_decode at Base 1.0-1
- cram_gamma_decode_free at Base 1.0-1
- cram_gamma_decode_init at Base 1.0-1
- cram_get_bam_seq at Base 1.0-1
- cram_get_ref at Base 1.0-1
- cram_get_seq at Base 1.0-1
- cram_header_to_bam at Base 1.0-1
- cram_huffman_decode_char0 at Base 1.0-1
- cram_huffman_decode_char at Base 1.0-1
- cram_huffman_decode_free at Base 1.0-1
- cram_huffman_decode_init at Base 1.0-1
- cram_huffman_decode_int0 at Base 1.0-1
- cram_huffman_decode_int at Base 1.0-1
- cram_huffman_encode_char0 at Base 1.0-1
- cram_huffman_encode_char at Base 1.0-1
- cram_huffman_encode_free at Base 1.0-1
- cram_huffman_encode_init at Base 1.0-1
- cram_huffman_encode_int0 at Base 1.0-1
- cram_huffman_encode_int at Base 1.0-1
- cram_huffman_encode_store at Base 1.0-1
- cram_index_build at Base 1.0-1
- cram_index_free at Base 1.0-1
- cram_index_load at Base 1.0-1
- cram_index_query at Base 1.0-1
- cram_load_reference at Base 1.0-1
- cram_new_block at Base 1.0-1
- cram_new_compression_header at Base 1.0-1
- cram_new_container at Base 1.0-1
- cram_new_metrics at Base 1.0-1
- cram_new_slice at Base 1.0-1
- cram_open at Base 1.0-1
- cram_put_bam_seq at Base 1.0-1
- cram_read_SAM_hdr at Base 1.0-1
- cram_read_block at Base 1.0-1
- cram_read_container at Base 1.0-1
- cram_read_file_def at Base 1.0-1
- cram_read_slice at Base 1.0-1
- cram_ref_decr at Base 1.0-1
- cram_ref_incr at Base 1.0-1
- cram_ref_load at Base 1.0-1
- cram_seek at Base 1.0-1
- cram_seek_to_refpos at Base 1.0-1
- cram_set_header at Base 1.0-1
- cram_set_option at Base 1.0-1
- cram_set_voption at Base 1.0-1
- cram_stats_add at Base 1.0-1
- cram_stats_create at Base 1.0-1
- cram_stats_del at Base 1.0-1
- cram_stats_dump at Base 1.0-1
- cram_stats_encoding at Base 1.0-1
- cram_stats_free at Base 1.0-1
- cram_subexp_decode at Base 1.0-1
- cram_subexp_decode_free at Base 1.0-1
- cram_subexp_decode_init at Base 1.0-1
- cram_uncompress_block at Base 1.0-1
- cram_write_SAM_hdr at Base 1.0-1
- cram_write_block at Base 1.0-1
- cram_write_container at Base 1.0-1
- cram_write_file_def at Base 1.0-1
- debug_buffer at Base 1.0-1
- debug_buffers at Base 1.0-1
- download_and_open at Base 1.0-1
- expand_cache_path at Base 1.0-1
- fai_build at Base 1.0-1
- fai_build_core at Base 1.0-1
- fai_destroy at Base 1.0-1
- fai_fetch at Base 1.0-1
- fai_load at Base 1.0-1
- fai_read at Base 1.0-1
- fai_save at Base 1.0-1
- faidx_fetch_nseq at Base 1.0-1
- faidx_fetch_seq at Base 1.0-1
- faidx_has_seq at Base 1.0-1
- file_exists at Base 1.0-1
- file_size at Base 1.0-1
- find_file_url at Base 1.0-1
- flen at Base 1.0-1
- hclose at Base 1.0-1
- hclose_abruptly at Base 1.0-1
- hdopen at Base 1.0-1
- hfile_destroy at Base 1.0-1
- hfile_init at Base 1.0-1
- hfile_oflags at Base 1.0-1
- hflush at Base 1.0-1
- hgetc2 at Base 1.0-1
- hopen at Base 1.0-1
- hopen_net at Base 1.0-1
- hpeek at Base 1.0-1
- hputc2 at Base 1.0-1
- hputs2 at Base 1.0-1
- hread2 at Base 1.0-1
- hrec_add_idx at Base 1.0-1
- hseek at Base 1.0-1
- hts_close at Base 1.0-1
- hts_file_type at Base 1.0-1
- hts_get_bgzfp at Base 1.0-1
- hts_getline at Base 1.0-1
- hts_idx_destroy at Base 1.0-1
- hts_idx_finish at Base 1.0-1
- hts_idx_get_meta at Base 1.0-1
- hts_idx_get_n_no_coor at Base 1.0-1
- hts_idx_get_stat at Base 1.0-1
- hts_idx_getfn at Base 1.0-1
- hts_idx_init at Base 1.0-1
- hts_idx_load at Base 1.0-1
- hts_idx_load_local at Base 1.0-1
- hts_idx_push at Base 1.0-1
- hts_idx_save at Base 1.0-1
- hts_idx_seqnames at Base 1.0-1
- hts_idx_set_meta at Base 1.0-1
- hts_itr_destroy at Base 1.0-1
- hts_itr_next at Base 1.0-1
- hts_itr_query at Base 1.0-1
- hts_itr_querys at Base 1.0-1
- hts_open at Base 1.0-1
- hts_parse_reg at Base 1.0-1
- hts_readlines at Base 1.0-1
- hts_readlist at Base 1.0-1
- hts_set_fai_filename at Base 1.0-1
- hts_set_threads at Base 1.0-1
- hts_useek at Base 1.0-1
- hts_utell at Base 1.0-1
- hts_verbose at Base 1.0-1
- hts_version at Base 1.0-1
- hwrite2 at Base 1.0-1
- int32_decode at Base 1.0-1
- int32_encode at Base 1.0-1
- int32_get at Base 1.0-1
- int32_put at Base 1.0-1
- is_directory at Base 1.0-1
- is_file at Base 1.0-1
- itf8_decode at Base 1.0-1
- itf8_encode at Base 1.0-1
- itf8_put_blk at Base 1.0-1
- kf_betai at Base 1.0-1
- kf_erfc at Base 1.0-1
- kf_gammap at Base 1.0-1
- kf_gammaq at Base 1.0-1
- kf_lgamma at Base 1.0-1
- kftp_connect at Base 1.0-1
- kftp_connect_file at Base 1.0-1
- kftp_parse_url at Base 1.0-1
- kftp_reconnect at Base 1.0-1
- kh_clear_s2i at Base 1.0-1
- kh_del_s2i at Base 1.0-1
- kh_destroy_s2i at Base 1.0-1
- kh_get_s2i at Base 1.0-1
- kh_init_s2i at Base 1.0-1
- kh_put_s2i at Base 1.0-1
- kh_resize_s2i at Base 1.0-1
- khttp_connect_file at Base 1.0-1
- khttp_parse_url at Base 1.0-1
- kmemmem at Base 1.0-1
- knet_close at Base 1.0-1
- knet_dopen at Base 1.0-1
- knet_open at Base 1.0-1
- knet_read at Base 1.0-1
- knet_seek at Base 1.0-1
- ks_combsort__off at Base 1.0-1
- ks_destroy at Base 1.0-1
- ks_getuntil2 at Base 1.0-1
- ks_heapadjust__off at Base 1.0-1
- ks_heapmake__off at Base 1.0-1
- ks_heapsort__off at Base 1.0-1
- ks_init at Base 1.0-1
- ks_introsort__off at Base 1.0-1
- ks_ksmall__off at Base 1.0-1
- ks_mergesort__off at Base 1.0-1
- ks_shuffle__off at Base 1.0-1
- ksplit_core at Base 1.0-1
- ksprintf at Base 1.0-1
- kstrnstr at Base 1.0-1
- kstrstr at Base 1.0-1
- kstrtok at Base 1.0-1
- kt_fisher_exact at Base 1.0-1
- kvsprintf at Base 1.0-1
- ltf8_decode at Base 1.0-1
- ltf8_get at Base 1.0-1
- ltf8_put at Base 1.0-1
- mfascii at Base 1.0-1
- mfclose at Base 1.0-1
- mfcreate at Base 1.0-1
- mfcreate_from at Base 1.0-1
- mfdestroy at Base 1.0-1
- mfdetach at Base 1.0-1
- mfeof at Base 1.0-1
- mfflush at Base 1.0-1
- mfgetc at Base 1.0-1
- mfgets at Base 1.0-1
- mfopen at Base 1.0-1
- mfprintf at Base 1.0-1
- mfread at Base 1.0-1
- mfrecreate at Base 1.0-1
- mfreopen at Base 1.0-1
- mfseek at Base 1.0-1
- mfsteal at Base 1.0-1
- mftell at Base 1.0-1
- mftruncate at Base 1.0-1
- mfwrite at Base 1.0-1
- mkdir_prefix at Base 1.0-1
- mrewind at Base 1.0-1
- mstderr at Base 1.0-1
- mstdin at Base 1.0-1
- mstdout at Base 1.0-1
- mungetc at Base 1.0-1
- open_path_mfile at Base 1.0-1
- paranoid_fclose at Base 1.0-1
- pool_alloc at Base 1.0-1
- pool_create at Base 1.0-1
- pool_destroy at Base 1.0-1
- pool_free at Base 1.0-1
- refs2id at Base 1.0-1
- refs_free at Base 1.0-1
- sam_format1 at Base 1.0-1
- sam_hdr_PG_ID at Base 1.0-1
- sam_hdr_add at Base 1.0-1
- sam_hdr_add_PG at Base 1.0-1
- sam_hdr_add_lines at Base 1.0-1
- sam_hdr_decr_ref at Base 1.0-1
- sam_hdr_dump at Base 1.0-1
- sam_hdr_dup at Base 1.0-1
- sam_hdr_find at Base 1.0-1
- sam_hdr_find_key at Base 1.0-1
- sam_hdr_find_line at Base 1.0-1
- sam_hdr_find_rg at Base 1.0-1
- sam_hdr_free at Base 1.0-1
- sam_hdr_incr_ref at Base 1.0-1
- sam_hdr_length at Base 1.0-1
- sam_hdr_link_pg at Base 1.0-1
- sam_hdr_name2ref at Base 1.0-1
- sam_hdr_new at Base 1.0-1
- sam_hdr_parse at Base 1.0-1
- sam_hdr_parse_ at Base 1.0-1
- sam_hdr_read at Base 1.0-1
- sam_hdr_rebuild at Base 1.0-1
- sam_hdr_str at Base 1.0-1
- sam_hdr_update at Base 1.0-1
- sam_hdr_vadd at Base 1.0-1
- sam_hdr_write at Base 1.0-1
- sam_index_load at Base 1.0-1
- sam_itr_queryi at Base 1.0-1
- sam_itr_querys at Base 1.0-1
- sam_open_mode at Base 1.0-1
- sam_parse1 at Base 1.0-1
- sam_read1 at Base 1.0-1
- sam_write1 at Base 1.0-1
- seq_nt16_str at Base 1.0-1
- seq_nt16_table at Base 1.0-1
- string_alloc at Base 1.0-1
- string_dup at Base 1.0-1
- string_ndup at Base 1.0-1
- string_pool_create at Base 1.0-1
- string_pool_destroy at Base 1.0-1
- stringify_argv at Base 1.0-1
- t_pool_delete_result at Base 1.0-1
- t_pool_destroy at Base 1.0-1
- t_pool_dispatch2 at Base 1.0-1
- t_pool_dispatch at Base 1.0-1
- t_pool_flush at Base 1.0-1
- t_pool_init at Base 1.0-1
- t_pool_next_result at Base 1.0-1
- t_pool_next_result_wait at Base 1.0-1
- t_pool_results_queue_empty at Base 1.0-1
- t_pool_results_queue_len at Base 1.0-1
- t_pool_results_queue_sz at Base 1.0-1
- t_results_queue_destroy at Base 1.0-1
- t_results_queue_init at Base 1.0-1
- tbx_conf_bed at Base 1.0-1
- tbx_conf_gff at Base 1.0-1
- tbx_conf_psltbl at Base 1.0-1
- tbx_conf_sam at Base 1.0-1
- tbx_conf_vcf at Base 1.0-1
- tbx_destroy at Base 1.0-1
- tbx_index at Base 1.0-1
- tbx_index_build at Base 1.0-1
- tbx_index_load at Base 1.0-1
- tbx_name2id at Base 1.0-1
- tbx_parse1 at Base 1.0-1
- tbx_readrec at Base 1.0-1
- tbx_seqnames at Base 1.0-1
- tbx_set_meta at Base 1.0-1
- tokenise_search_path at Base 1.0-1
- vcf_format at Base 1.0-1
- vcf_hdr_read at Base 1.0-1
- vcf_hdr_write at Base 1.0-1
- vcf_parse at Base 1.0-1
- vcf_read at Base 1.0-1
- vcf_write at Base 1.0-1
- vcf_write_line at Base 1.0-1
- vflen at Base 1.0-1
- zfclose at Base 1.0-1
- zfeof at Base 1.0-1
- zfgets at Base 1.0-1
- zfopen at Base 1.0-1
- zfpeek at Base 1.0-1
- zfputs at Base 1.0-1
- zfseeko at Base 1.0-1
- zftello at Base 1.0-1
- zlib_mem_inflate at Base 1.0-1
+ MD5_Final at Base 1.0
+ MD5_Init at Base 1.0
+ MD5_Update at Base 1.0
+ _reader_next_line at Base 1.0
+ _vcf_parse_format at Base 1.0
+ bam_aux2A at Base 1.0
+ bam_aux2Z at Base 1.0
+ bam_aux2f at Base 1.0
+ bam_aux2i at Base 1.0
+ bam_aux_append at Base 1.0
+ bam_aux_del at Base 1.0
+ bam_aux_get at Base 1.0
+ bam_cigar2qlen at Base 1.0
+ bam_cigar2rlen at Base 1.0
+ bam_construct_seq at Base 1.0
+ bam_copy1 at Base 1.0
+ bam_destroy1 at Base 1.0
+ bam_dup1 at Base 1.0
+ bam_endpos at Base 1.0
+ bam_flag2str at Base 1.0
+ bam_hdr_destroy at Base 1.0
+ bam_hdr_dup at Base 1.0
+ bam_hdr_init at Base 1.0
+ bam_hdr_read at Base 1.0
+ bam_hdr_write at Base 1.0
+ bam_header_to_cram at Base 1.0
+ bam_index_build at Base 1.0
+ bam_init1 at Base 1.0
+ bam_mplp_auto at Base 1.0
+ bam_mplp_destroy at Base 1.0
+ bam_mplp_init at Base 1.0
+ bam_mplp_init_overlaps at Base 1.0
+ bam_mplp_set_maxcnt at Base 1.0
+ bam_name2id at Base 1.0
+ bam_plp_auto at Base 1.0
+ bam_plp_destroy at Base 1.0
+ bam_plp_init at Base 1.0
+ bam_plp_init_overlaps at Base 1.0
+ bam_plp_next at Base 1.0
+ bam_plp_push at Base 1.0
+ bam_plp_reset at Base 1.0
+ bam_plp_set_maxcnt at Base 1.0
+ bam_read1 at Base 1.0
+ bam_str2flag at Base 1.0
+ bam_write1 at Base 1.0
+ bcf_add_filter at Base 1.0
+ bcf_calc_ac at Base 1.0
+ bcf_clear at Base 1.0
+ bcf_destroy at Base 1.0
+ bcf_dup at Base 1.0
+ bcf_empty1 at Base 1.0
+ bcf_enc_vchar at Base 1.0
+ bcf_enc_vfloat at Base 1.0
+ bcf_enc_vint at Base 1.0
+ bcf_float_missing at Base 1.0
+ bcf_float_vector_end at Base 1.0
+ bcf_fmt_array at Base 1.0
+ bcf_fmt_sized_array at Base 1.0
+ bcf_get_fmt at Base 1.0
+ bcf_get_format_string at Base 1.0
+ bcf_get_format_values at Base 1.0
+ bcf_get_info at Base 1.0
+ bcf_get_info_values at Base 1.0
+ bcf_get_variant_type at Base 1.0
+ bcf_get_variant_types at Base 1.0
+ bcf_gt_type at Base 1.0
+ bcf_has_filter at Base 1.0
+ bcf_hdr_add_hrec at Base 1.0
+ bcf_hdr_add_sample at Base 1.0
+ bcf_hdr_append at Base 1.0
+ bcf_hdr_check_sanity at Base 1.0
+ bcf_hdr_combine at Base 1.0
+ bcf_hdr_destroy at Base 1.0
+ bcf_hdr_dup at Base 1.0
+ bcf_hdr_fmt_text at Base 1.0
+ bcf_hdr_get_hrec at Base 1.0
+ bcf_hdr_get_version at Base 1.0
+ bcf_hdr_id2int at Base 1.0
+ bcf_hdr_init at Base 1.0
+ bcf_hdr_parse at Base 1.0
+ bcf_hdr_parse_line at Base 1.0
+ bcf_hdr_parse_sample_line at Base 1.0
+ bcf_hdr_printf at Base 1.0
+ bcf_hdr_read at Base 1.0
+ bcf_hdr_register_hrec at Base 1.0
+ bcf_hdr_remove at Base 1.0
+ bcf_hdr_seqnames at Base 1.0
+ bcf_hdr_set at Base 1.0
+ bcf_hdr_set_samples at Base 1.0
+ bcf_hdr_set_version at Base 1.0
+ bcf_hdr_subset at Base 1.0
+ bcf_hdr_sync at Base 1.0
+ bcf_hdr_write at Base 1.0
+ bcf_header_debug at Base 1.0
+ bcf_hrec_add_key at Base 1.0
+ bcf_hrec_debug at Base 1.0
+ bcf_hrec_destroy at Base 1.0
+ bcf_hrec_dup at Base 1.0
+ bcf_hrec_find_key at Base 1.0
+ bcf_hrec_format at Base 1.0
+ bcf_hrec_set_val at Base 1.0
+ bcf_index at Base 1.0
+ bcf_index_build at Base 1.0
+ bcf_init at Base 1.0
+ bcf_is_snp at Base 1.0
+ bcf_read at Base 1.0
+ bcf_readrec at Base 1.0
+ bcf_remove_alleles at Base 1.0
+ bcf_remove_filter at Base 1.0
+ bcf_sr_add_reader at Base 1.0
+ bcf_sr_destroy at Base 1.0
+ bcf_sr_init at Base 1.0
+ bcf_sr_next_line at Base 1.0
+ bcf_sr_regions_destroy at Base 1.0
+ bcf_sr_regions_flush at Base 1.0
+ bcf_sr_regions_init at Base 1.0
+ bcf_sr_regions_next at Base 1.0
+ bcf_sr_regions_overlap at Base 1.0
+ bcf_sr_regions_seek at Base 1.0
+ bcf_sr_remove_reader at Base 1.0
+ bcf_sr_seek at Base 1.0
+ bcf_sr_set_regions at Base 1.0
+ bcf_sr_set_samples at Base 1.0
+ bcf_sr_set_targets at Base 1.0
+ bcf_subset at Base 1.0
+ bcf_subset_format at Base 1.0
+ bcf_sweep_bwd at Base 1.0
+ bcf_sweep_destroy at Base 1.0
+ bcf_sweep_fwd at Base 1.0
+ bcf_sweep_hdr at Base 1.0
+ bcf_sweep_init at Base 1.0
+ bcf_translate at Base 1.0
+ bcf_trim_alleles at Base 1.0
+ bcf_type_shift at Base 1.0
+ bcf_unpack at Base 1.0
+ bcf_update_alleles at Base 1.0
+ bcf_update_alleles_str at Base 1.0
+ bcf_update_filter at Base 1.0
+ bcf_update_format at Base 1.0
+ bcf_update_format_string at Base 1.0
+ bcf_update_id at Base 1.0
+ bcf_update_info at Base 1.0
+ bcf_write at Base 1.0
+ bgzf_check_EOF at Base 1.0
+ bgzf_close at Base 1.0
+ bgzf_dopen at Base 1.0
+ bgzf_flush at Base 1.0
+ bgzf_flush_try at Base 1.0
+ bgzf_getc at Base 1.0
+ bgzf_getline at Base 1.0
+ bgzf_hopen at Base 1.0
+ bgzf_index_add_block at Base 1.0
+ bgzf_index_build_init at Base 1.0
+ bgzf_index_destroy at Base 1.0
+ bgzf_index_dump at Base 1.0
+ bgzf_index_load at Base 1.0
+ bgzf_is_bgzf at Base 1.0
+ bgzf_mt at Base 1.0
+ bgzf_open at Base 1.0
+ bgzf_raw_read at Base 1.0
+ bgzf_raw_write at Base 1.0
+ bgzf_read at Base 1.0
+ bgzf_read_block at Base 1.0
+ bgzf_seek at Base 1.0
+ bgzf_set_cache_size at Base 1.0
+ bgzf_useek at Base 1.0
+ bgzf_utell at Base 1.0
+ bgzf_write at Base 1.0
+ cram_beta_decode_char at Base 1.0
+ cram_beta_decode_free at Base 1.0
+ cram_beta_decode_init at Base 1.0
+ cram_beta_decode_int at Base 1.0
+ cram_beta_encode_char at Base 1.0
+ cram_beta_encode_free at Base 1.0
+ cram_beta_encode_init at Base 1.0
+ cram_beta_encode_int at Base 1.0
+ cram_beta_encode_store at Base 1.0
+ cram_block_method2str at Base 1.0
+ cram_byte_array_len_decode at Base 1.0
+ cram_byte_array_len_decode_free at Base 1.0
+ cram_byte_array_len_decode_init at Base 1.0
+ cram_byte_array_len_encode at Base 1.0
+ cram_byte_array_len_encode_free at Base 1.0
+ cram_byte_array_len_encode_init at Base 1.0
+ cram_byte_array_len_encode_store at Base 1.0
+ cram_byte_array_stop_decode_block at Base 1.0
+ cram_byte_array_stop_decode_char at Base 1.0
+ cram_byte_array_stop_decode_free at Base 1.0
+ cram_byte_array_stop_decode_init at Base 1.0
+ cram_byte_array_stop_encode at Base 1.0
+ cram_byte_array_stop_encode_free at Base 1.0
+ cram_byte_array_stop_encode_init at Base 1.0
+ cram_byte_array_stop_encode_store at Base 1.0
+ cram_close at Base 1.0
+ cram_compress_block at Base 1.0
+ cram_content_type2str at Base 1.0
+ cram_decode_TD at Base 1.0
+ cram_decode_compression_header at Base 1.0
+ cram_decode_slice at Base 1.0
+ cram_decode_slice_header at Base 1.0
+ cram_decode_slice_mt at Base 1.0
+ cram_decode_slice_thread at Base 1.0
+ cram_decoder_init at Base 1.0
+ cram_dopen at Base 1.0
+ cram_encode_compression_header at Base 1.0
+ cram_encode_container at Base 1.0
+ cram_encode_slice_header at Base 1.0
+ cram_encoder_init at Base 1.0
+ cram_encoding2str at Base 1.0
+ cram_eof at Base 1.0
+ cram_external_decode_block at Base 1.0
+ cram_external_decode_char at Base 1.0
+ cram_external_decode_free at Base 1.0
+ cram_external_decode_init at Base 1.0
+ cram_external_decode_int at Base 1.0
+ cram_external_encode at Base 1.0
+ cram_external_encode_free at Base 1.0
+ cram_external_encode_init at Base 1.0
+ cram_external_encode_store at Base 1.0
+ cram_flush at Base 1.0
+ cram_flush_container at Base 1.0
+ cram_flush_container_mt at Base 1.0
+ cram_flush_thread at Base 1.0
+ cram_free_block at Base 1.0
+ cram_free_compression_header at Base 1.0
+ cram_free_container at Base 1.0
+ cram_free_file_def at Base 1.0
+ cram_free_slice at Base 1.0
+ cram_free_slice_header at Base 1.0
+ cram_gamma_decode at Base 1.0
+ cram_gamma_decode_free at Base 1.0
+ cram_gamma_decode_init at Base 1.0
+ cram_get_bam_seq at Base 1.0
+ cram_get_ref at Base 1.0
+ cram_get_seq at Base 1.0
+ cram_header_to_bam at Base 1.0
+ cram_huffman_decode_char0 at Base 1.0
+ cram_huffman_decode_char at Base 1.0
+ cram_huffman_decode_free at Base 1.0
+ cram_huffman_decode_init at Base 1.0
+ cram_huffman_decode_int0 at Base 1.0
+ cram_huffman_decode_int at Base 1.0
+ cram_huffman_encode_char0 at Base 1.0
+ cram_huffman_encode_char at Base 1.0
+ cram_huffman_encode_free at Base 1.0
+ cram_huffman_encode_init at Base 1.0
+ cram_huffman_encode_int0 at Base 1.0
+ cram_huffman_encode_int at Base 1.0
+ cram_huffman_encode_store at Base 1.0
+ cram_index_build at Base 1.0
+ cram_index_free at Base 1.0
+ cram_index_load at Base 1.0
+ cram_index_query at Base 1.0
+ cram_load_reference at Base 1.0
+ cram_new_block at Base 1.0
+ cram_new_compression_header at Base 1.0
+ cram_new_container at Base 1.0
+ cram_new_metrics at Base 1.0
+ cram_new_slice at Base 1.0
+ cram_open at Base 1.0
+ cram_put_bam_seq at Base 1.0
+ cram_read_SAM_hdr at Base 1.0
+ cram_read_block at Base 1.0
+ cram_read_container at Base 1.0
+ cram_read_file_def at Base 1.0
+ cram_read_slice at Base 1.0
+ cram_ref_decr at Base 1.0
+ cram_ref_incr at Base 1.0
+ cram_ref_load at Base 1.0
+ cram_seek at Base 1.0
+ cram_seek_to_refpos at Base 1.0
+ cram_set_header at Base 1.0
+ cram_set_option at Base 1.0
+ cram_set_voption at Base 1.0
+ cram_stats_add at Base 1.0
+ cram_stats_create at Base 1.0
+ cram_stats_del at Base 1.0
+ cram_stats_dump at Base 1.0
+ cram_stats_encoding at Base 1.0
+ cram_stats_free at Base 1.0
+ cram_subexp_decode at Base 1.0
+ cram_subexp_decode_free at Base 1.0
+ cram_subexp_decode_init at Base 1.0
+ cram_uncompress_block at Base 1.0
+ cram_write_SAM_hdr at Base 1.0
+ cram_write_block at Base 1.0
+ cram_write_container at Base 1.0
+ cram_write_file_def at Base 1.0
+ debug_buffer at Base 1.0
+ debug_buffers at Base 1.0
+ download_and_open at Base 1.0
+ expand_cache_path at Base 1.0
+ fai_build at Base 1.0
+ fai_build_core at Base 1.0
+ fai_destroy at Base 1.0
+ fai_fetch at Base 1.0
+ fai_load at Base 1.0
+ fai_read at Base 1.0
+ fai_save at Base 1.0
+ faidx_fetch_nseq at Base 1.0
+ faidx_fetch_seq at Base 1.0
+ faidx_has_seq at Base 1.0
+ file_exists at Base 1.0
+ file_size at Base 1.0
+ find_file_url at Base 1.0
+ flen at Base 1.0
+ hclose at Base 1.0
+ hclose_abruptly at Base 1.0
+ hdopen at Base 1.0
+ hfile_destroy at Base 1.0
+ hfile_init at Base 1.0
+ hfile_oflags at Base 1.0
+ hflush at Base 1.0
+ hgetc2 at Base 1.0
+ hopen at Base 1.0
+ hopen_net at Base 1.0
+ hpeek at Base 1.0
+ hputc2 at Base 1.0
+ hputs2 at Base 1.0
+ hread2 at Base 1.0
+ hrec_add_idx at Base 1.0
+ hseek at Base 1.0
+ hts_close at Base 1.0
+ hts_file_type at Base 1.0
+ hts_get_bgzfp at Base 1.0
+ hts_getline at Base 1.0
+ hts_idx_destroy at Base 1.0
+ hts_idx_finish at Base 1.0
+ hts_idx_get_meta at Base 1.0
+ hts_idx_get_n_no_coor at Base 1.0
+ hts_idx_get_stat at Base 1.0
+ hts_idx_getfn at Base 1.0
+ hts_idx_init at Base 1.0
+ hts_idx_load at Base 1.0
+ hts_idx_load_local at Base 1.0
+ hts_idx_push at Base 1.0
+ hts_idx_save at Base 1.0
+ hts_idx_seqnames at Base 1.0
+ hts_idx_set_meta at Base 1.0
+ hts_itr_destroy at Base 1.0
+ hts_itr_next at Base 1.0
+ hts_itr_query at Base 1.0
+ hts_itr_querys at Base 1.0
+ hts_open at Base 1.0
+ hts_parse_reg at Base 1.0
+ hts_readlines at Base 1.0
+ hts_readlist at Base 1.0
+ hts_set_fai_filename at Base 1.0
+ hts_set_threads at Base 1.0
+ hts_useek at Base 1.0
+ hts_utell at Base 1.0
+ hts_verbose at Base 1.0
+ hts_version at Base 1.0
+ hwrite2 at Base 1.0
+ int32_decode at Base 1.0
+ int32_encode at Base 1.0
+ int32_get at Base 1.0
+ int32_put at Base 1.0
+ is_directory at Base 1.0
+ is_file at Base 1.0
+ itf8_decode at Base 1.0
+ itf8_encode at Base 1.0
+ itf8_put_blk at Base 1.0
+ kf_betai at Base 1.0
+ kf_erfc at Base 1.0
+ kf_gammap at Base 1.0
+ kf_gammaq at Base 1.0
+ kf_lgamma at Base 1.0
+ kftp_connect at Base 1.0
+ kftp_connect_file at Base 1.0
+ kftp_parse_url at Base 1.0
+ kftp_reconnect at Base 1.0
+ kh_clear_s2i at Base 1.0
+ kh_del_s2i at Base 1.0
+ kh_destroy_s2i at Base 1.0
+ kh_get_s2i at Base 1.0
+ kh_init_s2i at Base 1.0
+ kh_put_s2i at Base 1.0
+ kh_resize_s2i at Base 1.0
+ khttp_connect_file at Base 1.0
+ khttp_parse_url at Base 1.0
+ kmemmem at Base 1.0
+ knet_close at Base 1.0
+ knet_dopen at Base 1.0
+ knet_open at Base 1.0
+ knet_read at Base 1.0
+ knet_seek at Base 1.0
+ ks_combsort__off at Base 1.0
+ ks_destroy at Base 1.0
+ ks_getuntil2 at Base 1.0
+ ks_heapadjust__off at Base 1.0
+ ks_heapmake__off at Base 1.0
+ ks_heapsort__off at Base 1.0
+ ks_init at Base 1.0
+ ks_introsort__off at Base 1.0
+ ks_ksmall__off at Base 1.0
+ ks_mergesort__off at Base 1.0
+ ks_shuffle__off at Base 1.0
+ ksplit_core at Base 1.0
+ ksprintf at Base 1.0
+ kstrnstr at Base 1.0
+ kstrstr at Base 1.0
+ kstrtok at Base 1.0
+ kt_fisher_exact at Base 1.0
+ kvsprintf at Base 1.0
+ ltf8_decode at Base 1.0
+ ltf8_get at Base 1.0
+ ltf8_put at Base 1.0
+ mfascii at Base 1.0
+ mfclose at Base 1.0
+ mfcreate at Base 1.0
+ mfcreate_from at Base 1.0
+ mfdestroy at Base 1.0
+ mfdetach at Base 1.0
+ mfeof at Base 1.0
+ mfflush at Base 1.0
+ mfgetc at Base 1.0
+ mfgets at Base 1.0
+ mfopen at Base 1.0
+ mfprintf at Base 1.0
+ mfread at Base 1.0
+ mfrecreate at Base 1.0
+ mfreopen at Base 1.0
+ mfseek at Base 1.0
+ mfsteal at Base 1.0
+ mftell at Base 1.0
+ mftruncate at Base 1.0
+ mfwrite at Base 1.0
+ mkdir_prefix at Base 1.0
+ mrewind at Base 1.0
+ mstderr at Base 1.0
+ mstdin at Base 1.0
+ mstdout at Base 1.0
+ mungetc at Base 1.0
+ open_path_mfile at Base 1.0
+ paranoid_fclose at Base 1.0
+ pool_alloc at Base 1.0
+ pool_create at Base 1.0
+ pool_destroy at Base 1.0
+ pool_free at Base 1.0
+ refs2id at Base 1.0
+ refs_free at Base 1.0
+ sam_format1 at Base 1.0
+ sam_hdr_PG_ID at Base 1.0
+ sam_hdr_add at Base 1.0
+ sam_hdr_add_PG at Base 1.0
+ sam_hdr_add_lines at Base 1.0
+ sam_hdr_decr_ref at Base 1.0
+ sam_hdr_dump at Base 1.0
+ sam_hdr_dup at Base 1.0
+ sam_hdr_find at Base 1.0
+ sam_hdr_find_key at Base 1.0
+ sam_hdr_find_line at Base 1.0
+ sam_hdr_find_rg at Base 1.0
+ sam_hdr_free at Base 1.0
+ sam_hdr_incr_ref at Base 1.0
+ sam_hdr_length at Base 1.0
+ sam_hdr_link_pg at Base 1.0
+ sam_hdr_name2ref at Base 1.0
+ sam_hdr_new at Base 1.0
+ sam_hdr_parse at Base 1.0
+ sam_hdr_parse_ at Base 1.0
+ sam_hdr_read at Base 1.0
+ sam_hdr_rebuild at Base 1.0
+ sam_hdr_str at Base 1.0
+ sam_hdr_update at Base 1.0
+ sam_hdr_vadd at Base 1.0
+ sam_hdr_write at Base 1.0
+ sam_index_load at Base 1.0
+ sam_itr_queryi at Base 1.0
+ sam_itr_querys at Base 1.0
+ sam_open_mode at Base 1.0
+ sam_parse1 at Base 1.0
+ sam_read1 at Base 1.0
+ sam_write1 at Base 1.0
+ seq_nt16_str at Base 1.0
+ seq_nt16_table at Base 1.0
+ string_alloc at Base 1.0
+ string_dup at Base 1.0
+ string_ndup at Base 1.0
+ string_pool_create at Base 1.0
+ string_pool_destroy at Base 1.0
+ stringify_argv at Base 1.0
+ t_pool_delete_result at Base 1.0
+ t_pool_destroy at Base 1.0
+ t_pool_dispatch2 at Base 1.0
+ t_pool_dispatch at Base 1.0
+ t_pool_flush at Base 1.0
+ t_pool_init at Base 1.0
+ t_pool_next_result at Base 1.0
+ t_pool_next_result_wait at Base 1.0
+ t_pool_results_queue_empty at Base 1.0
+ t_pool_results_queue_len at Base 1.0
+ t_pool_results_queue_sz at Base 1.0
+ t_results_queue_destroy at Base 1.0
+ t_results_queue_init at Base 1.0
+ tbx_conf_bed at Base 1.0
+ tbx_conf_gff at Base 1.0
+ tbx_conf_psltbl at Base 1.0
+ tbx_conf_sam at Base 1.0
+ tbx_conf_vcf at Base 1.0
+ tbx_destroy at Base 1.0
+ tbx_index at Base 1.0
+ tbx_index_build at Base 1.0
+ tbx_index_load at Base 1.0
+ tbx_name2id at Base 1.0
+ tbx_parse1 at Base 1.0
+ tbx_readrec at Base 1.0
+ tbx_seqnames at Base 1.0
+ tbx_set_meta at Base 1.0
+ tokenise_search_path at Base 1.0
+ vcf_format at Base 1.0
+ vcf_hdr_read at Base 1.0
+ vcf_hdr_write at Base 1.0
+ vcf_parse at Base 1.0
+ vcf_read at Base 1.0
+ vcf_write at Base 1.0
+ vcf_write_line at Base 1.0
+ vflen at Base 1.0
+ zfclose at Base 1.0
+ zfeof at Base 1.0
+ zfgets at Base 1.0
+ zfopen at Base 1.0
+ zfpeek at Base 1.0
+ zfputs at Base 1.0
+ zfseeko at Base 1.0
+ zftello at Base 1.0
+ zlib_mem_inflate at Base 1.0

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git

