[med-svn] [htslib] 04/06: Replace the old tabix package (from the tabix source package).

[Charles Plessy]

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plessy pushed a commit to branch debian/unstable
in repository htslib.

commit 8c7f7d47b9510aa9084ca782dd5144533d051ef3
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Aug 16 21:30:10 2014 +0900

    Replace the old tabix package (from the tabix source package).
---
 debian/control        | 14 +++++++++++++-
 debian/tabix.install  |  2 ++
 debian/tabix.links    |  1 +
 debian/tabix.manpages |  1 +
 4 files changed, 17 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index 18f52d8..f443ee9 100644
--- a/debian/control
+++ b/debian/control
@@ -1,7 +1,7 @@
 Source: htslib
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Charles Plessy <plessy at debian.org>
-Section: libs
+Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
                dh-exec,
@@ -14,6 +14,7 @@ Homepage: https://github.com/samtools/htslib
 Package: libhts1
 Architecture: any
 Multi-Arch: same
+Section: libs
 Pre-Depends: ${misc:Pre-Depends}
 Depends: ${shlibs:Depends},
          ${misc:Depends}
@@ -53,3 +54,14 @@ Description: Test data for HTSlib
  sequence data obtained by high-throughput sequencing.
  .
  This package contains test files and scripts for the HTSlib.
+
+Package: tabix
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: generic indexer for TAB-delimited genome position files
+ Tabix indexes files where some columns indicate sequence coordinates: name
+ (usually a chromosme), start and stop. The input data file must be position
+ sorted and compressed by bgzip (provided in this package), which has a gzip
+ like interface. After indexing, tabix is able to quickly retrieve data lines by
+ chromosomal coordinates. Fast data retrieval also works over network if an URI
+ is given as a file name.
diff --git a/debian/tabix.install b/debian/tabix.install
new file mode 100644
index 0000000..431c734
--- /dev/null
+++ b/debian/tabix.install
@@ -0,0 +1,2 @@
+tabix	usr/bin
+bgzip	usr/bin
diff --git a/debian/tabix.links b/debian/tabix.links
new file mode 100644
index 0000000..743712c
--- /dev/null
+++ b/debian/tabix.links
@@ -0,0 +1 @@
+usr/share/man/man1/tabix.1.gz	usr/share/man/man1/bgzip.1.gz
diff --git a/debian/tabix.manpages b/debian/tabix.manpages
new file mode 100644
index 0000000..bb616e0
--- /dev/null
+++ b/debian/tabix.manpages
@@ -0,0 +1 @@
+tabix.1

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