[med-svn] samtools annotated tag 0.2.0-rc10 created (now c105767)

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a change to annotated tag 0.2.0-rc10
in repository samtools.

        at  c105767   (tag)
   tagging  7ace6c23711dee07137c1654bb97a1e659b0e5c4 (commit)
  replaces  0.2.0-rc9
 tagged by  John Marshall
        on  Tue Jul 1 16:31:17 2014 +0100

- Log -----------------------------------------------------------------
Test release RC10

James Bonfield (1):
      Added CRAM reference information and an example.

John Marshall (9):
      Merge mpileup test fix: Remove temporary hack, view -C -T now works
      Add mpileup --output option to redirect output to a file
      Add mpileup -o FILE as a shorthand for --output
      Save the right error text (fixes cut-and-pasto)
      Report file opening failures rather than crashing
      Note explicitly that merge output remains sorted
      Report errno for file opening failures
      Implement bam2depth directly against the htslib API
      Report index and region failures rather than crashing

Martin O. Pollard (2):
      Fix bug in merge for sorting large files
      Fix fixmate's properly paired check, add sam/cram output, add tests

Petr Danecek (4):
      mpileup tests: Remove temporary hack, view -C -T now works
      Updated calling section of samtools man page
      mpileup: New optional FORMAT/DPR and INFO/DPR annotations
      mpileup: Output symbolic <X> allele instead of VCF-incompatible X

-----------------------------------------------------------------------

No new revisions were added by this update.

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/samtools.git