[med-svn] [htslib] annotated tag 0.2.0-rc10 created (now c6e5c71)

[Charles Plessy]

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plessy pushed a change to annotated tag 0.2.0-rc10
in repository htslib.

        at  c6e5c71   (tag)
   tagging  ac4f30f313b28d8a4a02793beb6f79c134f39287 (commit)
  replaces  0.2.0-rc9
 tagged by  John Marshall
        on  Tue Jul 1 16:31:17 2014 +0100

- Log -----------------------------------------------------------------
Test release RC10

James Bonfield (1):
      Fixed REF_PATH to handle URLs better.

Joel Thibault (1):
      Add extern "C" around API to enable C++ linking

John Marshall (3):
      Suppress compression suffix search on default EBI MD5 service
      Merge REF_PATH fixes and libcurl removal (PR #111)
      On open failure, set errno instead of printing message

Karthik Gururaj (1):
      Fixed bug in bcf1_sync. The main cause of the bug is as follows:

Petr Danecek (17):
      vcf: Fix BCF syncing when only partially unpacked
      vcf: Fixes in bcf_translate
      bgzf: Do not end prematurely on non-critical Z_BUF_ERROR zlib error
      vcf: Fix bcf_hdr_id2hrec, col_type parameter is needed as well
      bcf_trim_als: Propagate error instead of assert
      bcf_update_alleles: Reference length with INFO/END
      Fix in index initialization
      Improved bug fix of bcf1_sync() from the commit 2504243:
      synced_reader: Consider non-variant sites as matching in comparisons
      vcf: Detect broken structured header lines
      synced_reader: Logical complements of target regions
      bgzf: Translate windows line endings
      bcf_hdr_combine: Check for tags of conflicting lengths
      faidx: Exit with an error if run on gzip-ed files
      vcf: Support for mpileup's symbolic <X> allele
      Expose bcf_hdr_parse
      vcf: Expose bcf_hdr_sync() and hrec_add_idx()

pd3 (1):
      Merge pull request #108 from MauricioCarneiro/develop

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