[med-svn] samtools 01/02: Drop patch for file that was dropped.

[Charles Plessy]

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plessy pushed a commit to branch debian/unstable
in repository samtools.

commit b8eb378e52259ab39060578a2336a46f5234fc9b
Author: Charles Plessy <plessy at debian.org>
Date:   Thu Aug 21 08:31:10 2014 +0900

    Drop patch for file that was dropped.
---
 debian/patches/fix_example_makefile.patch | 38 -------------------------------
 1 file changed, 38 deletions(-)

diff --git a/debian/patches/fix_example_makefile.patch b/debian/patches/fix_example_makefile.patch
deleted file mode 100644
index d3db4aa..0000000
--- a/debian/patches/fix_example_makefile.patch
+++ /dev/null
@@ -1,38 +0,0 @@
-Description: disable samtools pileup commands in the example tests.
- ‘samtools pileup’ has been dropped in version 0.1.17.
-Forwarded: samtools-devel at lists.sourceforge.net
-Origin: vendor
-
-Index: samtools/examples/Makefile
-===================================================================
---- samtools.orig/examples/Makefile
-+++ samtools/examples/Makefile
-@@ -1,5 +1,5 @@
- all:../libbam.a ../samtools ../bcftools/bcftools \
--	ex1.glf ex1.pileup.gz ex1.bam.bai ex1f-rmduppe.bam ex1f-rmdupse.bam ex1.glfview.gz ex1.bcf calDepth
-+	ex1.bam.bai ex1f-rmduppe.bam ex1f-rmdupse.bam ex1.bcf calDepth
- 		@echo; echo \# You can now launch the viewer with: \'samtools tview ex1.bam ex1.fa\'; echo;
- 
- ex1.fa.fai:ex1.fa
-@@ -8,12 +8,6 @@
- 		../samtools import ex1.fa.fai ex1.sam.gz ex1.bam
- ex1.bam.bai:ex1.bam
- 		../samtools index ex1.bam
--ex1.pileup.gz:ex1.bam ex1.fa
--		../samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz
--ex1.glf:ex1.bam ex1.fa
--		../samtools pileup -gf ex1.fa ex1.bam > ex1.glf
--ex1.glfview.gz:ex1.glf
--		../samtools glfview ex1.glf | gzip > ex1.glfview.gz
- ex1a.bam:ex1.bam
- 		../samtools view -h ex1.bam | awk 'BEGIN{FS=OFS="\t"}{if(/^@/)print;else{$$1=$$1"a";print}}' | ../samtools view -bS - > $@
- ex1b.bam:ex1.bam
-@@ -40,7 +34,7 @@
- 		(cd ..; make libbam.a)
- 
- calDepth:../libbam.a calDepth.c
--		gcc -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz
-+		gcc -g -Wall -O2 -I.. calDepth.c -o $@ -L.. -lbam -lm -lz -lpthread
- 
- clean:
- 		rm -fr *.bam *.bai *.glf* *.fai *.pileup* *~ calDepth *.dSYM ex1*.rg ex1.bcf

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