[med-svn] samtools 02/07: Temporary patch to build dynamically samtools.

[Charles Plessy]

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plessy pushed a commit to branch debian/unstable
in repository samtools.

commit 218c1c1d9e62dbb2da8d780eeb66cf1af9fb721b
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Aug 23 15:26:12 2014 +0900

    Temporary patch to build dynamically samtools.
    
    I hope it can be removed at the next upstream release.
---
 debian/patches/dynamic-build.patch | 15 +++++++++++++++
 debian/patches/series              |  1 +
 2 files changed, 16 insertions(+)

diff --git a/debian/patches/dynamic-build.patch b/debian/patches/dynamic-build.patch
new file mode 100644
index 0000000..569ca87
--- /dev/null
+++ b/debian/patches/dynamic-build.patch
@@ -0,0 +1,15 @@
+Description: disable inclusion of accessory makefile needed for static build
+Forwarded: https://github.com/samtools/samtools/issues/275
+Author: Charles Plessy
+
+--- a/Makefile
++++ b/Makefile
+@@ -82,7 +82,7 @@
+ 
+ # Adjust $(HTSDIR) to point to your top-level htslib directory
+ HTSDIR = ../htslib
+-include $(HTSDIR)/htslib.mk
++-include $(HTSDIR)/htslib.mk
+ HTSLIB = $(HTSDIR)/libhts.a
+ BGZIP  = $(HTSDIR)/bgzip
+ 
diff --git a/debian/patches/series b/debian/patches/series
index 084df79..74ed30a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 fix_coverage_cap.patch
 fix_segfault_with_small_ref.patch
+dynamic-build.patch

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