[med-svn] [iva] 01/01: Package builds perfectly and is completely lintian clean

[Jorge Soares]

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jssoares-guest pushed a commit to branch master
in repository iva.

commit 93f8e4156a9cb2d15ffb605e1b914b68c9faf8ed
Author: Jorge Soares <j.s.soares at gmail.com>
Date:   Mon Dec 8 12:51:35 2014 +0000

    Package builds perfectly and is completely lintian clean
---
 debian/man/iva.1                                  | 6 +++---
 debian/patches/add-shebang-line-to-getMummerStats | 7 +++++--
 debian/patches/remove-pypi-deps-from-setup-py     | 3 +--
 debian/patches/series                             | 2 ++
 debian/rules                                      | 2 +-
 5 files changed, 12 insertions(+), 8 deletions(-)

diff --git a/debian/man/iva.1 b/debian/man/iva.1
index ece955d..632f894 100644
--- a/debian/man/iva.1
+++ b/debian/man/iva.1
@@ -16,18 +16,18 @@ show this help message and exit
 .TP
 \fB\-f\fR filename[.gz], \fB\-\-reads_fwd\fR filename[.gz]
 Name of forward reads fasta/q file. Must be used in
-conjuction with \fB\-\-reads_rev\fR
+conjunction with \fB\-\-reads_rev\fR
 .TP
 \fB\-r\fR filename[.gz], \fB\-\-reads_rev\fR filename[.gz]
 Name of reverse reads fasta/q file. Must be used in
-conjuction with \fB\-\-reads_fwd\fR
+conjunction with \fB\-\-reads_fwd\fR
 .TP
 \fB\-\-fr\fR filename[.gz]
 Name of interleaved fasta/q file
 .TP
 \fB\-\-keep_files\fR
 Keep intermediate files (could be many!). Default is
-to delete all unecessary files
+to delete all unnecessary files
 .TP
 \fB\-\-contigs\fR filename[.gz]
 Fasta file of contigs to be extended. Incompatible
diff --git a/debian/patches/add-shebang-line-to-getMummerStats b/debian/patches/add-shebang-line-to-getMummerStats
index a92987d..53499e5 100644
--- a/debian/patches/add-shebang-line-to-getMummerStats
+++ b/debian/patches/add-shebang-line-to-getMummerStats
@@ -1,8 +1,11 @@
-Description: Adding shebang line as it's missing
+Descripiton: Adds the shebang line
+Author: Jorge Soares <j.s.soares at gmail.com>
+Last-Update: 2014-12-08
 --- a/iva/gage/getMummerStats.sh
 +++ b/iva/gage/getMummerStats.sh
-@@ -1,3 +1,4 @@
+@@ -1,3 +1,5 @@
 +#!/bin/sh
++
  FILENAME=$1
  SCRIPT_PATH=$2
  JAVA_PATH=$2:.
diff --git a/debian/patches/remove-pypi-deps-from-setup-py b/debian/patches/remove-pypi-deps-from-setup-py
index 93448ce..782d18e 100644
--- a/debian/patches/remove-pypi-deps-from-setup-py
+++ b/debian/patches/remove-pypi-deps-from-setup-py
@@ -1,7 +1,6 @@
-Descripition: Deletes pypi deps
+Description: Removes deps from setup.py
 Author: Jorge Soares <j.s.soares at gmail.com>
 Last-Update: 2014-12-08
-
 --- a/setup.py
 +++ b/setup.py
 @@ -17,7 +17,5 @@
diff --git a/debian/patches/series b/debian/patches/series
index e69de29..c16a3cf 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -0,0 +1,2 @@
+remove-pypi-deps-from-setup-py
+add-shebang-line-to-getMummerStats
diff --git a/debian/rules b/debian/rules
index 0f40ddb..ca23511 100755
--- a/debian/rules
+++ b/debian/rules
@@ -34,5 +34,5 @@ override_dh_auto_build:
 	chmod a+x $(ratt_dir)/main.ratt.pl
 	dh_auto_build
 
-override_dh_auto_test:
+#override_dh_auto_test:
 #PASS

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