[med-svn] [seqtk] 01/01: Take over files from SVN

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository seqtk.

commit 1727e71c5364b22bae17ca31d0d2fba6b9e762e2
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 1 13:25:03 2014 +0100

    Take over files from SVN
---
 debian/changelog       |  5 +++++
 debian/compat          |  1 +
 debian/control         | 24 ++++++++++++++++++++++++
 debian/copyright       | 32 ++++++++++++++++++++++++++++++++
 debian/get-orig-source |  3 +++
 debian/rules           |  9 +++++++++
 debian/source/format   |  1 +
 debian/watch           |  3 +++
 8 files changed, 78 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..9478225
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+seqtk (0.0.20121016-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 07 Nov 2012 16:07:35 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..8c3c586
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,24 @@
+Source: seqtk
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Homepage: http://kevin-gattaca.blogspot.de/2012/05/program-seqtk-for-sampling-trimming.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seqtk/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/seqtk/trunk/
+
+Package: seqtk
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: sampling, trimming, fastq2fasta, subsequence, reverse complement
+ Currently, seqtk supports quality based trimming with the phred
+ algorithm, converting fastq to fasta, reverse complementing sequences,
+ extracting or masking subsequences in regions given in a BED/name list
+ file, and more.  It contains a subsampling module to sample exactly n
+ sequences or a fraction of sequences.
+ .
+ Seqtk supports both fasta and fastq input files, which can be
+ optionally gzip compressed.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..1d59bcf
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,32 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: seqtk
+Source: https://github.com/lh3/seqtk
+
+Files: *
+Copyright: © 2008-2012 Heng Li <lh3 at me.com>
+License: MIT
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
diff --git a/debian/get-orig-source b/debian/get-orig-source
new file mode 100755
index 0000000..46e5f86
--- /dev/null
+++ b/debian/get-orig-source
@@ -0,0 +1,3 @@
+#!/bin/sh
+echo "Need to ask upstream for real release.  Meanwhile you can do:"
+echo "  git clone https://github.com/lh3/seqtk.git"
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..e8f077e
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..4f7ce78
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+# version=3
+# Only at
+#   https://github.com/lh3/seqtk.git

-- 
Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/seqtk.git