[med-svn] [dnaclust] 01/01: Add some very basic initial packaging for dnaclust

[Andreas Tille]

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tille pushed a commit to branch master
in repository dnaclust.

commit a63692921a14287a4662f4f5e4927aac1cef60ce
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 1 16:59:16 2014 +0100

    Add some very basic initial packaging for dnaclust
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 23 +++++++++++++++++++++++
 debian/copyright     | 11 +++++++++++
 debian/rules         | 23 +++++++++++++++++++++++
 debian/source/format |  1 +
 debian/upstream      | 12 ++++++++++++
 debian/watch         |  2 ++
 8 files changed, 78 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..2ae80aa
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+dnaclust (0.0.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Thu, 24 May 2012 14:30:13 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..138a285
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,23 @@
+Source: dnaclust
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/<pkg>/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/<pkg>/trunk/
+Homepage: http://dnaclust.sourceforge.net/
+
+Package: dnaclust
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: tool for clustering millions of short DNA sequences
+ dnaclust is a tool for clustering large number of short DNA sequences.
+ The clusters are created in such a way that the "radius" of each
+ clusters is no more than the specified threshold.
+ .
+ The input sequences to be clustered should be in Fasta format. The id
+ of each sequence is based on the first word of the seqeunce in the Fasta
+ format. The first word is the prefix of the header up to the first
+ occurance of white space charachters in the header. 
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..4e27a1f
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: <pkg>
+Source: <path_to_download>
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..58ec00b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream b/debian/upstream
new file mode 100644
index 0000000..d8b5812
--- /dev/null
+++ b/debian/upstream
@@ -0,0 +1,12 @@
+Reference:
+  Author: 
+  Title: 
+  Journal: 
+  Year: 
+  Volume: 
+  Number: 
+  Pages: 
+  DOI: 
+  PMID:
+  URL: 
+  eprint: 
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..3774673
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/dnaclust/dnaclust_repo_release([\d.]+)\.zip

-- 
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